EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000008301 (Gene tree)
Gene ID: 100051335
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 113345 bases
Position: chr16:77869814-77983158
Accession: 25085
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000006629	XRN_N	PF03159.18	1.3e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000008803	-	5365	-	ENSECAP00000006629	1705 (aa)	XP_023476815	F6USM9

Gene Model

Click here to download ENSECAG00000008301's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03008	Ribosome biogenesis in eukaryotes	KEGG
ecb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000008301's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000008301	XRN1	100	92.736	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSECAG00000008301	XRN1	100	61.476	ENSAPOG00000000622	xrn1	93	76.759	Acanthochromis_polyacanthus
ENSECAG00000008301	XRN1	100	91.533	ENSAMEG00000012538	XRN1	100	91.533	Ailuropoda_melanoleuca
ENSECAG00000008301	XRN1	95	72.868	ENSACIG00000001057	xrn1	93	72.986	Amphilophus_citrinellus
ENSECAG00000008301	XRN1	100	61.102	ENSAOCG00000014097	xrn1	95	69.880	Amphiprion_ocellaris
ENSECAG00000008301	XRN1	100	60.551	ENSAPEG00000006620	xrn1	98	62.779	Amphiprion_percula
ENSECAG00000008301	XRN1	94	70.883	ENSATEG00000009752	xrn1	98	70.929	Anabas_testudineus
ENSECAG00000008301	XRN1	99	75.793	ENSAPLG00000004905	XRN1	100	75.331	Anas_platyrhynchos
ENSECAG00000008301	XRN1	100	71.796	ENSACAG00000004985	XRN1	100	71.237	Anolis_carolinensis
ENSECAG00000008301	XRN1	100	92.443	ENSANAG00000029013	XRN1	99	95.146	Aotus_nancymaae
ENSECAG00000008301	XRN1	100	60.226	ENSACLG00000004806	xrn1	95	62.277	Astatotilapia_calliptera
ENSECAG00000008301	XRN1	99	60.344	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSECAG00000008301	XRN1	100	93.087	ENSBTAG00000011524	XRN1	100	92.912	Bos_taurus
ENSECAG00000008301	XRN1	70	38.944	WBGene00012730	xrn-1	80	38.808	Caenorhabditis_elegans
ENSECAG00000008301	XRN1	100	92.150	ENSCJAG00000001872	XRN1	100	92.150	Callithrix_jacchus
ENSECAG00000008301	XRN1	100	93.732	ENSCAFG00000007783	XRN1	100	93.732	Canis_familiaris
ENSECAG00000008301	XRN1	100	91.915	ENSCAFG00020009120	XRN1	99	98.503	Canis_lupus_dingo
ENSECAG00000008301	XRN1	99	89.897	ENSCHIG00000019192	XRN1	99	89.724	Capra_hircus
ENSECAG00000008301	XRN1	100	92.037	ENSTSYG00000002705	XRN1	100	92.037	Carlito_syrichta
ENSECAG00000008301	XRN1	100	92.853	ENSCCAG00000034800	XRN1	99	96.672	Cebus_capucinus
ENSECAG00000008301	XRN1	100	93.146	ENSCATG00000041794	XRN1	100	93.146	Cercocebus_atys
ENSECAG00000008301	XRN1	100	86.239	ENSCLAG00000001451	XRN1	99	95.404	Chinchilla_lanigera
ENSECAG00000008301	XRN1	100	93.146	ENSCSAG00000011265	XRN1	100	93.146	Chlorocebus_sabaeus
ENSECAG00000008301	XRN1	62	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSECAG00000008301	XRN1	70	44.958	ENSCSAVG00000008584	-	98	44.919	Ciona_savignyi
ENSECAG00000008301	XRN1	100	93.087	ENSCANG00000037495	XRN1	99	97.305	Colobus_angolensis_palliatus
ENSECAG00000008301	XRN1	100	86.525	ENSCGRG00001019411	Xrn1	99	95.721	Cricetulus_griseus_chok1gshd
ENSECAG00000008301	XRN1	100	86.525	ENSCGRG00000012464	Xrn1	99	95.721	Cricetulus_griseus_crigri
ENSECAG00000008301	XRN1	100	56.141	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSECAG00000008301	XRN1	66	69.069	ENSCVAG00000013089	xrn1	99	72.222	Cyprinodon_variegatus
ENSECAG00000008301	XRN1	99	62.914	ENSDARG00000091652	xrn1	98	80.169	Danio_rerio
ENSECAG00000008301	XRN1	100	85.920	ENSDORG00000013833	Xrn1	100	85.862	Dipodomys_ordii
ENSECAG00000008301	XRN1	74	40.249	FBgn0020261	pcm	76	40.000	Drosophila_melanogaster
ENSECAG00000008301	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSECAG00000008301	XRN1	100	99.765	ENSEASG00005002687	XRN1	100	99.765	Equus_asinus_asinus
ENSECAG00000008301	XRN1	92	82.405	ENSEEUG00000011323	XRN1	92	82.405	Erinaceus_europaeus
ENSECAG00000008301	XRN1	100	61.517	ENSELUG00000000169	xrn1	100	61.460	Esox_lucius
ENSECAG00000008301	XRN1	100	89.813	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSECAG00000008301	XRN1	100	74.526	ENSFALG00000007021	XRN1	100	74.136	Ficedula_albicollis
ENSECAG00000008301	XRN1	100	87.514	ENSFDAG00000020494	XRN1	99	94.929	Fukomys_damarensis
ENSECAG00000008301	XRN1	84	68.395	ENSGMOG00000006396	xrn1	80	68.033	Gadus_morhua
ENSECAG00000008301	XRN1	100	74.804	ENSGALG00000002706	XRN1	100	74.358	Gallus_gallus
ENSECAG00000008301	XRN1	100	59.898	ENSGACG00000014328	xrn1	96	61.425	Gasterosteus_aculeatus
ENSECAG00000008301	XRN1	95	77.273	ENSGAGG00000017535	XRN1	99	76.974	Gopherus_agassizii
ENSECAG00000008301	XRN1	100	92.912	ENSGGOG00000008047	XRN1	100	92.912	Gorilla_gorilla
ENSECAG00000008301	XRN1	100	60.149	ENSHBUG00000005908	xrn1	98	73.566	Haplochromis_burtoni
ENSECAG00000008301	XRN1	100	88.666	ENSHGLG00000014476	XRN1	99	95.808	Heterocephalus_glaber_female
ENSECAG00000008301	XRN1	100	88.666	ENSHGLG00100015130	XRN1	99	95.808	Heterocephalus_glaber_male
ENSECAG00000008301	XRN1	96	71.360	ENSHCOG00000014062	xrn1	97	70.095	Hippocampus_comes
ENSECAG00000008301	XRN1	99	62.134	ENSIPUG00000015229	xrn1	96	63.691	Ictalurus_punctatus
ENSECAG00000008301	XRN1	100	90.086	ENSSTOG00000013552	XRN1	99	97.305	Ictidomys_tridecemlineatus
ENSECAG00000008301	XRN1	98	85.357	ENSJJAG00000010863	Xrn1	99	94.032	Jaculus_jaculus
ENSECAG00000008301	XRN1	100	59.896	ENSKMAG00000021356	xrn1	94	76.160	Kryptolebias_marmoratus
ENSECAG00000008301	XRN1	100	60.694	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSECAG00000008301	XRN1	100	69.422	ENSLACG00000009020	XRN1	97	70.423	Latimeria_chalumnae
ENSECAG00000008301	XRN1	100	65.541	ENSLOCG00000007944	xrn1	98	65.539	Lepisosteus_oculatus
ENSECAG00000008301	XRN1	63	95.603	ENSLAFG00000015426	XRN1	100	95.603	Loxodonta_africana
ENSECAG00000008301	XRN1	100	93.263	ENSMFAG00000032599	XRN1	100	93.263	Macaca_fascicularis
ENSECAG00000008301	XRN1	100	93.204	ENSMMUG00000014038	XRN1	100	93.204	Macaca_mulatta
ENSECAG00000008301	XRN1	100	93.029	ENSMNEG00000034217	XRN1	100	93.029	Macaca_nemestrina
ENSECAG00000008301	XRN1	94	70.607	ENSMAMG00000013219	xrn1	94	76.844	Mastacembelus_armatus
ENSECAG00000008301	XRN1	100	60.113	ENSMZEG00005015099	xrn1	95	62.157	Maylandia_zebra
ENSECAG00000008301	XRN1	99	74.495	ENSMGAG00000006333	XRN1	100	74.033	Meleagris_gallopavo
ENSECAG00000008301	XRN1	100	92.694	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSECAG00000008301	XRN1	57	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSECAG00000008301	XRN1	100	82.205	ENSMODG00000021236	XRN1	100	81.914	Monodelphis_domestica
ENSECAG00000008301	XRN1	100	57.630	ENSMALG00000004098	xrn1	96	58.449	Monopterus_albus
ENSECAG00000008301	XRN1	96	94.629	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSECAG00000008301	XRN1	100	85.083	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSECAG00000008301	XRN1	100	85.313	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSECAG00000008301	XRN1	100	85.083	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSECAG00000008301	XRN1	100	94.200	ENSMPUG00000012040	XRN1	100	94.200	Mustela_putorius_furo
ENSECAG00000008301	XRN1	100	88.768	ENSMLUG00000016885	XRN1	100	88.653	Myotis_lucifugus
ENSECAG00000008301	XRN1	57	94.311	ENSNGAG00000023964	Xrn1	99	94.311	Nannospalax_galili
ENSECAG00000008301	XRN1	100	93.146	ENSNLEG00000004726	XRN1	100	93.146	Nomascus_leucogenys
ENSECAG00000008301	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSECAG00000008301	XRN1	79	83.840	ENSOPRG00000007337	-	78	83.840	Ochotona_princeps
ENSECAG00000008301	XRN1	100	61.460	ENSONIG00000016673	xrn1	99	64.854	Oreochromis_niloticus
ENSECAG00000008301	XRN1	92	77.560	ENSOANG00000006735	XRN1	100	77.434	Ornithorhynchus_anatinus
ENSECAG00000008301	XRN1	100	89.112	ENSOCUG00000001861	XRN1	100	88.940	Oryctolagus_cuniculus
ENSECAG00000008301	XRN1	100	60.967	ENSORLG00000013005	xrn1	95	62.232	Oryzias_latipes
ENSECAG00000008301	XRN1	100	60.985	ENSORLG00020005559	xrn1	95	62.737	Oryzias_latipes_hni
ENSECAG00000008301	XRN1	100	60.894	ENSORLG00015022523	xrn1	95	62.367	Oryzias_latipes_hsok
ENSECAG00000008301	XRN1	95	72.942	ENSOMEG00000015397	xrn1	100	72.861	Oryzias_melastigma
ENSECAG00000008301	XRN1	100	89.520	ENSOGAG00000000170	XRN1	100	89.520	Otolemur_garnettii
ENSECAG00000008301	XRN1	99	93.255	ENSOARG00000006343	XRN1	99	93.079	Ovis_aries
ENSECAG00000008301	XRN1	100	92.970	ENSPPAG00000010180	XRN1	100	92.970	Pan_paniscus
ENSECAG00000008301	XRN1	100	93.443	ENSPPRG00000007125	XRN1	100	93.443	Panthera_pardus
ENSECAG00000008301	XRN1	100	93.384	ENSPTIG00000021081	XRN1	100	93.384	Panthera_tigris_altaica
ENSECAG00000008301	XRN1	100	93.029	ENSPTRG00000015482	XRN1	100	93.029	Pan_troglodytes
ENSECAG00000008301	XRN1	100	93.146	ENSPANG00000010638	XRN1	100	93.146	Papio_anubis
ENSECAG00000008301	XRN1	100	75.964	ENSPSIG00000018050	XRN1	100	75.680	Pelodiscus_sinensis
ENSECAG00000008301	XRN1	57	77.551	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSECAG00000008301	XRN1	57	95.880	ENSPEMG00000020610	Xrn1	99	95.880	Peromyscus_maniculatus_bairdii
ENSECAG00000008301	XRN1	65	50.337	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSECAG00000008301	XRN1	100	81.924	ENSPCIG00000028735	XRN1	99	89.753	Phascolarctos_cinereus
ENSECAG00000008301	XRN1	90	64.751	ENSPFOG00000013932	xrn1	99	64.642	Poecilia_formosa
ENSECAG00000008301	XRN1	90	64.231	ENSPLAG00000021653	xrn1	99	64.377	Poecilia_latipinna
ENSECAG00000008301	XRN1	88	64.332	ENSPMEG00000003076	xrn1	95	64.504	Poecilia_mexicana
ENSECAG00000008301	XRN1	100	61.460	ENSPREG00000021147	xrn1	100	61.303	Poecilia_reticulata
ENSECAG00000008301	XRN1	100	92.912	ENSPPYG00000014172	XRN1	100	92.912	Pongo_abelii
ENSECAG00000008301	XRN1	90	81.347	ENSPCAG00000005638	XRN1	100	81.347	Procavia_capensis
ENSECAG00000008301	XRN1	100	92.857	ENSPCOG00000013089	XRN1	99	97.605	Propithecus_coquereli
ENSECAG00000008301	XRN1	96	92.374	ENSPVAG00000016265	XRN1	96	92.374	Pteropus_vampyrus
ENSECAG00000008301	XRN1	100	60.528	ENSPNYG00000010570	xrn1	95	62.523	Pundamilia_nyererei
ENSECAG00000008301	XRN1	99	60.802	ENSPNAG00000023531	xrn1	97	61.625	Pygocentrus_nattereri
ENSECAG00000008301	XRN1	100	86.239	ENSRNOG00000042951	Xrn1	100	86.124	Rattus_norvegicus
ENSECAG00000008301	XRN1	100	92.443	ENSRBIG00000041227	XRN1	100	92.443	Rhinopithecus_bieti
ENSECAG00000008301	XRN1	67	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSECAG00000008301	XRN1	100	92.326	ENSSBOG00000029561	XRN1	100	92.326	Saimiri_boliviensis_boliviensis
ENSECAG00000008301	XRN1	99	81.775	ENSSHAG00000016207	XRN1	100	81.420	Sarcophilus_harrisii
ENSECAG00000008301	XRN1	100	61.512	ENSSFOG00015024211	xrn1	97	62.418	Scleropages_formosus
ENSECAG00000008301	XRN1	93	72.316	ENSSMAG00000016534	xrn1	94	72.316	Scophthalmus_maximus
ENSECAG00000008301	XRN1	90	72.661	ENSSDUG00000010306	xrn1	91	72.661	Seriola_dumerili
ENSECAG00000008301	XRN1	94	72.134	ENSSLDG00000021543	xrn1	96	72.134	Seriola_lalandi_dorsalis
ENSECAG00000008301	XRN1	67	85.227	ENSSARG00000007741	-	83	85.227	Sorex_araneus
ENSECAG00000008301	XRN1	100	77.539	ENSTGUG00000008498	XRN1	100	77.307	Taeniopygia_guttata
ENSECAG00000008301	XRN1	100	58.637	ENSTRUG00000004895	xrn1	96	78.038	Takifugu_rubripes
ENSECAG00000008301	XRN1	96	68.820	ENSTNIG00000017615	xrn1	96	59.808	Tetraodon_nigroviridis
ENSECAG00000008301	XRN1	85	97.305	ENSTBEG00000003256	XRN1	89	86.762	Tupaia_belangeri
ENSECAG00000008301	XRN1	100	89.397	ENSTTRG00000012914	XRN1	100	89.162	Tursiops_truncatus
ENSECAG00000008301	XRN1	100	93.267	ENSUAMG00000001608	XRN1	99	98.503	Ursus_americanus
ENSECAG00000008301	XRN1	100	95.199	ENSUMAG00000013625	XRN1	100	95.199	Ursus_maritimus
ENSECAG00000008301	XRN1	100	90.510	ENSVPAG00000004690	XRN1	100	90.510	Vicugna_pacos
ENSECAG00000008301	XRN1	100	94.845	ENSVVUG00000024461	XRN1	99	98.503	Vulpes_vulpes
ENSECAG00000008301	XRN1	100	69.217	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSECAG00000008301	XRN1	100	61.191	ENSXCOG00000007917	xrn1	95	62.719	Xiphophorus_couchianus
ENSECAG00000008301	XRN1	92	71.801	ENSXMAG00000018320	xrn1	92	71.883	Xiphophorus_maculatus