EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000004313 (Gene tree)
Gene ID: 100055474
Gene Symbol: SMG7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 81314 bases
Position: chr5:17701740-17783053
Accession: 23340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000024697	EST1	PF10374.9	1e-24	1	1
ENSECAP00000004684	EST1	PF10374.9	1e-24	1	1
ENSECAP00000004643	EST1	PF10374.9	1.1e-24	1	1
ENSECAP00000033554	EST1	PF10374.9	1.1e-24	1	1
ENSECAP00000034206	EST1	PF10374.9	1.1e-24	1	1
ENSECAP00000025626	EST1	PF10374.9	4.4e-22	1	1
ENSECAP00000025626	EST1_DNA_bind	PF10373.9	2.3e-55	1	1
ENSECAP00000004684	EST1_DNA_bind	PF10373.9	2.4e-55	1	1
ENSECAP00000004643	EST1_DNA_bind	PF10373.9	2.5e-55	1	1
ENSECAP00000033554	EST1_DNA_bind	PF10373.9	2.6e-55	1	1
ENSECAP00000034206	EST1_DNA_bind	PF10373.9	2.6e-55	1	1
ENSECAP00000024697	EST1_DNA_bind	PF10373.9	5e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000038718	-	3303	-	ENSECAP00000025626	1093 (aa)	XP_023496464	UPI000C9DF24B
ENSECAT00000006528	-	4318	-	ENSECAP00000004643	1141 (aa)	-	F7B512
ENSECAT00000006579	-	4307	-	ENSECAP00000004684	1120 (aa)	XP_001489684	F7B037
ENSECAT00000057454	-	4457	-	ENSECAP00000034206	1170 (aa)	XP_005609837	UPI0003ACA8BB
ENSECAT00000051366	-	3285	-	ENSECAP00000024697	1094 (aa)	-	-
ENSECAT00000045305	-	4637	-	ENSECAP00000033554	1170 (aa)	XP_005609837	UPI0003ACA8BB

Gene Model

Click here to download ENSECAG00000004313's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000004313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000004313	SMG7	100	97.863	ENSG00000116698	SMG7	100	99.333	Homo_sapiens
ENSECAG00000004313	SMG7	86	89.697	ENSAPOG00000009611	smg7	88	89.697	Acanthochromis_polyacanthus
ENSECAG00000004313	SMG7	99	94.055	ENSAMEG00000002357	SMG7	100	94.148	Ailuropoda_melanoleuca
ENSECAG00000004313	SMG7	94	89.474	ENSACIG00000015152	smg7	93	89.735	Amphilophus_citrinellus
ENSECAG00000004313	SMG7	97	88.131	ENSAOCG00000013538	smg7	94	88.358	Amphiprion_ocellaris
ENSECAG00000004313	SMG7	97	88.131	ENSAPEG00000007851	smg7	94	88.358	Amphiprion_percula
ENSECAG00000004313	SMG7	99	62.869	ENSATEG00000006931	smg7	99	65.106	Anabas_testudineus
ENSECAG00000004313	SMG7	97	97.590	ENSAPLG00000015811	SMG7	93	97.879	Anas_platyrhynchos
ENSECAG00000004313	SMG7	97	95.536	ENSACAG00000014989	SMG7	96	95.808	Anolis_carolinensis
ENSECAG00000004313	SMG7	97	97.554	ENSANAG00000028114	SMG7	100	93.914	Aotus_nancymaae
ENSECAG00000004313	SMG7	97	88.131	ENSACLG00000022079	smg7	94	88.358	Astatotilapia_calliptera
ENSECAG00000004313	SMG7	97	80.928	ENSAMXG00000020809	smg7	99	67.308	Astyanax_mexicanus
ENSECAG00000004313	SMG7	100	97.265	ENSBTAG00000008003	SMG7	100	97.265	Bos_taurus
ENSECAG00000004313	SMG7	99	97.432	ENSCJAG00000005135	SMG7	100	97.427	Callithrix_jacchus
ENSECAG00000004313	SMG7	100	98.205	ENSCAFG00000013276	SMG7	100	98.205	Canis_familiaris
ENSECAG00000004313	SMG7	100	98.205	ENSCAFG00020015475	SMG7	100	98.205	Canis_lupus_dingo
ENSECAG00000004313	SMG7	99	97.225	ENSCHIG00000018192	SMG7	99	97.264	Capra_hircus
ENSECAG00000004313	SMG7	100	97.094	ENSTSYG00000002667	SMG7	100	97.094	Carlito_syrichta
ENSECAG00000004313	SMG7	99	97.427	ENSCPOG00000008906	SMG7	100	97.427	Cavia_porcellus
ENSECAG00000004313	SMG7	99	93.611	ENSCCAG00000028596	SMG7	100	93.712	Cebus_capucinus
ENSECAG00000004313	SMG7	100	98.034	ENSCATG00000011063	SMG7	100	98.034	Cercocebus_atys
ENSECAG00000004313	SMG7	100	97.108	ENSCLAG00000010751	SMG7	100	97.108	Chinchilla_lanigera
ENSECAG00000004313	SMG7	100	97.863	ENSCSAG00000012654	SMG7	100	97.863	Chlorocebus_sabaeus
ENSECAG00000004313	SMG7	89	97.491	ENSCHOG00000010522	SMG7	87	97.834	Choloepus_hoffmanni
ENSECAG00000004313	SMG7	97	96.429	ENSCPBG00000015724	SMG7	93	96.707	Chrysemys_picta_bellii
ENSECAG00000004313	SMG7	99	93.878	ENSCANG00000015680	SMG7	100	93.974	Colobus_angolensis_palliatus
ENSECAG00000004313	SMG7	99	97.802	ENSCGRG00001013705	Smg7	100	96.144	Cricetulus_griseus_chok1gshd
ENSECAG00000004313	SMG7	98	97.695	ENSCGRG00000018401	Smg7	100	96.084	Cricetulus_griseus_crigri
ENSECAG00000004313	SMG7	96	81.948	ENSCVAG00000011842	smg7	95	81.948	Cyprinodon_variegatus
ENSECAG00000004313	SMG7	97	89.911	ENSDARG00000060767	smg7	94	90.149	Danio_rerio
ENSECAG00000004313	SMG7	100	96.757	ENSDORG00000007331	Smg7	100	96.757	Dipodomys_ordii
ENSECAG00000004313	SMG7	97	96.014	ENSETEG00000002654	SMG7	100	96.014	Echinops_telfairi
ENSECAG00000004313	SMG7	100	99.915	ENSEASG00005006524	SMG7	100	99.915	Equus_asinus_asinus
ENSECAG00000004313	SMG7	97	96.471	ENSEEUG00000002024	SMG7	94	96.471	Erinaceus_europaeus
ENSECAG00000004313	SMG7	97	89.021	ENSELUG00000010293	smg7	94	89.254	Esox_lucius
ENSECAG00000004313	SMG7	100	98.335	ENSFCAG00000010900	SMG7	100	98.504	Felis_catus
ENSECAG00000004313	SMG7	96	97.819	ENSFALG00000003047	SMG7	93	98.119	Ficedula_albicollis
ENSECAG00000004313	SMG7	99	97.040	ENSFDAG00000012121	SMG7	99	97.059	Fukomys_damarensis
ENSECAG00000004313	SMG7	97	84.366	ENSFHEG00000011073	smg7	93	84.570	Fundulus_heteroclitus
ENSECAG00000004313	SMG7	94	86.053	ENSGMOG00000004916	smg7	85	86.269	Gadus_morhua
ENSECAG00000004313	SMG7	97	97.024	ENSGALG00000004667	SMG7	93	98.187	Gallus_gallus
ENSECAG00000004313	SMG7	99	61.430	ENSGAFG00000019000	smg7	99	62.835	Gambusia_affinis
ENSECAG00000004313	SMG7	94	82.044	ENSGACG00000001634	smg7	95	82.044	Gasterosteus_aculeatus
ENSECAG00000004313	SMG7	100	97.692	ENSGGOG00000002342	SMG7	100	97.692	Gorilla_gorilla
ENSECAG00000004313	SMG7	97	88.131	ENSHBUG00000003726	smg7	94	88.358	Haplochromis_burtoni
ENSECAG00000004313	SMG7	99	97.317	ENSHGLG00000009353	SMG7	100	97.326	Heterocephalus_glaber_female
ENSECAG00000004313	SMG7	99	95.652	ENSHGLG00100009637	-	100	95.722	Heterocephalus_glaber_male
ENSECAG00000004313	SMG7	100	89.308	ENSHGLG00100004878	-	100	89.308	Heterocephalus_glaber_male
ENSECAG00000004313	SMG7	97	80.977	ENSIPUG00000016997	smg7	99	67.926	Ictalurus_punctatus
ENSECAG00000004313	SMG7	100	97.984	ENSSTOG00000000401	SMG7	100	97.984	Ictidomys_tridecemlineatus
ENSECAG00000004313	SMG7	100	95.530	ENSJJAG00000012351	Smg7	100	95.530	Jaculus_jaculus
ENSECAG00000004313	SMG7	94	79.100	ENSKMAG00000004900	smg7	93	79.935	Kryptolebias_marmoratus
ENSECAG00000004313	SMG7	50	64.974	ENSLBEG00000005220	-	65	77.407	Labrus_bergylta
ENSECAG00000004313	SMG7	97	82.597	ENSLBEG00000002983	smg7	95	82.597	Labrus_bergylta
ENSECAG00000004313	SMG7	97	92.121	ENSLACG00000000972	SMG7	96	92.378	Latimeria_chalumnae
ENSECAG00000004313	SMG7	97	84.290	ENSLOCG00000002010	smg7	94	84.498	Lepisosteus_oculatus
ENSECAG00000004313	SMG7	99	97.527	ENSLAFG00000008186	SMG7	100	97.563	Loxodonta_africana
ENSECAG00000004313	SMG7	100	98.160	ENSMFAG00000031653	SMG7	100	98.160	Macaca_fascicularis
ENSECAG00000004313	SMG7	100	98.034	ENSMMUG00000018458	SMG7	100	98.034	Macaca_mulatta
ENSECAG00000004313	SMG7	99	93.966	ENSMNEG00000034798	SMG7	100	94.061	Macaca_nemestrina
ENSECAG00000004313	SMG7	100	98.034	ENSMLEG00000037170	SMG7	100	98.034	Mandrillus_leucophaeus
ENSECAG00000004313	SMG7	84	89.124	ENSMAMG00000018733	smg7	79	89.362	Mastacembelus_armatus
ENSECAG00000004313	SMG7	97	88.131	ENSMZEG00005015247	smg7	94	88.358	Maylandia_zebra
ENSECAG00000004313	SMG7	95	97.305	ENSMGAG00000001561	SMG7	92	97.305	Meleagris_gallopavo
ENSECAG00000004313	SMG7	100	96.582	ENSMAUG00000019484	Smg7	100	96.582	Mesocricetus_auratus
ENSECAG00000004313	SMG7	99	97.882	ENSMICG00000007145	SMG7	100	97.998	Microcebus_murinus
ENSECAG00000004313	SMG7	100	96.231	ENSMOCG00000020748	Smg7	100	96.231	Microtus_ochrogaster
ENSECAG00000004313	SMG7	97	87.879	ENSMMOG00000001524	smg7	93	88.110	Mola_mola
ENSECAG00000004313	SMG7	89	96.736	ENSMODG00000007139	SMG7	95	97.015	Monodelphis_domestica
ENSECAG00000004313	SMG7	96	68.159	ENSMALG00000000061	smg7	88	86.628	Monopterus_albus
ENSECAG00000004313	SMG7	100	96.231	MGP_CAROLIEiJ_G0014704	Smg7	100	96.231	Mus_caroli
ENSECAG00000004313	SMG7	100	96.056	ENSMUSG00000042772	Smg7	100	96.056	Mus_musculus
ENSECAG00000004313	SMG7	100	96.056	MGP_PahariEiJ_G0027940	Smg7	100	96.056	Mus_pahari
ENSECAG00000004313	SMG7	100	96.144	MGP_SPRETEiJ_G0015511	Smg7	100	96.144	Mus_spretus
ENSECAG00000004313	SMG7	99	98.150	ENSMPUG00000011732	SMG7	97	98.128	Mustela_putorius_furo
ENSECAG00000004313	SMG7	99	97.529	ENSMLUG00000015417	SMG7	99	97.529	Myotis_lucifugus
ENSECAG00000004313	SMG7	98	98.271	ENSNGAG00000009836	Smg7	100	96.171	Nannospalax_galili
ENSECAG00000004313	SMG7	95	77.044	ENSNBRG00000024343	smg7	98	70.476	Neolamprologus_brichardi
ENSECAG00000004313	SMG7	100	98.034	ENSNLEG00000018018	SMG7	100	98.034	Nomascus_leucogenys
ENSECAG00000004313	SMG7	74	96.552	ENSMEUG00000004681	SMG7	73	98.214	Notamacropus_eugenii
ENSECAG00000004313	SMG7	93	96.061	ENSOPRG00000013942	SMG7	90	96.341	Ochotona_princeps
ENSECAG00000004313	SMG7	100	97.020	ENSODEG00000010390	SMG7	100	97.020	Octodon_degus
ENSECAG00000004313	SMG7	97	88.131	ENSONIG00000000277	smg7	93	88.358	Oreochromis_niloticus
ENSECAG00000004313	SMG7	96	97.214	ENSOANG00000000994	SMG7	96	97.508	Ornithorhynchus_anatinus
ENSECAG00000004313	SMG7	100	95.924	ENSOCUG00000005887	SMG7	92	96.175	Oryctolagus_cuniculus
ENSECAG00000004313	SMG7	99	62.052	ENSORLG00000007314	smg7	70	92.763	Oryzias_latipes
ENSECAG00000004313	SMG7	97	85.163	ENSORLG00020015779	smg7	70	92.763	Oryzias_latipes_hni
ENSECAG00000004313	SMG7	96	86.626	ENSORLG00015012289	smg7	89	86.850	Oryzias_latipes_hsok
ENSECAG00000004313	SMG7	99	62.760	ENSOMEG00000002328	smg7	99	62.843	Oryzias_melastigma
ENSECAG00000004313	SMG7	97	95.739	ENSOGAG00000003107	SMG7	94	95.467	Otolemur_garnettii
ENSECAG00000004313	SMG7	100	97.179	ENSOARG00000001352	SMG7	100	97.179	Ovis_aries
ENSECAG00000004313	SMG7	99	93.966	ENSPPAG00000031619	SMG7	100	94.061	Pan_paniscus
ENSECAG00000004313	SMG7	99	98.546	ENSPPRG00000011222	SMG7	100	98.546	Panthera_pardus
ENSECAG00000004313	SMG7	96	98.467	ENSPTIG00000007242	SMG7	100	94.498	Panthera_tigris_altaica
ENSECAG00000004313	SMG7	97	98.007	ENSPTRG00000001764	SMG7	100	94.061	Pan_troglodytes
ENSECAG00000004313	SMG7	100	98.034	ENSPANG00000004520	SMG7	100	98.034	Papio_anubis
ENSECAG00000004313	SMG7	97	87.915	ENSPKIG00000007242	smg7	95	88.415	Paramormyrops_kingsleyae
ENSECAG00000004313	SMG7	97	96.707	ENSPSIG00000012201	SMG7	96	97.806	Pelodiscus_sinensis
ENSECAG00000004313	SMG7	57	56.500	ENSPMGG00000021833	smg7	89	57.000	Periophthalmus_magnuspinnatus
ENSECAG00000004313	SMG7	100	95.530	ENSPEMG00000011315	Smg7	100	95.530	Peromyscus_maniculatus_bairdii
ENSECAG00000004313	SMG7	97	97.583	ENSPCIG00000003786	SMG7	96	97.872	Phascolarctos_cinereus
ENSECAG00000004313	SMG7	97	85.757	ENSPFOG00000019219	smg7	93	85.970	Poecilia_formosa
ENSECAG00000004313	SMG7	97	85.757	ENSPLAG00000001446	smg7	93	85.970	Poecilia_latipinna
ENSECAG00000004313	SMG7	94	85.757	ENSPMEG00000005218	smg7	92	85.970	Poecilia_mexicana
ENSECAG00000004313	SMG7	87	60.436	ENSPREG00000019039	smg7	92	60.208	Poecilia_reticulata
ENSECAG00000004313	SMG7	97	94.066	ENSPPYG00000000427	SMG7	99	94.066	Pongo_abelii
ENSECAG00000004313	SMG7	90	91.223	ENSPCAG00000008360	SMG7	94	85.793	Procavia_capensis
ENSECAG00000004313	SMG7	100	97.949	ENSPCOG00000011996	SMG7	100	97.949	Propithecus_coquereli
ENSECAG00000004313	SMG7	92	92.352	ENSPVAG00000000851	SMG7	89	92.692	Pteropus_vampyrus
ENSECAG00000004313	SMG7	97	88.131	ENSPNYG00000007643	smg7	94	88.358	Pundamilia_nyererei
ENSECAG00000004313	SMG7	99	67.306	ENSPNAG00000011374	smg7	94	90.448	Pygocentrus_nattereri
ENSECAG00000004313	SMG7	99	97.802	ENSRNOG00000027962	Smg7	100	96.561	Rattus_norvegicus
ENSECAG00000004313	SMG7	100	97.949	ENSRBIG00000036316	SMG7	100	97.949	Rhinopithecus_bieti
ENSECAG00000004313	SMG7	100	97.984	ENSRROG00000035719	SMG7	100	97.984	Rhinopithecus_roxellana
ENSECAG00000004313	SMG7	100	97.897	ENSSBOG00000023454	SMG7	100	97.897	Saimiri_boliviensis_boliviensis
ENSECAG00000004313	SMG7	97	98.187	ENSSHAG00000013147	SMG7	96	98.187	Sarcophilus_harrisii
ENSECAG00000004313	SMG7	97	83.424	ENSSFOG00015017252	smg7	98	83.424	Scleropages_formosus
ENSECAG00000004313	SMG7	97	87.574	ENSSMAG00000006067	smg7	93	89.037	Scophthalmus_maximus
ENSECAG00000004313	SMG7	92	89.697	ENSSDUG00000017543	smg7	93	89.939	Seriola_dumerili
ENSECAG00000004313	SMG7	97	95.266	ENSSPUG00000002064	SMG7	96	95.536	Sphenodon_punctatus
ENSECAG00000004313	SMG7	95	89.557	ENSSPAG00000008733	smg7	91	89.809	Stegastes_partitus
ENSECAG00000004313	SMG7	100	98.422	ENSSSCG00000015558	SMG7	100	98.422	Sus_scrofa
ENSECAG00000004313	SMG7	97	98.485	ENSTGUG00000003928	SMG7	93	98.780	Taeniopygia_guttata
ENSECAG00000004313	SMG7	97	81.609	ENSTNIG00000002802	smg7	94	82.081	Tetraodon_nigroviridis
ENSECAG00000004313	SMG7	77	96.186	ENSTBEG00000003220	SMG7	75	96.186	Tupaia_belangeri
ENSECAG00000004313	SMG7	96	98.174	ENSTTRG00000014778	SMG7	94	98.174	Tursiops_truncatus
ENSECAG00000004313	SMG7	99	93.802	ENSUAMG00000017473	SMG7	100	98.379	Ursus_americanus
ENSECAG00000004313	SMG7	99	98.335	ENSUMAG00000016389	SMG7	100	98.379	Ursus_maritimus
ENSECAG00000004313	SMG7	100	98.335	ENSVVUG00000008976	SMG7	100	98.335	Vulpes_vulpes
ENSECAG00000004313	SMG7	97	69.520	ENSXETG00000012528	smg7	99	69.345	Xenopus_tropicalis
ENSECAG00000004313	SMG7	99	61.314	ENSXMAG00000007123	smg7	99	63.339	Xiphophorus_maculatus