EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000006519 (Gene tree)
Gene ID: 100060172
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 212192 bases
Position: chr11:45971630-46183821
Accession: 23339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000004930	EST1	PF10374.9	5.1e-15	1	1
ENSECAP00000035356	EST1	PF10374.9	5.2e-15	1	1
ENSECAP00000004930	EST1_DNA_bind	PF10373.9	6.1e-60	1	1
ENSECAP00000035356	EST1_DNA_bind	PF10373.9	6.1e-60	1	1
ENSECAP00000004930	PIN_4	PF13638.6	1.6e-20	1	1
ENSECAP00000035356	PIN_4	PF13638.6	1.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000033853	-	5425	-	ENSECAP00000035356	1423 (aa)	-	-
ENSECAT00000006856	-	4820	-	ENSECAP00000004930	1422 (aa)	-	F6VUE8

Gene Model

Click here to download ENSECAG00000006519's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000006519's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000006519	SMG6	99	93.084	ENSG00000070366	SMG6	100	97.561	Homo_sapiens
ENSECAG00000006519	SMG6	83	54.874	ENSAPOG00000019448	smg6	74	55.564	Acanthochromis_polyacanthus
ENSECAG00000006519	SMG6	99	95.615	ENSAMEG00000007632	SMG6	99	95.615	Ailuropoda_melanoleuca
ENSECAG00000006519	SMG6	71	60.129	ENSACIG00000012997	smg6	78	55.316	Amphilophus_citrinellus
ENSECAG00000006519	SMG6	86	53.253	ENSAOCG00000002630	smg6	74	54.907	Amphiprion_ocellaris
ENSECAG00000006519	SMG6	86	53.480	ENSAPEG00000019101	smg6	74	54.977	Amphiprion_percula
ENSECAG00000006519	SMG6	83	56.044	ENSATEG00000006483	smg6	73	55.736	Anabas_testudineus
ENSECAG00000006519	SMG6	86	57.098	ENSACAG00000011783	SMG6	100	57.400	Anolis_carolinensis
ENSECAG00000006519	SMG6	99	93.507	ENSANAG00000035760	SMG6	99	93.507	Aotus_nancymaae
ENSECAG00000006519	SMG6	71	59.464	ENSACLG00000005288	smg6	79	55.564	Astatotilapia_calliptera
ENSECAG00000006519	SMG6	68	63.498	ENSAMXG00000017326	smg6	98	51.406	Astyanax_mexicanus
ENSECAG00000006519	SMG6	99	94.614	ENSBTAG00000000267	SMG6	99	94.614	Bos_taurus
ENSECAG00000006519	SMG6	99	93.084	ENSCJAG00000001820	SMG6	99	93.084	Callithrix_jacchus
ENSECAG00000006519	SMG6	99	95.535	ENSCAFG00000019260	SMG6	99	95.535	Canis_familiaris
ENSECAG00000006519	SMG6	99	95.535	ENSCAFG00020009770	SMG6	99	95.535	Canis_lupus_dingo
ENSECAG00000006519	SMG6	99	94.189	ENSCHIG00000021998	SMG6	99	94.189	Capra_hircus
ENSECAG00000006519	SMG6	99	93.084	ENSTSYG00000003406	SMG6	99	97.250	Carlito_syrichta
ENSECAG00000006519	SMG6	97	77.256	ENSCAPG00000016197	SMG6	99	82.588	Cavia_aperea
ENSECAG00000006519	SMG6	99	90.832	ENSCPOG00000014878	SMG6	99	90.832	Cavia_porcellus
ENSECAG00000006519	SMG6	99	93.437	ENSCCAG00000035801	SMG6	99	93.437	Cebus_capucinus
ENSECAG00000006519	SMG6	99	93.296	ENSCATG00000031956	SMG6	99	93.296	Cercocebus_atys
ENSECAG00000006519	SMG6	99	92.872	ENSCLAG00000006748	SMG6	99	92.914	Chinchilla_lanigera
ENSECAG00000006519	SMG6	99	93.790	ENSCSAG00000013800	SMG6	99	93.790	Chlorocebus_sabaeus
ENSECAG00000006519	SMG6	51	97.015	ENSCHOG00000005024	-	66	97.015	Choloepus_hoffmanni
ENSECAG00000006519	SMG6	99	72.999	ENSCPBG00000020369	SMG6	99	73.556	Chrysemys_picta_bellii
ENSECAG00000006519	SMG6	97	93.782	ENSCANG00000031764	SMG6	99	97.250	Colobus_angolensis_palliatus
ENSECAG00000006519	SMG6	54	88.447	ENSCGRG00001019595	Smg6	98	88.235	Cricetulus_griseus_chok1gshd
ENSECAG00000006519	SMG6	97	85.611	ENSCGRG00000007782	Smg6	99	85.756	Cricetulus_griseus_crigri
ENSECAG00000006519	SMG6	86	54.314	ENSCSEG00000012757	smg6	81	53.894	Cynoglossus_semilaevis
ENSECAG00000006519	SMG6	71	57.752	ENSCVAG00000012789	smg6	74	54.071	Cyprinodon_variegatus
ENSECAG00000006519	SMG6	99	50.100	ENSDARG00000100481	smg6	99	50.973	Danio_rerio
ENSECAG00000006519	SMG6	99	93.507	ENSDNOG00000048283	SMG6	99	93.507	Dasypus_novemcinctus
ENSECAG00000006519	SMG6	99	89.108	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSECAG00000006519	SMG6	92	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSECAG00000006519	SMG6	73	50.486	ENSEBUG00000005059	smg6	73	48.837	Eptatretus_burgeri
ENSECAG00000006519	SMG6	100	99.719	ENSEASG00005009318	SMG6	100	99.719	Equus_asinus_asinus
ENSECAG00000006519	SMG6	99	83.770	ENSEEUG00000003493	SMG6	99	83.770	Erinaceus_europaeus
ENSECAG00000006519	SMG6	71	60.482	ENSELUG00000005934	smg6	69	55.658	Esox_lucius
ENSECAG00000006519	SMG6	99	96.669	ENSFCAG00000028817	SMG6	99	96.669	Felis_catus
ENSECAG00000006519	SMG6	97	72.857	ENSFALG00000006538	SMG6	99	72.929	Ficedula_albicollis
ENSECAG00000006519	SMG6	99	92.590	ENSFDAG00000015106	SMG6	99	92.590	Fukomys_damarensis
ENSECAG00000006519	SMG6	83	53.137	ENSFHEG00000013282	smg6	75	53.416	Fundulus_heteroclitus
ENSECAG00000006519	SMG6	52	68.224	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
ENSECAG00000006519	SMG6	99	71.864	ENSGALG00000003108	SMG6	98	72.172	Gallus_gallus
ENSECAG00000006519	SMG6	86	52.719	ENSGAFG00000000379	smg6	76	52.839	Gambusia_affinis
ENSECAG00000006519	SMG6	90	53.754	ENSGACG00000020521	smg6	99	53.545	Gasterosteus_aculeatus
ENSECAG00000006519	SMG6	97	72.734	ENSGAGG00000025617	SMG6	99	73.305	Gopherus_agassizii
ENSECAG00000006519	SMG6	99	93.931	ENSGGOG00000017156	SMG6	99	93.931	Gorilla_gorilla
ENSECAG00000006519	SMG6	71	59.502	ENSHBUG00000021311	smg6	74	55.722	Haplochromis_burtoni
ENSECAG00000006519	SMG6	99	92.248	ENSHGLG00000012882	SMG6	99	92.248	Heterocephalus_glaber_female
ENSECAG00000006519	SMG6	99	92.319	ENSHGLG00100017815	SMG6	99	92.319	Heterocephalus_glaber_male
ENSECAG00000006519	SMG6	71	59.178	ENSHCOG00000008761	smg6	97	53.902	Hippocampus_comes
ENSECAG00000006519	SMG6	83	55.698	ENSIPUG00000012493	smg6	75	55.156	Ictalurus_punctatus
ENSECAG00000006519	SMG6	99	94.143	ENSSTOG00000028127	SMG6	99	94.143	Ictidomys_tridecemlineatus
ENSECAG00000006519	SMG6	78	89.375	ENSJJAG00000015367	Smg6	95	87.424	Jaculus_jaculus
ENSECAG00000006519	SMG6	78	55.483	ENSKMAG00000000279	smg6	75	54.073	Kryptolebias_marmoratus
ENSECAG00000006519	SMG6	56	57.609	ENSLACG00000000806	-	99	58.333	Latimeria_chalumnae
ENSECAG00000006519	SMG6	71	66.095	ENSLOCG00000006448	smg6	86	60.467	Lepisosteus_oculatus
ENSECAG00000006519	SMG6	99	93.296	ENSLAFG00000001261	SMG6	99	93.296	Loxodonta_africana
ENSECAG00000006519	SMG6	99	93.860	ENSMFAG00000003394	SMG6	99	93.860	Macaca_fascicularis
ENSECAG00000006519	SMG6	99	93.790	ENSMMUG00000023161	SMG6	99	93.790	Macaca_mulatta
ENSECAG00000006519	SMG6	99	88.811	ENSMNEG00000044592	SMG6	99	88.811	Macaca_nemestrina
ENSECAG00000006519	SMG6	92	97.358	ENSMLEG00000029353	SMG6	99	97.358	Mandrillus_leucophaeus
ENSECAG00000006519	SMG6	84	55.930	ENSMAMG00000020119	smg6	80	55.513	Mastacembelus_armatus
ENSECAG00000006519	SMG6	71	59.464	ENSMZEG00005024736	smg6	74	55.363	Maylandia_zebra
ENSECAG00000006519	SMG6	73	67.075	ENSMGAG00000005401	-	99	67.075	Meleagris_gallopavo
ENSECAG00000006519	SMG6	99	94.989	ENSMICG00000012913	SMG6	99	94.989	Microcebus_murinus
ENSECAG00000006519	SMG6	99	48.204	ENSMMOG00000010883	smg6	99	49.144	Mola_mola
ENSECAG00000006519	SMG6	99	86.088	ENSMODG00000010622	SMG6	99	86.088	Monodelphis_domestica
ENSECAG00000006519	SMG6	99	91.531	MGP_CAROLIEiJ_G0016729	Smg6	99	91.531	Mus_caroli
ENSECAG00000006519	SMG6	99	91.461	ENSMUSG00000038290	Smg6	99	91.461	Mus_musculus
ENSECAG00000006519	SMG6	99	91.172	MGP_PahariEiJ_G0017866	Smg6	99	91.172	Mus_pahari
ENSECAG00000006519	SMG6	99	91.461	MGP_SPRETEiJ_G0017572	Smg6	99	91.461	Mus_spretus
ENSECAG00000006519	SMG6	99	95.606	ENSMPUG00000013046	SMG6	99	95.606	Mustela_putorius_furo
ENSECAG00000006519	SMG6	99	94.826	ENSMLUG00000005739	SMG6	99	94.826	Myotis_lucifugus
ENSECAG00000006519	SMG6	97	91.317	ENSNGAG00000007287	Smg6	99	91.317	Nannospalax_galili
ENSECAG00000006519	SMG6	71	59.424	ENSNBRG00000009511	smg6	80	54.818	Neolamprologus_brichardi
ENSECAG00000006519	SMG6	97	93.593	ENSNLEG00000017171	SMG6	99	97.839	Nomascus_leucogenys
ENSECAG00000006519	SMG6	97	82.468	ENSMEUG00000015804	SMG6	99	82.468	Notamacropus_eugenii
ENSECAG00000006519	SMG6	62	92.760	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSECAG00000006519	SMG6	99	84.448	ENSODEG00000008038	SMG6	99	84.448	Octodon_degus
ENSECAG00000006519	SMG6	99	50.872	ENSONIG00000005594	smg6	99	51.987	Oreochromis_niloticus
ENSECAG00000006519	SMG6	99	93.164	ENSOCUG00000013018	SMG6	99	93.305	Oryctolagus_cuniculus
ENSECAG00000006519	SMG6	83	54.065	ENSORLG00000003317	smg6	74	54.796	Oryzias_latipes
ENSECAG00000006519	SMG6	83	54.157	ENSORLG00020015343	smg6	74	54.495	Oryzias_latipes_hni
ENSECAG00000006519	SMG6	83	54.107	ENSORLG00015020454	smg6	74	54.839	Oryzias_latipes_hsok
ENSECAG00000006519	SMG6	83	54.022	ENSOMEG00000010838	smg6	75	54.495	Oryzias_melastigma
ENSECAG00000006519	SMG6	99	93.724	ENSOGAG00000004483	SMG6	99	93.724	Otolemur_garnettii
ENSECAG00000006519	SMG6	99	92.580	ENSOARG00000015076	SMG6	99	94.058	Ovis_aries
ENSECAG00000006519	SMG6	99	94.001	ENSPPAG00000043296	SMG6	99	94.001	Pan_paniscus
ENSECAG00000006519	SMG6	99	96.740	ENSPPRG00000014581	SMG6	99	96.740	Panthera_pardus
ENSECAG00000006519	SMG6	97	96.741	ENSPTIG00000008925	SMG6	99	99.018	Panthera_tigris_altaica
ENSECAG00000006519	SMG6	99	93.931	ENSPTRG00000008544	SMG6	99	98.035	Pan_troglodytes
ENSECAG00000006519	SMG6	99	93.649	ENSPANG00000024588	SMG6	99	93.649	Papio_anubis
ENSECAG00000006519	SMG6	88	71.833	ENSPSIG00000006660	SMG6	97	71.417	Pelodiscus_sinensis
ENSECAG00000006519	SMG6	97	60.769	ENSPMGG00000000844	smg6	99	60.769	Periophthalmus_magnuspinnatus
ENSECAG00000006519	SMG6	99	92.731	ENSPEMG00000020707	Smg6	99	92.731	Peromyscus_maniculatus_bairdii
ENSECAG00000006519	SMG6	99	51.503	ENSPFOG00000012035	smg6	99	51.509	Poecilia_formosa
ENSECAG00000006519	SMG6	76	56.395	ENSPLAG00000017660	smg6	74	53.888	Poecilia_latipinna
ENSECAG00000006519	SMG6	76	56.421	ENSPMEG00000000258	smg6	74	54.203	Poecilia_mexicana
ENSECAG00000006519	SMG6	83	54.216	ENSPREG00000010066	smg6	74	54.058	Poecilia_reticulata
ENSECAG00000006519	SMG6	99	88.451	ENSPPYG00000007790	SMG6	99	88.451	Pongo_abelii
ENSECAG00000006519	SMG6	99	88.709	ENSPCAG00000000552	SMG6	99	88.709	Procavia_capensis
ENSECAG00000006519	SMG6	99	94.637	ENSPCOG00000020925	SMG6	99	94.637	Propithecus_coquereli
ENSECAG00000006519	SMG6	85	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSECAG00000006519	SMG6	71	61.782	ENSPNYG00000024151	smg6	79	57.423	Pundamilia_nyererei
ENSECAG00000006519	SMG6	87	52.034	ENSPNAG00000015480	smg6	87	63.423	Pygocentrus_nattereri
ENSECAG00000006519	SMG6	99	91.884	ENSRNOG00000003041	Smg6	96	95.308	Rattus_norvegicus
ENSECAG00000006519	SMG6	99	93.437	ENSRBIG00000024746	SMG6	99	93.437	Rhinopithecus_bieti
ENSECAG00000006519	SMG6	99	93.507	ENSRROG00000030423	SMG6	99	96.857	Rhinopithecus_roxellana
ENSECAG00000006519	SMG6	99	93.437	ENSSBOG00000022518	SMG6	99	91.743	Saimiri_boliviensis_boliviensis
ENSECAG00000006519	SMG6	99	85.222	ENSSHAG00000010045	SMG6	99	85.222	Sarcophilus_harrisii
ENSECAG00000006519	SMG6	71	62.535	ENSSFOG00015005436	smg6	70	56.996	Scleropages_formosus
ENSECAG00000006519	SMG6	83	55.807	ENSSMAG00000019777	smg6	73	55.278	Scophthalmus_maximus
ENSECAG00000006519	SMG6	83	55.521	ENSSDUG00000016412	smg6	74	55.521	Seriola_dumerili
ENSECAG00000006519	SMG6	80	54.745	ENSSLDG00000020747	smg6	79	53.458	Seriola_lalandi_dorsalis
ENSECAG00000006519	SMG6	99	70.266	ENSSPUG00000007152	SMG6	99	70.196	Sphenodon_punctatus
ENSECAG00000006519	SMG6	71	58.937	ENSSPAG00000015633	smg6	74	54.510	Stegastes_partitus
ENSECAG00000006519	SMG6	99	95.184	ENSSSCG00000017826	SMG6	99	95.184	Sus_scrofa
ENSECAG00000006519	SMG6	99	72.753	ENSTGUG00000005836	SMG6	99	73.034	Taeniopygia_guttata
ENSECAG00000006519	SMG6	97	50.068	ENSTRUG00000000358	smg6	95	50.273	Takifugu_rubripes
ENSECAG00000006519	SMG6	99	50.166	ENSTNIG00000016164	smg6	99	50.364	Tetraodon_nigroviridis
ENSECAG00000006519	SMG6	99	89.273	ENSTBEG00000011424	SMG6	99	89.273	Tupaia_belangeri
ENSECAG00000006519	SMG6	90	92.401	ENSTTRG00000001175	SMG6	91	92.401	Tursiops_truncatus
ENSECAG00000006519	SMG6	99	95.898	ENSUAMG00000025152	SMG6	99	95.898	Ursus_americanus
ENSECAG00000006519	SMG6	97	96.159	ENSUMAG00000009306	SMG6	99	96.159	Ursus_maritimus
ENSECAG00000006519	SMG6	84	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSECAG00000006519	SMG6	99	95.252	ENSVVUG00000021727	SMG6	99	95.252	Vulpes_vulpes
ENSECAG00000006519	SMG6	97	59.494	ENSXETG00000023799	SMG6	99	59.342	Xenopus_tropicalis
ENSECAG00000006519	SMG6	83	55.217	ENSXCOG00000009867	smg6	74	54.647	Xiphophorus_couchianus
ENSECAG00000006519	SMG6	83	54.560	ENSXMAG00000010321	smg6	74	54.003	Xiphophorus_maculatus