EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000003452 (Gene tree)
Gene ID: 100071995
Gene Symbol: PABPC5
Alias: -
Full Name: Equus caballus poly(A) binding protein cytoplasmic 5 (PABPC5)%2C mRNA.
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 1433 bases
Position: chrX:75373938-75375370
Accession: NM_001257185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000002349	RRM_5	PF13893.6	1.3e-11	1	2
ENSECAP00000002349	RRM_5	PF13893.6	1.3e-11	2	2
ENSECAP00000002349	RRM_1	PF00076.22	8.8e-78	1	4
ENSECAP00000002349	RRM_1	PF00076.22	8.8e-78	2	4
ENSECAP00000002349	RRM_1	PF00076.22	8.8e-78	3	4
ENSECAP00000002349	RRM_1	PF00076.22	8.8e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000003308	-	1433	-	ENSECAP00000002349	382 (aa)	XP_005614336	F6YM53

Gene Model

Click here to download ENSECAG00000003452's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03013	RNA transport	KEGG
ecb03015	mRNA surveillance pathway	KEGG
ecb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000003452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000003452	PABPC5	96	62.637	ENSECAG00000031416	PABPC4L	98	62.640
ENSECAG00000003452	PABPC5	54	31.092	ENSECAG00000009970	TIAL1	87	30.172
ENSECAG00000003452	PABPC5	94	35.802	ENSECAG00000020142	ELAVL2	82	35.802
ENSECAG00000003452	PABPC5	97	64.420	ENSECAG00000020699	PABPC1	58	65.449
ENSECAG00000003452	PABPC5	83	61.935	ENSECAG00000040139	-	58	61.935
ENSECAG00000003452	PABPC5	97	43.158	ENSECAG00000038200	-	53	45.506
ENSECAG00000003452	PABPC5	95	67.769	ENSECAG00000009396	PABPC4	56	67.978
ENSECAG00000003452	PABPC5	96	57.971	ENSECAG00000002620	-	93	59.896

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000003452	PABPC5	99	97.638	ENSG00000174740	PABPC5	99	97.638	Homo_sapiens
ENSECAG00000003452	PABPC5	99	98.163	ENSAMEG00000020114	PABPC5	100	98.163	Ailuropoda_melanoleuca
ENSECAG00000003452	PABPC5	99	97.638	ENSANAG00000005063	PABPC5	99	97.638	Aotus_nancymaae
ENSECAG00000003452	PABPC5	100	97.120	ENSBTAG00000019942	PABPC5	100	97.120	Bos_taurus
ENSECAG00000003452	PABPC5	99	97.113	ENSCJAG00000003665	PABPC5	99	97.113	Callithrix_jacchus
ENSECAG00000003452	PABPC5	100	97.644	ENSCAFG00000017452	PABPC5	100	97.644	Canis_familiaris
ENSECAG00000003452	PABPC5	100	97.120	ENSCHIG00000019004	PABPC5	100	97.120	Capra_hircus
ENSECAG00000003452	PABPC5	100	97.120	ENSTSYG00000036351	PABPC5	100	97.120	Carlito_syrichta
ENSECAG00000003452	PABPC5	99	87.958	ENSCAPG00000010714	PABPC5	100	87.958	Cavia_aperea
ENSECAG00000003452	PABPC5	100	94.241	ENSCPOG00000002555	PABPC5	100	94.241	Cavia_porcellus
ENSECAG00000003452	PABPC5	99	97.638	ENSCCAG00000032154	PABPC5	99	97.638	Cebus_capucinus
ENSECAG00000003452	PABPC5	99	97.375	ENSCATG00000043083	PABPC5	99	97.375	Cercocebus_atys
ENSECAG00000003452	PABPC5	100	95.550	ENSCLAG00000000647	PABPC5	100	95.550	Chinchilla_lanigera
ENSECAG00000003452	PABPC5	99	97.375	ENSCSAG00000000065	PABPC5	99	97.375	Chlorocebus_sabaeus
ENSECAG00000003452	PABPC5	99	97.375	ENSCANG00000011473	PABPC5	99	97.375	Colobus_angolensis_palliatus
ENSECAG00000003452	PABPC5	100	93.979	ENSCGRG00000018699	Pabpc5	100	93.979	Cricetulus_griseus_crigri
ENSECAG00000003452	PABPC5	100	78.590	ENSETEG00000011832	PABPC5	100	78.590	Echinops_telfairi
ENSECAG00000003452	PABPC5	100	100.000	ENSEASG00005014396	PABPC5	100	100.000	Equus_asinus_asinus
ENSECAG00000003452	PABPC5	100	97.906	ENSFCAG00000004998	PABPC5	100	97.906	Felis_catus
ENSECAG00000003452	PABPC5	100	96.597	ENSFDAG00000000126	PABPC5	100	96.597	Fukomys_damarensis
ENSECAG00000003452	PABPC5	99	97.638	ENSGGOG00000007622	PABPC5	99	97.638	Gorilla_gorilla
ENSECAG00000003452	PABPC5	95	96.330	ENSJJAG00000011960	Pabpc5	100	96.330	Jaculus_jaculus
ENSECAG00000003452	PABPC5	99	97.375	ENSMFAG00000024561	PABPC5	99	97.375	Macaca_fascicularis
ENSECAG00000003452	PABPC5	99	97.375	ENSMMUG00000011562	PABPC5	99	97.375	Macaca_mulatta
ENSECAG00000003452	PABPC5	99	97.375	ENSMNEG00000037604	PABPC5	99	97.375	Macaca_nemestrina
ENSECAG00000003452	PABPC5	99	97.375	ENSMLEG00000028318	PABPC5	99	97.375	Mandrillus_leucophaeus
ENSECAG00000003452	PABPC5	100	96.335	ENSMICG00000041706	PABPC5	100	96.335	Microcebus_murinus
ENSECAG00000003452	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSECAG00000003452	PABPC5	99	93.947	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	Mus_caroli
ENSECAG00000003452	PABPC5	99	94.474	ENSMUSG00000034732	Pabpc5	99	94.474	Mus_musculus
ENSECAG00000003452	PABPC5	100	94.764	MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	Mus_pahari
ENSECAG00000003452	PABPC5	99	94.474	MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	Mus_spretus
ENSECAG00000003452	PABPC5	100	97.120	ENSMPUG00000018465	PABPC5	100	97.120	Mustela_putorius_furo
ENSECAG00000003452	PABPC5	100	96.597	ENSMLUG00000008244	PABPC5	100	96.597	Myotis_lucifugus
ENSECAG00000003452	PABPC5	95	95.413	ENSNGAG00000004371	Pabpc5	100	95.413	Nannospalax_galili
ENSECAG00000003452	PABPC5	99	97.638	ENSNLEG00000035086	PABPC5	99	97.638	Nomascus_leucogenys
ENSECAG00000003452	PABPC5	98	98.190	ENSOPRG00000000856	PABPC5	100	98.190	Ochotona_princeps
ENSECAG00000003452	PABPC5	100	97.382	ENSOCUG00000010919	PABPC5	100	97.382	Oryctolagus_cuniculus
ENSECAG00000003452	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSECAG00000003452	PABPC5	100	97.382	ENSOARG00000010260	PABPC5	100	97.382	Ovis_aries
ENSECAG00000003452	PABPC5	99	97.375	ENSPPAG00000007378	PABPC5	99	97.375	Pan_paniscus
ENSECAG00000003452	PABPC5	100	97.906	ENSPPRG00000010742	PABPC5	100	97.906	Panthera_pardus
ENSECAG00000003452	PABPC5	100	97.906	ENSPTIG00000001480	PABPC5	100	97.906	Panthera_tigris_altaica
ENSECAG00000003452	PABPC5	99	97.638	ENSPTRG00000022078	PABPC5	99	97.638	Pan_troglodytes
ENSECAG00000003452	PABPC5	99	97.375	ENSPANG00000018282	PABPC5	99	97.375	Papio_anubis
ENSECAG00000003452	PABPC5	100	94.503	ENSPEMG00000000171	Pabpc5	100	94.503	Peromyscus_maniculatus_bairdii
ENSECAG00000003452	PABPC5	99	97.638	ENSPPYG00000020526	PABPC5	99	97.638	Pongo_abelii
ENSECAG00000003452	PABPC5	99	97.455	ENSPCAG00000015577	PABPC5	100	97.455	Procavia_capensis
ENSECAG00000003452	PABPC5	100	97.120	ENSPCOG00000000676	PABPC5	100	97.120	Propithecus_coquereli
ENSECAG00000003452	PABPC5	100	98.691	ENSPVAG00000006465	PABPC5	100	98.691	Pteropus_vampyrus
ENSECAG00000003452	PABPC5	100	94.241	ENSRNOG00000003354	Pabpc5	100	94.241	Rattus_norvegicus
ENSECAG00000003452	PABPC5	99	97.375	ENSRBIG00000011760	PABPC5	99	97.375	Rhinopithecus_bieti
ENSECAG00000003452	PABPC5	99	97.375	ENSRROG00000036708	PABPC5	99	97.375	Rhinopithecus_roxellana
ENSECAG00000003452	PABPC5	99	97.638	ENSSBOG00000008658	PABPC5	99	97.638	Saimiri_boliviensis_boliviensis
ENSECAG00000003452	PABPC5	100	94.764	ENSSARG00000014012	PABPC5	100	94.764	Sorex_araneus
ENSECAG00000003452	PABPC5	100	97.644	ENSSSCG00000040194	PABPC5	100	97.644	Sus_scrofa
ENSECAG00000003452	PABPC5	100	97.906	ENSTBEG00000016482	PABPC5	100	97.906	Tupaia_belangeri
ENSECAG00000003452	PABPC5	100	97.644	ENSUAMG00000013627	PABPC5	100	97.644	Ursus_americanus
ENSECAG00000003452	PABPC5	100	97.382	ENSUMAG00000023934	PABPC5	100	97.382	Ursus_maritimus
ENSECAG00000003452	PABPC5	100	97.906	ENSVPAG00000001063	PABPC5	100	97.906	Vicugna_pacos
ENSECAG00000003452	PABPC5	100	97.906	ENSVVUG00000013172	PABPC5	100	97.906	Vulpes_vulpes