EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000010639 (Gene tree)
Gene ID: 100071059
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 30924 bases
Position: chr21:4025838-4056761
Accession: 24804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000008885	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSECAP00000008885	ResIII	PF04851.15	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000011373	-	3354	-	ENSECAP00000008885	1116 (aa)	XP_023481293	F7D007

Gene Model

Click here to download ENSECAG00000010639's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03013	RNA transport	KEGG
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000010639's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000010639	UPF1	100	99.196	ENSG00000005007	UPF1	100	99.196	Homo_sapiens
ENSECAG00000010639	UPF1	100	92.844	ENSAPOG00000010916	-	100	92.844	Acanthochromis_polyacanthus
ENSECAG00000010639	UPF1	100	91.615	ENSAPOG00000023773	upf1	100	91.704	Acanthochromis_polyacanthus
ENSECAG00000010639	UPF1	100	97.522	ENSAMEG00000011474	UPF1	100	97.522	Ailuropoda_melanoleuca
ENSECAG00000010639	UPF1	100	91.444	ENSACIG00000019949	upf1	100	91.793	Amphilophus_citrinellus
ENSECAG00000010639	UPF1	92	94.927	ENSACIG00000010985	-	100	95.024	Amphilophus_citrinellus
ENSECAG00000010639	UPF1	100	91.129	ENSAOCG00000018519	upf1	100	91.696	Amphiprion_ocellaris
ENSECAG00000010639	UPF1	100	92.844	ENSAOCG00000006352	-	100	92.844	Amphiprion_ocellaris
ENSECAG00000010639	UPF1	100	91.129	ENSAPEG00000016344	upf1	100	91.696	Amphiprion_percula
ENSECAG00000010639	UPF1	100	92.844	ENSAPEG00000006292	-	100	92.844	Amphiprion_percula
ENSECAG00000010639	UPF1	100	92.934	ENSATEG00000016606	-	100	92.934	Anabas_testudineus
ENSECAG00000010639	UPF1	100	90.300	ENSATEG00000017867	upf1	100	91.093	Anabas_testudineus
ENSECAG00000010639	UPF1	93	97.913	ENSAPLG00000009175	UPF1	100	97.913	Anas_platyrhynchos
ENSECAG00000010639	UPF1	95	95.911	ENSANAG00000024107	UPF1	97	95.911	Aotus_nancymaae
ENSECAG00000010639	UPF1	100	91.176	ENSACLG00000007181	upf1	100	91.525	Astatotilapia_calliptera
ENSECAG00000010639	UPF1	100	92.576	ENSACLG00000022630	-	100	92.487	Astatotilapia_calliptera
ENSECAG00000010639	UPF1	100	93.298	ENSAMXG00000042187	upf1	100	93.744	Astyanax_mexicanus
ENSECAG00000010639	UPF1	100	98.669	ENSBTAG00000020922	UPF1	100	98.669	Bos_taurus
ENSECAG00000010639	UPF1	89	50.940	WBGene00004880	smg-2	99	48.205	Caenorhabditis_elegans
ENSECAG00000010639	UPF1	100	98.230	ENSCJAG00000019627	UPF1	100	98.230	Callithrix_jacchus
ENSECAG00000010639	UPF1	100	98.584	ENSCAFG00000014578	UPF1	100	98.584	Canis_familiaris
ENSECAG00000010639	UPF1	100	99.553	ENSCAFG00020012347	UPF1	100	99.553	Canis_lupus_dingo
ENSECAG00000010639	UPF1	100	99.642	ENSCHIG00000011018	UPF1	100	99.642	Capra_hircus
ENSECAG00000010639	UPF1	96	96.759	ENSTSYG00000008877	UPF1	99	96.759	Carlito_syrichta
ENSECAG00000010639	UPF1	93	98.097	ENSCAPG00000005758	UPF1	95	98.097	Cavia_aperea
ENSECAG00000010639	UPF1	100	96.106	ENSCPOG00000025463	UPF1	100	96.106	Cavia_porcellus
ENSECAG00000010639	UPF1	100	99.196	ENSCCAG00000032175	UPF1	100	99.196	Cebus_capucinus
ENSECAG00000010639	UPF1	93	98.479	ENSCATG00000040306	UPF1	98	98.479	Cercocebus_atys
ENSECAG00000010639	UPF1	96	97.225	ENSCLAG00000004037	UPF1	99	98.668	Chinchilla_lanigera
ENSECAG00000010639	UPF1	100	99.106	ENSCSAG00000005276	UPF1	100	99.106	Chlorocebus_sabaeus
ENSECAG00000010639	UPF1	100	97.140	ENSCPBG00000012513	UPF1	100	97.140	Chrysemys_picta_bellii
ENSECAG00000010639	UPF1	78	78.416	ENSCING00000021399	-	99	78.416	Ciona_intestinalis
ENSECAG00000010639	UPF1	99	72.099	ENSCSAVG00000006533	-	99	72.099	Ciona_savignyi
ENSECAG00000010639	UPF1	96	96.942	ENSCANG00000029819	UPF1	99	96.942	Colobus_angolensis_palliatus
ENSECAG00000010639	UPF1	100	98.835	ENSCGRG00001021067	Upf1	100	98.835	Cricetulus_griseus_chok1gshd
ENSECAG00000010639	UPF1	95	97.285	ENSCGRG00000013480	Upf1	99	97.285	Cricetulus_griseus_crigri
ENSECAG00000010639	UPF1	100	92.838	ENSCSEG00000016159	-	100	92.748	Cynoglossus_semilaevis
ENSECAG00000010639	UPF1	100	86.583	ENSCSEG00000017239	upf1	100	86.673	Cynoglossus_semilaevis
ENSECAG00000010639	UPF1	100	92.487	ENSCVAG00000010561	upf1	100	92.397	Cyprinodon_variegatus
ENSECAG00000010639	UPF1	100	93.119	ENSDARG00000016302	upf1	100	93.566	Danio_rerio
ENSECAG00000010639	UPF1	96	93.883	ENSDORG00000009984	Upf1	95	95.627	Dipodomys_ordii
ENSECAG00000010639	UPF1	85	71.088	FBgn0030354	Upf1	84	67.562	Drosophila_melanogaster
ENSECAG00000010639	UPF1	55	85.366	ENSEBUG00000010069	upf1	96	85.691	Eptatretus_burgeri
ENSECAG00000010639	UPF1	100	100.000	ENSEASG00005006549	UPF1	100	100.000	Equus_asinus_asinus
ENSECAG00000010639	UPF1	100	90.658	ENSELUG00000020917	upf1	100	90.925	Esox_lucius
ENSECAG00000010639	UPF1	100	91.911	ENSELUG00000012916	-	100	91.829	Esox_lucius
ENSECAG00000010639	UPF1	100	98.496	ENSFCAG00000009757	UPF1	100	98.496	Felis_catus
ENSECAG00000010639	UPF1	96	96.840	ENSFALG00000009312	UPF1	99	96.840	Ficedula_albicollis
ENSECAG00000010639	UPF1	97	96.232	ENSFDAG00000014816	UPF1	99	98.573	Fukomys_damarensis
ENSECAG00000010639	UPF1	100	88.642	ENSFHEG00000006428	upf1	100	88.642	Fundulus_heteroclitus
ENSECAG00000010639	UPF1	85	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSECAG00000010639	UPF1	100	91.408	ENSGMOG00000007541	upf1	100	91.851	Gadus_morhua
ENSECAG00000010639	UPF1	100	97.587	ENSGALG00000003220	UPF1	100	97.587	Gallus_gallus
ENSECAG00000010639	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSECAG00000010639	UPF1	100	92.390	ENSGAFG00000004831	upf1	100	92.301	Gambusia_affinis
ENSECAG00000010639	UPF1	100	97.583	ENSGAGG00000022217	UPF1	100	97.583	Gopherus_agassizii
ENSECAG00000010639	UPF1	93	99.712	ENSGGOG00000002608	UPF1	99	99.712	Gorilla_gorilla
ENSECAG00000010639	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSECAG00000010639	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSECAG00000010639	UPF1	100	97.788	ENSHGLG00000010900	UPF1	100	97.788	Heterocephalus_glaber_female
ENSECAG00000010639	UPF1	95	94.649	ENSHGLG00100005904	UPF1	99	94.649	Heterocephalus_glaber_male
ENSECAG00000010639	UPF1	100	91.943	ENSHCOG00000008918	upf1	100	94.004	Hippocampus_comes
ENSECAG00000010639	UPF1	100	93.744	ENSIPUG00000005108	UPF1	100	94.102	Ictalurus_punctatus
ENSECAG00000010639	UPF1	100	99.017	ENSSTOG00000009196	UPF1	100	99.017	Ictidomys_tridecemlineatus
ENSECAG00000010639	UPF1	100	97.427	ENSJJAG00000023151	Upf1	100	97.427	Jaculus_jaculus
ENSECAG00000010639	UPF1	100	92.844	ENSKMAG00000004962	upf1	100	92.755	Kryptolebias_marmoratus
ENSECAG00000010639	UPF1	100	89.664	ENSLBEG00000014862	upf1	100	90.813	Labrus_bergylta
ENSECAG00000010639	UPF1	100	92.583	ENSLBEG00000027848	-	100	92.583	Labrus_bergylta
ENSECAG00000010639	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSECAG00000010639	UPF1	100	95.255	ENSLOCG00000002072	upf1	100	95.255	Lepisosteus_oculatus
ENSECAG00000010639	UPF1	100	97.872	ENSLAFG00000014963	UPF1	100	97.872	Loxodonta_africana
ENSECAG00000010639	UPF1	100	98.230	ENSMFAG00000037748	UPF1	100	98.230	Macaca_fascicularis
ENSECAG00000010639	UPF1	100	98.230	ENSMMUG00000023286	UPF1	100	98.230	Macaca_mulatta
ENSECAG00000010639	UPF1	100	98.230	ENSMNEG00000000046	UPF1	100	98.230	Macaca_nemestrina
ENSECAG00000010639	UPF1	93	98.668	ENSMLEG00000028404	UPF1	99	98.668	Mandrillus_leucophaeus
ENSECAG00000010639	UPF1	100	91.957	ENSMAMG00000006231	-	100	92.404	Mastacembelus_armatus
ENSECAG00000010639	UPF1	100	90.035	ENSMAMG00000006229	upf1	100	91.093	Mastacembelus_armatus
ENSECAG00000010639	UPF1	100	92.576	ENSMZEG00005016386	-	100	92.487	Maylandia_zebra
ENSECAG00000010639	UPF1	100	90.132	ENSMZEG00005003489	upf1	100	91.320	Maylandia_zebra
ENSECAG00000010639	UPF1	93	97.529	ENSMGAG00000004745	UPF1	100	97.529	Meleagris_gallopavo
ENSECAG00000010639	UPF1	95	96.475	ENSMAUG00000011398	Upf1	97	96.475	Mesocricetus_auratus
ENSECAG00000010639	UPF1	100	99.196	ENSMICG00000001659	UPF1	100	99.196	Microcebus_murinus
ENSECAG00000010639	UPF1	100	97.782	ENSMOCG00000005699	Upf1	100	97.782	Microtus_ochrogaster
ENSECAG00000010639	UPF1	100	90.860	ENSMMOG00000007881	upf1	100	91.316	Mola_mola
ENSECAG00000010639	UPF1	93	92.440	ENSMMOG00000007537	-	99	92.536	Mola_mola
ENSECAG00000010639	UPF1	100	96.911	ENSMODG00000003689	UPF1	100	96.911	Monodelphis_domestica
ENSECAG00000010639	UPF1	100	91.630	ENSMALG00000018100	-	100	91.630	Monopterus_albus
ENSECAG00000010639	UPF1	100	91.129	ENSMALG00000000144	upf1	100	91.398	Monopterus_albus
ENSECAG00000010639	UPF1	100	98.746	MGP_CAROLIEiJ_G0031142	Upf1	100	98.746	Mus_caroli
ENSECAG00000010639	UPF1	100	98.746	ENSMUSG00000058301	Upf1	100	98.746	Mus_musculus
ENSECAG00000010639	UPF1	100	98.746	MGP_PahariEiJ_G0021607	Upf1	100	98.746	Mus_pahari
ENSECAG00000010639	UPF1	100	98.746	MGP_SPRETEiJ_G0032260	Upf1	100	98.746	Mus_spretus
ENSECAG00000010639	UPF1	100	99.553	ENSMPUG00000015516	UPF1	100	99.553	Mustela_putorius_furo
ENSECAG00000010639	UPF1	99	99.103	ENSMLUG00000012122	UPF1	99	99.103	Myotis_lucifugus
ENSECAG00000010639	UPF1	100	97.695	ENSNGAG00000024107	Upf1	100	97.695	Nannospalax_galili
ENSECAG00000010639	UPF1	100	89.215	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSECAG00000010639	UPF1	100	89.483	ENSNBRG00000000670	upf1	100	89.831	Neolamprologus_brichardi
ENSECAG00000010639	UPF1	93	92.864	ENSNLEG00000006062	UPF1	99	92.864	Nomascus_leucogenys
ENSECAG00000010639	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSECAG00000010639	UPF1	93	91.827	ENSOPRG00000014018	UPF1	99	91.827	Ochotona_princeps
ENSECAG00000010639	UPF1	100	96.894	ENSODEG00000012426	UPF1	100	96.894	Octodon_degus
ENSECAG00000010639	UPF1	100	90.396	ENSONIG00000010452	upf1	100	91.585	Oreochromis_niloticus
ENSECAG00000010639	UPF1	100	92.665	ENSONIG00000012729	-	100	92.576	Oreochromis_niloticus
ENSECAG00000010639	UPF1	100	96.546	ENSOANG00000004568	UPF1	100	96.546	Ornithorhynchus_anatinus
ENSECAG00000010639	UPF1	100	92.755	ENSORLG00000008453	upf1	100	92.755	Oryzias_latipes
ENSECAG00000010639	UPF1	100	92.672	ENSORLG00020014758	upf1	100	92.672	Oryzias_latipes_hni
ENSECAG00000010639	UPF1	100	92.672	ENSORLG00015010165	upf1	100	92.672	Oryzias_latipes_hsok
ENSECAG00000010639	UPF1	100	92.844	ENSOMEG00000003665	upf1	100	92.755	Oryzias_melastigma
ENSECAG00000010639	UPF1	100	99.285	ENSOGAG00000012866	UPF1	100	99.285	Otolemur_garnettii
ENSECAG00000010639	UPF1	96	96.593	ENSOARG00000010739	UPF1	100	96.593	Ovis_aries
ENSECAG00000010639	UPF1	96	96.942	ENSPPAG00000043884	UPF1	97	96.942	Pan_paniscus
ENSECAG00000010639	UPF1	100	98.496	ENSPPRG00000023470	UPF1	100	98.496	Panthera_pardus
ENSECAG00000010639	UPF1	93	97.697	ENSPTIG00000010159	UPF1	99	97.697	Panthera_tigris_altaica
ENSECAG00000010639	UPF1	100	98.230	ENSPTRG00000010721	UPF1	100	98.230	Pan_troglodytes
ENSECAG00000010639	UPF1	100	98.230	ENSPANG00000008847	UPF1	100	98.230	Papio_anubis
ENSECAG00000010639	UPF1	91	95.108	ENSPKIG00000006069	upf1	97	95.010	Paramormyrops_kingsleyae
ENSECAG00000010639	UPF1	69	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSECAG00000010639	UPF1	100	89.474	ENSPMGG00000017327	upf1	100	89.581	Periophthalmus_magnuspinnatus
ENSECAG00000010639	UPF1	100	97.870	ENSPEMG00000001085	Upf1	100	97.870	Peromyscus_maniculatus_bairdii
ENSECAG00000010639	UPF1	100	87.111	ENSPMAG00000001206	upf1	100	86.844	Petromyzon_marinus
ENSECAG00000010639	UPF1	100	98.479	ENSPCIG00000006156	UPF1	100	98.479	Phascolarctos_cinereus
ENSECAG00000010639	UPF1	100	92.480	ENSPLAG00000016232	-	100	92.390	Poecilia_latipinna
ENSECAG00000010639	UPF1	100	89.618	ENSPLAG00000018155	-	100	89.530	Poecilia_latipinna
ENSECAG00000010639	UPF1	100	92.397	ENSPMEG00000016319	-	100	92.308	Poecilia_mexicana
ENSECAG00000010639	UPF1	100	90.170	ENSPMEG00000011443	-	100	90.080	Poecilia_mexicana
ENSECAG00000010639	UPF1	100	89.912	ENSPREG00000009940	upf1	100	89.912	Poecilia_reticulata
ENSECAG00000010639	UPF1	100	92.301	ENSPREG00000011247	-	100	92.211	Poecilia_reticulata
ENSECAG00000010639	UPF1	100	93.274	ENSPPYG00000009752	UPF1	100	93.274	Pongo_abelii
ENSECAG00000010639	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSECAG00000010639	UPF1	100	98.496	ENSPCOG00000023813	UPF1	100	98.496	Propithecus_coquereli
ENSECAG00000010639	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSECAG00000010639	UPF1	100	90.132	ENSPNYG00000003694	upf1	100	91.320	Pundamilia_nyererei
ENSECAG00000010639	UPF1	100	92.576	ENSPNYG00000016731	-	100	92.487	Pundamilia_nyererei
ENSECAG00000010639	UPF1	100	93.298	ENSPNAG00000025614	upf1	100	93.744	Pygocentrus_nattereri
ENSECAG00000010639	UPF1	100	98.746	ENSRNOG00000020134	Upf1	100	98.746	Rattus_norvegicus
ENSECAG00000010639	UPF1	96	94.625	ENSRBIG00000013894	UPF1	98	99.562	Rhinopithecus_bieti
ENSECAG00000010639	UPF1	96	96.942	ENSRROG00000040935	UPF1	98	99.562	Rhinopithecus_roxellana
ENSECAG00000010639	UPF1	71	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSECAG00000010639	UPF1	97	95.890	ENSSBOG00000023632	UPF1	99	95.890	Saimiri_boliviensis_boliviensis
ENSECAG00000010639	UPF1	93	97.911	ENSSHAG00000010499	UPF1	100	97.911	Sarcophilus_harrisii
ENSECAG00000010639	UPF1	100	95.170	ENSSFOG00015021095	upf1	99	97.220	Scleropages_formosus
ENSECAG00000010639	UPF1	100	92.672	ENSSMAG00000021018	-	100	92.672	Scophthalmus_maximus
ENSECAG00000010639	UPF1	100	89.311	ENSSMAG00000005055	upf1	100	90.115	Scophthalmus_maximus
ENSECAG00000010639	UPF1	100	90.300	ENSSDUG00000013320	upf1	100	91.182	Seriola_dumerili
ENSECAG00000010639	UPF1	100	92.940	ENSSDUG00000009629	-	100	92.940	Seriola_dumerili
ENSECAG00000010639	UPF1	100	91.103	ENSSLDG00000020868	upf1	100	91.474	Seriola_lalandi_dorsalis
ENSECAG00000010639	UPF1	100	92.940	ENSSLDG00000006878	-	100	92.940	Seriola_lalandi_dorsalis
ENSECAG00000010639	UPF1	100	97.140	ENSSPUG00000010538	UPF1	100	97.140	Sphenodon_punctatus
ENSECAG00000010639	UPF1	100	89.615	ENSSPAG00000000003	upf1	100	89.554	Stegastes_partitus
ENSECAG00000010639	UPF1	100	92.927	ENSSPAG00000011521	-	100	92.838	Stegastes_partitus
ENSECAG00000010639	UPF1	100	99.552	ENSSSCG00000039301	UPF1	100	99.552	Sus_scrofa
ENSECAG00000010639	UPF1	83	90.319	ENSTGUG00000001057	UPF1	100	95.280	Taeniopygia_guttata
ENSECAG00000010639	UPF1	100	90.771	ENSTRUG00000000150	upf1	100	90.771	Takifugu_rubripes
ENSECAG00000010639	UPF1	100	91.853	ENSTRUG00000005131	-	100	91.853	Takifugu_rubripes
ENSECAG00000010639	UPF1	100	95.699	ENSTTRG00000011544	UPF1	100	95.699	Tursiops_truncatus
ENSECAG00000010639	UPF1	100	99.464	ENSUAMG00000007093	UPF1	100	99.464	Ursus_americanus
ENSECAG00000010639	UPF1	95	98.679	ENSUMAG00000006652	UPF1	99	99.896	Ursus_maritimus
ENSECAG00000010639	UPF1	100	99.553	ENSVVUG00000007797	UPF1	100	99.553	Vulpes_vulpes
ENSECAG00000010639	UPF1	100	82.379	ENSXETG00000013602	upf1	100	80.903	Xenopus_tropicalis
ENSECAG00000010639	UPF1	97	90.000	ENSXCOG00000015275	-	96	89.907	Xiphophorus_couchianus
ENSECAG00000010639	UPF1	92	94.762	ENSXCOG00000005764	-	100	94.762	Xiphophorus_couchianus
ENSECAG00000010639	UPF1	100	92.218	ENSXMAG00000002540	-	100	92.129	Xiphophorus_maculatus
ENSECAG00000010639	UPF1	100	90.242	ENSXMAG00000001703	-	100	90.152	Xiphophorus_maculatus