EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000010141 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 11563 bases
Position: chr21:3609096-3620658
Accession: 19820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000008028	LSM	PF01423.22	4.2e-16	1	1
ENSECAP00000030882	LSM	PF01423.22	5.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000058389	-	1166	-	ENSECAP00000030882	256 (aa)	-	-
ENSECAT00000010409	-	1350	XM_001500601	ENSECAP00000008028	245 (aa)	XP_001500651	F6RM65

Gene Model

Click here to download ENSECAG00000010141's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000010141's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000010141	LSM4	57	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSECAG00000010141	LSM4	56	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSECAG00000010141	LSM4	56	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSECAG00000010141	LSM4	57	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSECAG00000010141	LSM4	56	81.159	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSECAG00000010141	LSM4	57	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSECAG00000010141	LSM4	57	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSECAG00000010141	LSM4	62	97.386	ENSCAFG00000014900	LSM4	100	97.386	Canis_familiaris
ENSECAG00000010141	LSM4	57	100.000	ENSCAFG00020012137	LSM4	100	100.000	Canis_lupus_dingo
ENSECAG00000010141	LSM4	56	100.000	ENSCHIG00000010928	LSM4	91	100.000	Capra_hircus
ENSECAG00000010141	LSM4	57	99.281	ENSTSYG00000030906	LSM4	100	99.281	Carlito_syrichta
ENSECAG00000010141	LSM4	57	97.842	ENSCAPG00000014140	LSM4	100	97.842	Cavia_aperea
ENSECAG00000010141	LSM4	57	97.842	ENSCPOG00000024117	LSM4	100	97.842	Cavia_porcellus
ENSECAG00000010141	LSM4	57	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSECAG00000010141	LSM4	57	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSECAG00000010141	LSM4	57	96.403	ENSCLAG00000010828	LSM4	100	96.403	Chinchilla_lanigera
ENSECAG00000010141	LSM4	57	100.000	ENSCSAG00000005370	LSM4	100	100.000	Chlorocebus_sabaeus
ENSECAG00000010141	LSM4	57	82.014	ENSCPBG00000012925	LSM4	100	79.856	Chrysemys_picta_bellii
ENSECAG00000010141	LSM4	57	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSECAG00000010141	LSM4	57	95.683	ENSCGRG00001014436	Lsm4	100	95.683	Cricetulus_griseus_chok1gshd
ENSECAG00000010141	LSM4	56	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSECAG00000010141	LSM4	56	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSECAG00000010141	LSM4	50	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSECAG00000010141	LSM4	55	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSECAG00000010141	LSM4	57	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSECAG00000010141	LSM4	51	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSECAG00000010141	LSM4	54	82.090	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSECAG00000010141	LSM4	57	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSECAG00000010141	LSM4	56	81.159	ENSFALG00000009478	LSM4	99	78.986	Ficedula_albicollis
ENSECAG00000010141	LSM4	56	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSECAG00000010141	LSM4	57	81.295	ENSGALG00000003385	LSM4	100	79.137	Gallus_gallus
ENSECAG00000010141	LSM4	51	76.812	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSECAG00000010141	LSM4	57	82.014	ENSGAGG00000017812	LSM4	100	79.856	Gopherus_agassizii
ENSECAG00000010141	LSM4	57	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSECAG00000010141	LSM4	57	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSECAG00000010141	LSM4	56	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSECAG00000010141	LSM4	56	81.159	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSECAG00000010141	LSM4	57	100.000	ENSSTOG00000016494	LSM4	100	100.000	Ictidomys_tridecemlineatus
ENSECAG00000010141	LSM4	57	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSECAG00000010141	LSM4	56	83.212	ENSLACG00000015861	LSM4	100	82.857	Latimeria_chalumnae
ENSECAG00000010141	LSM4	53	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSECAG00000010141	LSM4	56	98.551	ENSLAFG00000017459	LSM4	99	98.551	Loxodonta_africana
ENSECAG00000010141	LSM4	57	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSECAG00000010141	LSM4	57	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSECAG00000010141	LSM4	57	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSECAG00000010141	LSM4	57	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSECAG00000010141	LSM4	56	79.710	ENSMAMG00000006190	lsm4	62	98.864	Mastacembelus_armatus
ENSECAG00000010141	LSM4	56	82.734	ENSMGAG00000004976	LSM4	99	89.855	Meleagris_gallopavo
ENSECAG00000010141	LSM4	57	99.281	ENSMICG00000000222	LSM4	100	99.281	Microcebus_murinus
ENSECAG00000010141	LSM4	57	96.403	ENSMOCG00000020861	Lsm4	100	96.403	Microtus_ochrogaster
ENSECAG00000010141	LSM4	51	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSECAG00000010141	LSM4	56	76.429	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSECAG00000010141	LSM4	57	96.403	MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	Mus_caroli
ENSECAG00000010141	LSM4	57	96.403	ENSMUSG00000031848	Lsm4	100	96.403	Mus_musculus
ENSECAG00000010141	LSM4	57	96.403	MGP_PahariEiJ_G0021623	Lsm4	100	96.403	Mus_pahari
ENSECAG00000010141	LSM4	57	96.403	MGP_SPRETEiJ_G0032276	Lsm4	100	96.403	Mus_spretus
ENSECAG00000010141	LSM4	57	100.000	ENSMPUG00000015589	LSM4	100	100.000	Mustela_putorius_furo
ENSECAG00000010141	LSM4	56	100.000	ENSMLUG00000004010	LSM4	99	100.000	Myotis_lucifugus
ENSECAG00000010141	LSM4	57	96.403	ENSNGAG00000008644	Lsm4	100	96.403	Nannospalax_galili
ENSECAG00000010141	LSM4	51	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSECAG00000010141	LSM4	51	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSECAG00000010141	LSM4	57	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSECAG00000010141	LSM4	57	87.050	ENSODEG00000004519	-	100	74.820	Octodon_degus
ENSECAG00000010141	LSM4	57	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSECAG00000010141	LSM4	56	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSECAG00000010141	LSM4	56	72.848	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSECAG00000010141	LSM4	56	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSECAG00000010141	LSM4	57	83.453	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSECAG00000010141	LSM4	57	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSECAG00000010141	LSM4	57	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSECAG00000010141	LSM4	56	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSECAG00000010141	LSM4	57	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSECAG00000010141	LSM4	57	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSECAG00000010141	LSM4	56	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSECAG00000010141	LSM4	56	81.159	ENSPSIG00000012358	LSM4	100	78.986	Pelodiscus_sinensis
ENSECAG00000010141	LSM4	57	96.403	ENSPEMG00000001358	Lsm4	100	96.403	Peromyscus_maniculatus_bairdii
ENSECAG00000010141	LSM4	56	80.000	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSECAG00000010141	LSM4	56	78.417	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSECAG00000010141	LSM4	57	100.000	ENSPPYG00000009736	LSM4	100	100.000	Pongo_abelii
ENSECAG00000010141	LSM4	51	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSECAG00000010141	LSM4	57	99.281	ENSPCOG00000019837	LSM4	100	99.281	Propithecus_coquereli
ENSECAG00000010141	LSM4	57	100.000	ENSPVAG00000015383	LSM4	100	100.000	Pteropus_vampyrus
ENSECAG00000010141	LSM4	54	82.090	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSECAG00000010141	LSM4	57	96.403	ENSRNOG00000019572	Lsm4	100	96.403	Rattus_norvegicus
ENSECAG00000010141	LSM4	57	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSECAG00000010141	LSM4	57	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSECAG00000010141	LSM4	51	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSECAG00000010141	LSM4	57	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSECAG00000010141	LSM4	56	80.576	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSECAG00000010141	LSM4	56	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSECAG00000010141	LSM4	57	100.000	ENSSSCG00000034314	LSM4	100	100.000	Sus_scrofa
ENSECAG00000010141	LSM4	56	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSECAG00000010141	LSM4	56	100.000	ENSUAMG00000000665	LSM4	99	100.000	Ursus_americanus
ENSECAG00000010141	LSM4	57	100.000	ENSUMAG00000009013	LSM4	100	100.000	Ursus_maritimus
ENSECAG00000010141	LSM4	56	100.000	ENSVVUG00000008136	LSM4	71	100.000	Vulpes_vulpes
ENSECAG00000010141	LSM4	57	92.086	ENSXETG00000024933	lsm4	100	77.698	Xenopus_tropicalis