EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000003257 (Gene tree)
Gene ID: 100051479
Gene Symbol: LIG4
Alias: -
Full Name: Equus caballus DNA ligase 4 (LIG4)%2C mRNA.
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 2764 bases
Position: chr17:75850964-75853727
Accession: NM_001256929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000002235	RNA_ligase	PF09414.10	2.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000003129	-	2764	-	ENSECAP00000002235	911 (aa)	XP_005601231	F6X700

Gene Model

Click here to download ENSECAG00000003257's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000003257's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000003257	LIG4	100	90.889	ENSG00000174405	LIG4	100	90.889	Homo_sapiens
ENSECAG00000003257	LIG4	99	64.764	ENSAPOG00000000866	lig4	99	64.874	Acanthochromis_polyacanthus
ENSECAG00000003257	LIG4	100	90.121	ENSAMEG00000019685	LIG4	99	90.121	Ailuropoda_melanoleuca
ENSECAG00000003257	LIG4	99	65.604	ENSACIG00000018309	lig4	99	65.714	Amphilophus_citrinellus
ENSECAG00000003257	LIG4	99	64.764	ENSAOCG00000011768	lig4	99	64.874	Amphiprion_ocellaris
ENSECAG00000003257	LIG4	99	64.874	ENSAPEG00000017815	lig4	99	64.984	Amphiprion_percula
ENSECAG00000003257	LIG4	99	64.796	ENSATEG00000005583	lig4	99	64.764	Anabas_testudineus
ENSECAG00000003257	LIG4	97	74.091	ENSAPLG00000001673	LIG4	99	74.091	Anas_platyrhynchos
ENSECAG00000003257	LIG4	99	75.028	ENSACAG00000014566	LIG4	99	75.028	Anolis_carolinensis
ENSECAG00000003257	LIG4	100	89.901	ENSANAG00000012446	LIG4	100	89.901	Aotus_nancymaae
ENSECAG00000003257	LIG4	99	65.165	ENSACLG00000027051	lig4	99	65.275	Astatotilapia_calliptera
ENSECAG00000003257	LIG4	99	64.044	ENSAMXG00000008192	lig4	94	64.044	Astyanax_mexicanus
ENSECAG00000003257	LIG4	100	88.474	ENSBTAG00000015868	LIG4	100	88.474	Bos_taurus
ENSECAG00000003257	LIG4	100	89.243	ENSCJAG00000014689	LIG4	100	89.243	Callithrix_jacchus
ENSECAG00000003257	LIG4	100	91.658	ENSCAFG00000006031	LIG4	100	91.658	Canis_familiaris
ENSECAG00000003257	LIG4	100	91.658	ENSCAFG00020021230	LIG4	100	91.658	Canis_lupus_dingo
ENSECAG00000003257	LIG4	100	88.255	ENSCHIG00000001019	LIG4	100	88.255	Capra_hircus
ENSECAG00000003257	LIG4	99	87.265	ENSCAPG00000006284	LIG4	99	87.265	Cavia_aperea
ENSECAG00000003257	LIG4	100	87.267	ENSCPOG00000014266	LIG4	100	87.267	Cavia_porcellus
ENSECAG00000003257	LIG4	100	89.682	ENSCCAG00000019971	LIG4	100	89.682	Cebus_capucinus
ENSECAG00000003257	LIG4	100	90.450	ENSCATG00000021075	LIG4	100	90.450	Cercocebus_atys
ENSECAG00000003257	LIG4	100	87.816	ENSCLAG00000003376	LIG4	100	87.816	Chinchilla_lanigera
ENSECAG00000003257	LIG4	100	90.779	ENSCSAG00000000211	LIG4	100	90.779	Chlorocebus_sabaeus
ENSECAG00000003257	LIG4	99	77.925	ENSCPBG00000023291	LIG4	100	77.342	Chrysemys_picta_bellii
ENSECAG00000003257	LIG4	68	45.628	ENSCING00000009536	-	95	45.628	Ciona_intestinalis
ENSECAG00000003257	LIG4	83	45.598	ENSCSAVG00000010336	-	98	45.598	Ciona_savignyi
ENSECAG00000003257	LIG4	100	90.340	ENSCANG00000005805	LIG4	100	90.340	Colobus_angolensis_palliatus
ENSECAG00000003257	LIG4	100	86.404	ENSCGRG00001012072	Lig4	100	86.404	Cricetulus_griseus_chok1gshd
ENSECAG00000003257	LIG4	100	86.404	ENSCGRG00000013417	Lig4	100	86.404	Cricetulus_griseus_crigri
ENSECAG00000003257	LIG4	97	66.023	ENSCSEG00000013905	lig4	95	66.023	Cynoglossus_semilaevis
ENSECAG00000003257	LIG4	99	65.559	ENSCVAG00000007896	lig4	99	65.559	Cyprinodon_variegatus
ENSECAG00000003257	LIG4	99	63.747	ENSDARG00000060620	lig4	98	63.747	Danio_rerio
ENSECAG00000003257	LIG4	100	89.254	ENSDNOG00000000513	LIG4	100	89.254	Dasypus_novemcinctus
ENSECAG00000003257	LIG4	100	87.157	ENSDORG00000027303	Lig4	100	87.157	Dipodomys_ordii
ENSECAG00000003257	LIG4	89	31.272	FBgn0030506	Lig4	91	31.272	Drosophila_melanogaster
ENSECAG00000003257	LIG4	99	85.144	ENSETEG00000015563	LIG4	100	85.477	Echinops_telfairi
ENSECAG00000003257	LIG4	99	43.737	ENSEBUG00000014243	lig4	99	43.638	Eptatretus_burgeri
ENSECAG00000003257	LIG4	100	99.122	ENSEASG00005022073	LIG4	100	99.122	Equus_asinus_asinus
ENSECAG00000003257	LIG4	99	66.152	ENSELUG00000006787	lig4	99	66.152	Esox_lucius
ENSECAG00000003257	LIG4	100	90.560	ENSFCAG00000031985	LIG4	100	90.560	Felis_catus
ENSECAG00000003257	LIG4	89	74.662	ENSFALG00000004214	LIG4	98	74.662	Ficedula_albicollis
ENSECAG00000003257	LIG4	100	88.145	ENSFDAG00000008973	LIG4	100	88.145	Fukomys_damarensis
ENSECAG00000003257	LIG4	99	64.895	ENSFHEG00000007398	lig4	89	64.895	Fundulus_heteroclitus
ENSECAG00000003257	LIG4	85	63.671	ENSGMOG00000012843	lig4	99	63.671	Gadus_morhua
ENSECAG00000003257	LIG4	100	73.690	ENSGALG00000016854	LIG4	100	73.690	Gallus_gallus
ENSECAG00000003257	LIG4	99	64.588	ENSGAFG00000019779	lig4	95	64.615	Gambusia_affinis
ENSECAG00000003257	LIG4	99	62.680	ENSGACG00000014135	lig4	99	62.901	Gasterosteus_aculeatus
ENSECAG00000003257	LIG4	100	90.670	ENSGGOG00000027771	LIG4	100	90.670	Gorilla_gorilla
ENSECAG00000003257	LIG4	99	64.945	ENSHBUG00000006245	lig4	99	65.055	Haplochromis_burtoni
ENSECAG00000003257	LIG4	100	88.145	ENSHGLG00000000718	LIG4	100	88.145	Heterocephalus_glaber_female
ENSECAG00000003257	LIG4	100	88.145	ENSHGLG00100003265	LIG4	100	88.145	Heterocephalus_glaber_male
ENSECAG00000003257	LIG4	99	63.187	ENSHCOG00000012010	lig4	99	63.187	Hippocampus_comes
ENSECAG00000003257	LIG4	99	64.874	ENSIPUG00000013748	lig4	99	64.874	Ictalurus_punctatus
ENSECAG00000003257	LIG4	100	88.584	ENSSTOG00000024303	LIG4	100	88.584	Ictidomys_tridecemlineatus
ENSECAG00000003257	LIG4	100	86.937	ENSJJAG00000006750	Lig4	100	86.937	Jaculus_jaculus
ENSECAG00000003257	LIG4	99	64.009	ENSKMAG00000001149	lig4	99	64.009	Kryptolebias_marmoratus
ENSECAG00000003257	LIG4	91	64.543	ENSLBEG00000014578	lig4	100	64.663	Labrus_bergylta
ENSECAG00000003257	LIG4	99	71.018	ENSLACG00000003282	LIG4	99	71.018	Latimeria_chalumnae
ENSECAG00000003257	LIG4	99	69.956	ENSLOCG00000008901	lig4	98	69.956	Lepisosteus_oculatus
ENSECAG00000003257	LIG4	100	87.623	ENSLAFG00000031152	LIG4	100	87.623	Loxodonta_africana
ENSECAG00000003257	LIG4	100	90.670	ENSMFAG00000037235	LIG4	100	90.670	Macaca_fascicularis
ENSECAG00000003257	LIG4	100	90.670	ENSMMUG00000008874	LIG4	100	90.670	Macaca_mulatta
ENSECAG00000003257	LIG4	100	90.670	ENSMNEG00000023575	LIG4	100	90.670	Macaca_nemestrina
ENSECAG00000003257	LIG4	100	90.560	ENSMLEG00000026720	LIG4	100	90.560	Mandrillus_leucophaeus
ENSECAG00000003257	LIG4	99	64.945	ENSMAMG00000008472	lig4	99	65.055	Mastacembelus_armatus
ENSECAG00000003257	LIG4	99	65.165	ENSMZEG00005001855	lig4	99	65.275	Maylandia_zebra
ENSECAG00000003257	LIG4	100	74.127	ENSMGAG00000015532	LIG4	100	74.127	Meleagris_gallopavo
ENSECAG00000003257	LIG4	100	83.754	ENSMOCG00000019000	Lig4	100	83.754	Microtus_ochrogaster
ENSECAG00000003257	LIG4	99	63.898	ENSMMOG00000004390	lig4	99	63.898	Mola_mola
ENSECAG00000003257	LIG4	100	83.315	ENSMODG00000025064	LIG4	100	83.882	Monodelphis_domestica
ENSECAG00000003257	LIG4	99	64.673	ENSMALG00000008555	lig4	99	64.673	Monopterus_albus
ENSECAG00000003257	LIG4	100	85.840	MGP_CAROLIEiJ_G0030809	Lig4	100	85.840	Mus_caroli
ENSECAG00000003257	LIG4	100	85.510	ENSMUSG00000049717	Lig4	100	85.510	Mus_musculus
ENSECAG00000003257	LIG4	100	85.620	MGP_PahariEiJ_G0021270	Lig4	100	85.620	Mus_pahari
ENSECAG00000003257	LIG4	100	85.510	MGP_SPRETEiJ_G0031917	Lig4	100	85.510	Mus_spretus
ENSECAG00000003257	LIG4	100	89.791	ENSMPUG00000018675	LIG4	100	89.791	Mustela_putorius_furo
ENSECAG00000003257	LIG4	100	91.109	ENSMLUG00000001267	LIG4	100	91.109	Myotis_lucifugus
ENSECAG00000003257	LIG4	100	86.608	ENSNGAG00000013258	Lig4	100	86.608	Nannospalax_galili
ENSECAG00000003257	LIG4	99	65.495	ENSNBRG00000021252	lig4	99	65.495	Neolamprologus_brichardi
ENSECAG00000003257	LIG4	100	90.670	ENSNLEG00000007888	LIG4	100	90.670	Nomascus_leucogenys
ENSECAG00000003257	LIG4	100	86.937	ENSOPRG00000005765	LIG4	100	86.937	Ochotona_princeps
ENSECAG00000003257	LIG4	100	86.498	ENSODEG00000019683	LIG4	100	86.498	Octodon_degus
ENSECAG00000003257	LIG4	99	64.945	ENSONIG00000011969	lig4	98	65.055	Oreochromis_niloticus
ENSECAG00000003257	LIG4	100	89.023	ENSOCUG00000015734	LIG4	100	89.023	Oryctolagus_cuniculus
ENSECAG00000003257	LIG4	99	63.626	ENSORLG00000004041	lig4	99	63.626	Oryzias_latipes
ENSECAG00000003257	LIG4	99	64.066	ENSORLG00020019607	lig4	99	64.066	Oryzias_latipes_hni
ENSECAG00000003257	LIG4	99	63.516	ENSORLG00015017754	lig4	99	63.516	Oryzias_latipes_hsok
ENSECAG00000003257	LIG4	74	68.491	ENSOMEG00000003459	lig4	98	68.491	Oryzias_melastigma
ENSECAG00000003257	LIG4	100	89.254	ENSOGAG00000032120	LIG4	99	89.254	Otolemur_garnettii
ENSECAG00000003257	LIG4	82	89.799	ENSOARG00000005590	LIG4	98	89.799	Ovis_aries
ENSECAG00000003257	LIG4	100	90.670	ENSPPAG00000032998	LIG4	100	90.670	Pan_paniscus
ENSECAG00000003257	LIG4	100	90.560	ENSPPRG00000017804	LIG4	100	90.560	Panthera_pardus
ENSECAG00000003257	LIG4	100	90.560	ENSPTIG00000010051	LIG4	100	90.560	Panthera_tigris_altaica
ENSECAG00000003257	LIG4	100	90.779	ENSPTRG00000006025	LIG4	100	90.779	Pan_troglodytes
ENSECAG00000003257	LIG4	100	90.560	ENSPANG00000007562	LIG4	100	90.560	Papio_anubis
ENSECAG00000003257	LIG4	99	66.630	ENSPKIG00000011645	lig4	98	66.630	Paramormyrops_kingsleyae
ENSECAG00000003257	LIG4	99	77.253	ENSPSIG00000001504	LIG4	99	77.253	Pelodiscus_sinensis
ENSECAG00000003257	LIG4	99	62.901	ENSPMGG00000013486	lig4	99	62.473	Periophthalmus_magnuspinnatus
ENSECAG00000003257	LIG4	100	85.746	ENSPEMG00000000076	Lig4	100	85.746	Peromyscus_maniculatus_bairdii
ENSECAG00000003257	LIG4	100	83.224	ENSPCIG00000021882	LIG4	100	83.224	Phascolarctos_cinereus
ENSECAG00000003257	LIG4	99	64.850	ENSPFOG00000000797	lig4	99	64.615	Poecilia_formosa
ENSECAG00000003257	LIG4	99	64.739	ENSPLAG00000001196	lig4	99	64.505	Poecilia_latipinna
ENSECAG00000003257	LIG4	99	64.850	ENSPMEG00000021353	lig4	99	64.725	Poecilia_mexicana
ENSECAG00000003257	LIG4	99	64.627	ENSPREG00000007323	lig4	99	64.654	Poecilia_reticulata
ENSECAG00000003257	LIG4	100	90.670	ENSPPYG00000005540	LIG4	100	90.670	Pongo_abelii
ENSECAG00000003257	LIG4	100	90.011	ENSPVAG00000016403	LIG4	100	90.011	Pteropus_vampyrus
ENSECAG00000003257	LIG4	99	65.055	ENSPNYG00000009660	lig4	99	65.165	Pundamilia_nyererei
ENSECAG00000003257	LIG4	100	63.706	ENSPNAG00000028056	lig4	100	63.816	Pygocentrus_nattereri
ENSECAG00000003257	LIG4	100	63.706	ENSPNAG00000028069	LIG4	100	63.816	Pygocentrus_nattereri
ENSECAG00000003257	LIG4	100	85.071	ENSRNOG00000014605	Lig4	100	85.071	Rattus_norvegicus
ENSECAG00000003257	LIG4	100	88.913	ENSRBIG00000039962	LIG4	100	88.913	Rhinopithecus_bieti
ENSECAG00000003257	LIG4	100	90.231	ENSRROG00000006040	LIG4	100	90.231	Rhinopithecus_roxellana
ENSECAG00000003257	LIG4	100	89.572	ENSSBOG00000019029	LIG4	100	89.572	Saimiri_boliviensis_boliviensis
ENSECAG00000003257	LIG4	100	79.144	ENSSHAG00000009525	LIG4	100	79.825	Sarcophilus_harrisii
ENSECAG00000003257	LIG4	100	64.738	ENSSFOG00015012835	lig4	100	64.738	Scleropages_formosus
ENSECAG00000003257	LIG4	99	62.680	ENSSMAG00000011267	lig4	99	62.680	Scophthalmus_maximus
ENSECAG00000003257	LIG4	99	65.299	ENSSDUG00000010343	lig4	98	65.299	Seriola_dumerili
ENSECAG00000003257	LIG4	99	63.516	ENSSLDG00000003239	lig4	99	63.516	Seriola_lalandi_dorsalis
ENSECAG00000003257	LIG4	100	81.619	ENSSARG00000006573	LIG4	100	81.619	Sorex_araneus
ENSECAG00000003257	LIG4	93	75.829	ENSSPUG00000002444	LIG4	100	75.829	Sphenodon_punctatus
ENSECAG00000003257	LIG4	99	64.654	ENSSPAG00000001609	lig4	99	64.654	Stegastes_partitus
ENSECAG00000003257	LIG4	100	88.474	ENSSSCG00000009540	LIG4	100	88.474	Sus_scrofa
ENSECAG00000003257	LIG4	99	74.336	ENSTGUG00000010795	LIG4	99	74.336	Taeniopygia_guttata
ENSECAG00000003257	LIG4	99	64.286	ENSTRUG00000009984	lig4	99	64.286	Takifugu_rubripes
ENSECAG00000003257	LIG4	99	64.396	ENSTNIG00000010348	lig4	99	64.615	Tetraodon_nigroviridis
ENSECAG00000003257	LIG4	100	90.450	ENSTBEG00000017741	LIG4	100	90.450	Tupaia_belangeri
ENSECAG00000003257	LIG4	100	89.352	ENSTTRG00000012660	LIG4	100	89.352	Tursiops_truncatus
ENSECAG00000003257	LIG4	100	90.231	ENSUAMG00000003773	LIG4	100	90.231	Ursus_americanus
ENSECAG00000003257	LIG4	99	71.696	ENSXETG00000002654	lig4	99	71.696	Xenopus_tropicalis
ENSECAG00000003257	LIG4	99	64.739	ENSXCOG00000017401	lig4	99	64.286	Xiphophorus_couchianus
ENSECAG00000003257	LIG4	99	65.111	ENSXMAG00000015142	lig4	99	64.654	Xiphophorus_maculatus