EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000001440 (Gene tree)
Gene ID: 100060584
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 4537 bases
Position: chr7:1518571-1523107
Accession: 100060584
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000000982	LSM	PF01423.22	3.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000001261	LSM7-201	494	-	ENSECAP00000000982	156 (aa)	XP_023500139	F7D0N3

Gene Model

Click here to download ENSECAG00000001440's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03018	RNA degradation	KEGG
ecb03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000001440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000001440	LSM7	66	96.117	ENSG00000130332	LSM7	100	96.117	Homo_sapiens
ENSECAG00000001440	LSM7	60	93.617	ENSAPOG00000015573	lsm7	81	93.617	Acanthochromis_polyacanthus
ENSECAG00000001440	LSM7	66	93.204	ENSAMEG00000005484	LSM7	100	93.204	Ailuropoda_melanoleuca
ENSECAG00000001440	LSM7	63	91.837	ENSACIG00000006498	lsm7	78	91.837	Amphilophus_citrinellus
ENSECAG00000001440	LSM7	65	91.089	ENSAOCG00000001077	lsm7	92	91.089	Amphiprion_ocellaris
ENSECAG00000001440	LSM7	66	91.262	ENSAPEG00000000694	lsm7	100	91.262	Amphiprion_percula
ENSECAG00000001440	LSM7	65	91.089	ENSAPEG00000024447	lsm7	92	91.089	Amphiprion_percula
ENSECAG00000001440	LSM7	66	91.262	ENSATEG00000008557	lsm7	100	91.262	Anabas_testudineus
ENSECAG00000001440	LSM7	66	88.350	ENSANAG00000022222	-	100	88.350	Aotus_nancymaae
ENSECAG00000001440	LSM7	66	96.117	ENSANAG00000037196	-	100	96.117	Aotus_nancymaae
ENSECAG00000001440	LSM7	66	90.291	ENSACLG00000021021	lsm7	100	90.291	Astatotilapia_calliptera
ENSECAG00000001440	LSM7	66	91.262	ENSAMXG00000037622	lsm7	100	91.262	Astyanax_mexicanus
ENSECAG00000001440	LSM7	66	96.117	ENSBTAG00000004521	LSM7	100	96.117	Bos_taurus
ENSECAG00000001440	LSM7	64	57.000	WBGene00003081	lsm-7	88	56.522	Caenorhabditis_elegans
ENSECAG00000001440	LSM7	65	95.050	ENSCAFG00000019409	LSM7	98	95.050	Canis_familiaris
ENSECAG00000001440	LSM7	88	76.812	ENSCAFG00020018168	LSM7	74	95.050	Canis_lupus_dingo
ENSECAG00000001440	LSM7	66	94.175	ENSCHIG00000023663	LSM7	100	94.175	Capra_hircus
ENSECAG00000001440	LSM7	66	96.117	ENSCPOG00000014025	LSM7	100	96.117	Cavia_porcellus
ENSECAG00000001440	LSM7	65	96.040	ENSCCAG00000035456	LSM7	99	96.040	Cebus_capucinus
ENSECAG00000001440	LSM7	66	96.117	ENSCATG00000023543	LSM7	100	96.117	Cercocebus_atys
ENSECAG00000001440	LSM7	66	96.117	ENSCLAG00000011635	LSM7	100	96.117	Chinchilla_lanigera
ENSECAG00000001440	LSM7	66	96.117	ENSCSAG00000011599	LSM7	100	96.117	Chlorocebus_sabaeus
ENSECAG00000001440	LSM7	62	81.250	ENSCING00000022134	-	91	82.222	Ciona_intestinalis
ENSECAG00000001440	LSM7	66	96.117	ENSCANG00000035525	LSM7	100	96.117	Colobus_angolensis_palliatus
ENSECAG00000001440	LSM7	58	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSECAG00000001440	LSM7	66	97.087	ENSCGRG00001000807	-	100	97.087	Cricetulus_griseus_chok1gshd
ENSECAG00000001440	LSM7	58	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSECAG00000001440	LSM7	65	97.030	ENSCGRG00000014355	-	97	97.030	Cricetulus_griseus_crigri
ENSECAG00000001440	LSM7	65	91.089	ENSCSEG00000014900	lsm7	89	88.571	Cynoglossus_semilaevis
ENSECAG00000001440	LSM7	69	87.850	ENSCVAG00000021091	lsm7	97	89.524	Cyprinodon_variegatus
ENSECAG00000001440	LSM7	66	91.262	ENSDARG00000058328	lsm7	100	91.262	Danio_rerio
ENSECAG00000001440	LSM7	65	96.078	ENSDORG00000024460	Lsm7	100	96.078	Dipodomys_ordii
ENSECAG00000001440	LSM7	65	72.816	FBgn0261068	LSm7	83	75.824	Drosophila_melanogaster
ENSECAG00000001440	LSM7	65	93.069	ENSETEG00000012788	LSM7	99	93.069	Echinops_telfairi
ENSECAG00000001440	LSM7	53	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSECAG00000001440	LSM7	66	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSECAG00000001440	LSM7	66	95.146	ENSFCAG00000003445	LSM7	100	95.146	Felis_catus
ENSECAG00000001440	LSM7	65	93.069	ENSFALG00000011912	LSM7	100	93.069	Ficedula_albicollis
ENSECAG00000001440	LSM7	62	95.833	ENSFDAG00000007661	LSM7	97	95.699	Fukomys_damarensis
ENSECAG00000001440	LSM7	72	84.821	ENSFHEG00000006349	lsm7	94	89.524	Fundulus_heteroclitus
ENSECAG00000001440	LSM7	66	89.320	ENSGMOG00000013320	lsm7	100	89.320	Gadus_morhua
ENSECAG00000001440	LSM7	66	92.233	ENSGAFG00000013902	lsm7	100	92.233	Gambusia_affinis
ENSECAG00000001440	LSM7	66	90.291	ENSGACG00000010390	lsm7	100	90.291	Gasterosteus_aculeatus
ENSECAG00000001440	LSM7	66	96.117	ENSGGOG00000010172	LSM7	100	96.117	Gorilla_gorilla
ENSECAG00000001440	LSM7	66	90.291	ENSHBUG00000004616	lsm7	100	90.291	Haplochromis_burtoni
ENSECAG00000001440	LSM7	66	96.117	ENSHGLG00000010587	LSM7	100	96.117	Heterocephalus_glaber_female
ENSECAG00000001440	LSM7	66	96.117	ENSHGLG00100000852	LSM7	100	96.117	Heterocephalus_glaber_male
ENSECAG00000001440	LSM7	65	90.099	ENSHCOG00000020252	lsm7	92	90.323	Hippocampus_comes
ENSECAG00000001440	LSM7	66	93.204	ENSIPUG00000024724	lsm7	100	93.204	Ictalurus_punctatus
ENSECAG00000001440	LSM7	65	96.040	ENSSTOG00000028372	LSM7	99	96.040	Ictidomys_tridecemlineatus
ENSECAG00000001440	LSM7	65	96.040	ENSJJAG00000001936	Lsm7	98	96.040	Jaculus_jaculus
ENSECAG00000001440	LSM7	66	92.233	ENSKMAG00000022151	lsm7	100	92.233	Kryptolebias_marmoratus
ENSECAG00000001440	LSM7	66	90.291	ENSLBEG00000005203	lsm7	100	90.291	Labrus_bergylta
ENSECAG00000001440	LSM7	60	94.624	ENSLACG00000015700	LSM7	100	93.204	Latimeria_chalumnae
ENSECAG00000001440	LSM7	66	92.233	ENSLOCG00000004356	lsm7	100	92.233	Lepisosteus_oculatus
ENSECAG00000001440	LSM7	65	96.040	ENSLAFG00000029302	LSM7	98	96.040	Loxodonta_africana
ENSECAG00000001440	LSM7	66	96.117	ENSMFAG00000044572	LSM7	100	96.117	Macaca_fascicularis
ENSECAG00000001440	LSM7	66	96.117	ENSMMUG00000000452	LSM7	100	96.117	Macaca_mulatta
ENSECAG00000001440	LSM7	66	96.117	ENSMNEG00000004393	LSM7	100	96.117	Macaca_nemestrina
ENSECAG00000001440	LSM7	66	96.117	ENSMLEG00000030852	LSM7	100	96.117	Mandrillus_leucophaeus
ENSECAG00000001440	LSM7	66	90.291	ENSMAMG00000005410	lsm7	100	90.291	Mastacembelus_armatus
ENSECAG00000001440	LSM7	66	90.291	ENSMZEG00005028055	lsm7	100	90.291	Maylandia_zebra
ENSECAG00000001440	LSM7	67	94.231	ENSMGAG00000000750	LSM7	91	94.286	Meleagris_gallopavo
ENSECAG00000001440	LSM7	66	97.087	ENSMAUG00000009276	Lsm7	100	97.087	Mesocricetus_auratus
ENSECAG00000001440	LSM7	66	96.117	ENSMICG00000028619	-	100	96.117	Microcebus_murinus
ENSECAG00000001440	LSM7	66	95.146	ENSMICG00000009988	-	100	95.146	Microcebus_murinus
ENSECAG00000001440	LSM7	66	97.087	ENSMOCG00000016925	Lsm7	100	97.087	Microtus_ochrogaster
ENSECAG00000001440	LSM7	66	91.262	ENSMMOG00000019645	lsm7	98	91.262	Mola_mola
ENSECAG00000001440	LSM7	66	95.146	ENSMODG00000004722	LSM7	100	95.146	Monodelphis_domestica
ENSECAG00000001440	LSM7	67	89.423	ENSMALG00000014511	lsm7	81	88.571	Monopterus_albus
ENSECAG00000001440	LSM7	66	95.146	MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	Mus_caroli
ENSECAG00000001440	LSM7	66	95.146	ENSMUSG00000035215	Lsm7	100	95.146	Mus_musculus
ENSECAG00000001440	LSM7	66	95.146	MGP_PahariEiJ_G0031020	Lsm7	100	95.146	Mus_pahari
ENSECAG00000001440	LSM7	66	95.146	MGP_SPRETEiJ_G0016425	Lsm7	100	95.146	Mus_spretus
ENSECAG00000001440	LSM7	66	95.146	ENSMLUG00000013097	-	100	95.146	Myotis_lucifugus
ENSECAG00000001440	LSM7	69	89.815	ENSMLUG00000024002	-	96	90.476	Myotis_lucifugus
ENSECAG00000001440	LSM7	66	96.117	ENSNGAG00000021637	Lsm7	100	96.117	Nannospalax_galili
ENSECAG00000001440	LSM7	60	90.426	ENSNBRG00000001237	-	84	86.667	Neolamprologus_brichardi
ENSECAG00000001440	LSM7	65	90.099	ENSNBRG00000015770	lsm7	80	90.323	Neolamprologus_brichardi
ENSECAG00000001440	LSM7	66	96.117	ENSNLEG00000002265	LSM7	100	96.117	Nomascus_leucogenys
ENSECAG00000001440	LSM7	66	96.117	ENSODEG00000013590	-	100	96.117	Octodon_degus
ENSECAG00000001440	LSM7	66	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSECAG00000001440	LSM7	66	89.320	ENSODEG00000018769	-	100	89.320	Octodon_degus
ENSECAG00000001440	LSM7	69	86.916	ENSONIG00000001801	lsm7	91	88.571	Oreochromis_niloticus
ENSECAG00000001440	LSM7	66	91.262	ENSORLG00000023951	lsm7	100	91.262	Oryzias_latipes
ENSECAG00000001440	LSM7	66	91.262	ENSORLG00020022226	lsm7	100	91.262	Oryzias_latipes_hni
ENSECAG00000001440	LSM7	65	91.089	ENSORLG00015020044	lsm7	94	91.089	Oryzias_latipes_hsok
ENSECAG00000001440	LSM7	66	91.262	ENSOMEG00000012806	lsm7	100	91.262	Oryzias_melastigma
ENSECAG00000001440	LSM7	66	87.379	ENSOGAG00000024373	-	91	87.097	Otolemur_garnettii
ENSECAG00000001440	LSM7	65	96.040	ENSOGAG00000000144	-	99	96.040	Otolemur_garnettii
ENSECAG00000001440	LSM7	66	94.175	ENSOARG00000014013	LSM7	100	94.175	Ovis_aries
ENSECAG00000001440	LSM7	66	96.117	ENSPPAG00000026500	LSM7	100	96.117	Pan_paniscus
ENSECAG00000001440	LSM7	66	95.146	ENSPPRG00000008624	LSM7	100	95.146	Panthera_pardus
ENSECAG00000001440	LSM7	65	95.050	ENSPTIG00000016252	LSM7	98	95.050	Panthera_tigris_altaica
ENSECAG00000001440	LSM7	66	96.117	ENSPTRG00000010233	LSM7	100	96.117	Pan_troglodytes
ENSECAG00000001440	LSM7	66	96.117	ENSPANG00000020668	LSM7	100	96.117	Papio_anubis
ENSECAG00000001440	LSM7	66	93.204	ENSPKIG00000011325	lsm7	100	93.204	Paramormyrops_kingsleyae
ENSECAG00000001440	LSM7	65	94.059	ENSPSIG00000017149	LSM7	89	94.059	Pelodiscus_sinensis
ENSECAG00000001440	LSM7	66	91.262	ENSPMGG00000006498	lsm7	100	91.262	Periophthalmus_magnuspinnatus
ENSECAG00000001440	LSM7	66	95.146	ENSPCIG00000030454	LSM7	100	95.146	Phascolarctos_cinereus
ENSECAG00000001440	LSM7	71	84.685	ENSPFOG00000012467	lsm7	91	89.320	Poecilia_formosa
ENSECAG00000001440	LSM7	69	86.916	ENSPLAG00000000252	lsm7	97	88.571	Poecilia_latipinna
ENSECAG00000001440	LSM7	65	91.089	ENSPMEG00000000587	lsm7	97	88.571	Poecilia_mexicana
ENSECAG00000001440	LSM7	51	75.309	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSECAG00000001440	LSM7	100	62.179	ENSPPYG00000009348	-	100	60.897	Pongo_abelii
ENSECAG00000001440	LSM7	66	96.117	ENSPCOG00000017177	LSM7	100	96.117	Propithecus_coquereli
ENSECAG00000001440	LSM7	66	90.291	ENSPNYG00000006938	lsm7	100	90.291	Pundamilia_nyererei
ENSECAG00000001440	LSM7	66	91.262	ENSPNAG00000010141	lsm7	100	91.262	Pygocentrus_nattereri
ENSECAG00000001440	LSM7	66	96.117	ENSRNOG00000019552	Lsm7	100	96.117	Rattus_norvegicus
ENSECAG00000001440	LSM7	66	96.117	ENSRBIG00000035978	LSM7	100	96.117	Rhinopithecus_bieti
ENSECAG00000001440	LSM7	66	96.117	ENSRROG00000034044	LSM7	100	96.117	Rhinopithecus_roxellana
ENSECAG00000001440	LSM7	55	47.191	YNL147W	-	75	46.512	Saccharomyces_cerevisiae
ENSECAG00000001440	LSM7	66	96.117	ENSSBOG00000034899	LSM7	100	96.117	Saimiri_boliviensis_boliviensis
ENSECAG00000001440	LSM7	66	92.233	ENSSFOG00015006728	lsm7	100	92.233	Scleropages_formosus
ENSECAG00000001440	LSM7	65	91.089	ENSSMAG00000004195	lsm7	93	91.089	Scophthalmus_maximus
ENSECAG00000001440	LSM7	66	91.262	ENSSDUG00000001863	lsm7	100	91.262	Seriola_dumerili
ENSECAG00000001440	LSM7	66	91.262	ENSSLDG00000016339	lsm7	100	91.262	Seriola_lalandi_dorsalis
ENSECAG00000001440	LSM7	66	91.262	ENSSPAG00000015221	lsm7	100	91.262	Stegastes_partitus
ENSECAG00000001440	LSM7	65	96.040	ENSSSCG00000013463	LSM7	99	96.040	Sus_scrofa
ENSECAG00000001440	LSM7	65	93.069	ENSTGUG00000000067	LSM7	100	93.069	Taeniopygia_guttata
ENSECAG00000001440	LSM7	66	91.262	ENSTRUG00000022913	lsm7	100	91.262	Takifugu_rubripes
ENSECAG00000001440	LSM7	66	91.262	ENSTNIG00000015525	lsm7	100	91.262	Tetraodon_nigroviridis
ENSECAG00000001440	LSM7	66	93.204	ENSUAMG00000000912	LSM7	86	93.204	Ursus_americanus
ENSECAG00000001440	LSM7	71	90.090	ENSUMAG00000006556	LSM7	82	92.381	Ursus_maritimus
ENSECAG00000001440	LSM7	65	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSECAG00000001440	LSM7	65	91.176	ENSXCOG00000002572	lsm7	100	91.176	Xiphophorus_couchianus
ENSECAG00000001440	LSM7	66	92.233	ENSXMAG00000018630	lsm7	100	92.233	Xiphophorus_maculatus