EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000011451 (Gene tree)
Gene ID: 100056692
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 407685 bases
Position: chr4:82974228-83381912
Accession: 23385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000026580	TUDOR	PF00567.24	8.1e-28	1	1
ENSECAP00000037085	TUDOR	PF00567.24	8.4e-28	1	1
ENSECAP00000041612	TUDOR	PF00567.24	8.8e-28	1	1
ENSECAP00000010447	TUDOR	PF00567.24	9.4e-28	1	1
ENSECAP00000046131	TUDOR	PF00567.24	9.7e-28	1	1
ENSECAP00000041612	SNase	PF00565.17	1.1e-69	1	5
ENSECAP00000041612	SNase	PF00565.17	1.1e-69	2	5
ENSECAP00000041612	SNase	PF00565.17	1.1e-69	3	5
ENSECAP00000041612	SNase	PF00565.17	1.1e-69	4	5
ENSECAP00000041612	SNase	PF00565.17	1.1e-69	5	5
ENSECAP00000037085	SNase	PF00565.17	6.1e-69	1	5
ENSECAP00000037085	SNase	PF00565.17	6.1e-69	2	5
ENSECAP00000037085	SNase	PF00565.17	6.1e-69	3	5
ENSECAP00000037085	SNase	PF00565.17	6.1e-69	4	5
ENSECAP00000037085	SNase	PF00565.17	6.1e-69	5	5
ENSECAP00000010447	SNase	PF00565.17	3e-66	1	5
ENSECAP00000010447	SNase	PF00565.17	3e-66	2	5
ENSECAP00000010447	SNase	PF00565.17	3e-66	3	5
ENSECAP00000010447	SNase	PF00565.17	3e-66	4	5
ENSECAP00000010447	SNase	PF00565.17	3e-66	5	5
ENSECAP00000046131	SNase	PF00565.17	3.9e-63	1	5
ENSECAP00000046131	SNase	PF00565.17	3.9e-63	2	5
ENSECAP00000046131	SNase	PF00565.17	3.9e-63	3	5
ENSECAP00000046131	SNase	PF00565.17	3.9e-63	4	5
ENSECAP00000046131	SNase	PF00565.17	3.9e-63	5	5
ENSECAP00000026580	SNase	PF00565.17	2.6e-55	1	3
ENSECAP00000026580	SNase	PF00565.17	2.6e-55	2	3
ENSECAP00000026580	SNase	PF00565.17	2.6e-55	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000048446	-	2928	-	ENSECAP00000037085	925 (aa)	-	-
ENSECAT00000064344	-	2775	-	ENSECAP00000026580	924 (aa)	-	-
ENSECAT00000031286	-	2880	-	ENSECAP00000041612	909 (aa)	XP_001502641	UPI0001795F58
ENSECAT00000013189	-	2844	-	ENSECAP00000010447	947 (aa)	-	F6PZ47
ENSECAT00000042662	-	2754	-	ENSECAP00000046131	917 (aa)	-	-

Gene Model

Click here to download ENSECAG00000011451's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000011451's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000011451	SND1	100	99.011	ENSG00000197157	SND1	100	99.011	Homo_sapiens
ENSECAG00000011451	SND1	100	83.553	ENSAPOG00000017599	snd1	99	84.538	Acanthochromis_polyacanthus
ENSECAG00000011451	SND1	100	99.013	ENSAMEG00000004664	SND1	94	99.013	Ailuropoda_melanoleuca
ENSECAG00000011451	SND1	98	82.083	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSECAG00000011451	SND1	100	83.333	ENSAOCG00000014166	snd1	99	84.316	Amphiprion_ocellaris
ENSECAG00000011451	SND1	100	83.333	ENSAPEG00000007067	snd1	99	84.316	Amphiprion_percula
ENSECAG00000011451	SND1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSECAG00000011451	SND1	100	99.231	ENSANAG00000034463	SND1	100	99.231	Aotus_nancymaae
ENSECAG00000011451	SND1	99	82.967	ENSACLG00000022897	snd1	99	83.964	Astatotilapia_calliptera
ENSECAG00000011451	SND1	99	84.378	ENSAMXG00000016318	snd1	98	84.967	Astyanax_mexicanus
ENSECAG00000011451	SND1	100	98.791	ENSBTAG00000010692	SND1	100	98.791	Bos_taurus
ENSECAG00000011451	SND1	98	46.762	WBGene00006626	tsn-1	98	47.201	Caenorhabditis_elegans
ENSECAG00000011451	SND1	100	99.011	ENSCJAG00000017668	SND1	100	99.011	Callithrix_jacchus
ENSECAG00000011451	SND1	100	99.231	ENSCAFG00000001700	SND1	100	99.231	Canis_familiaris
ENSECAG00000011451	SND1	100	99.231	ENSCAFG00020021639	SND1	100	99.231	Canis_lupus_dingo
ENSECAG00000011451	SND1	100	99.121	ENSCHIG00000023390	SND1	100	99.121	Capra_hircus
ENSECAG00000011451	SND1	72	99.120	ENSTSYG00000004979	SND1	96	99.120	Carlito_syrichta
ENSECAG00000011451	SND1	99	85.206	ENSCAPG00000010677	SND1	98	85.251	Cavia_aperea
ENSECAG00000011451	SND1	100	98.022	ENSCPOG00000006251	SND1	100	98.022	Cavia_porcellus
ENSECAG00000011451	SND1	100	99.341	ENSCCAG00000036847	SND1	100	99.341	Cebus_capucinus
ENSECAG00000011451	SND1	100	99.231	ENSCATG00000035214	SND1	100	99.231	Cercocebus_atys
ENSECAG00000011451	SND1	100	98.352	ENSCLAG00000011796	SND1	100	98.352	Chinchilla_lanigera
ENSECAG00000011451	SND1	100	99.231	ENSCSAG00000010182	SND1	100	99.231	Chlorocebus_sabaeus
ENSECAG00000011451	SND1	78	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSECAG00000011451	SND1	100	91.978	ENSCPBG00000018094	SND1	98	93.161	Chrysemys_picta_bellii
ENSECAG00000011451	SND1	98	57.206	ENSCING00000000524	-	98	57.206	Ciona_intestinalis
ENSECAG00000011451	SND1	99	58.150	ENSCSAVG00000008807	-	99	58.296	Ciona_savignyi
ENSECAG00000011451	SND1	100	99.231	ENSCANG00000035119	SND1	100	99.231	Colobus_angolensis_palliatus
ENSECAG00000011451	SND1	100	97.253	ENSCGRG00001022514	Snd1	100	97.253	Cricetulus_griseus_chok1gshd
ENSECAG00000011451	SND1	97	97.285	ENSCGRG00000012277	Snd1	99	97.285	Cricetulus_griseus_crigri
ENSECAG00000011451	SND1	98	84.004	ENSCSEG00000008661	snd1	98	84.116	Cynoglossus_semilaevis
ENSECAG00000011451	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSECAG00000011451	SND1	100	84.337	ENSDARG00000006766	snd1	97	87.230	Danio_rerio
ENSECAG00000011451	SND1	97	96.167	ENSDNOG00000006795	SND1	100	96.167	Dasypus_novemcinctus
ENSECAG00000011451	SND1	100	98.681	ENSDORG00000000336	Snd1	100	98.681	Dipodomys_ordii
ENSECAG00000011451	SND1	98	51.243	FBgn0035121	Tudor-SN	98	51.243	Drosophila_melanogaster
ENSECAG00000011451	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSECAG00000011451	SND1	60	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSECAG00000011451	SND1	100	99.892	ENSEASG00005008513	SND1	100	99.892	Equus_asinus_asinus
ENSECAG00000011451	SND1	100	86.813	ENSEEUG00000014737	SND1	100	86.813	Erinaceus_europaeus
ENSECAG00000011451	SND1	99	82.237	ENSELUG00000001805	snd1	95	83.278	Esox_lucius
ENSECAG00000011451	SND1	100	99.231	ENSFCAG00000008289	SND1	100	99.231	Felis_catus
ENSECAG00000011451	SND1	100	98.352	ENSFDAG00000015881	SND1	100	98.352	Fukomys_damarensis
ENSECAG00000011451	SND1	99	81.985	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSECAG00000011451	SND1	64	74.576	ENSGMOG00000018932	snd1	64	74.576	Gadus_morhua
ENSECAG00000011451	SND1	100	83.991	ENSGAFG00000008421	snd1	99	85.006	Gambusia_affinis
ENSECAG00000011451	SND1	100	53.746	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSECAG00000011451	SND1	100	99.231	ENSGGOG00000009614	SND1	100	99.231	Gorilla_gorilla
ENSECAG00000011451	SND1	99	83.480	ENSHBUG00000019135	snd1	99	83.964	Haplochromis_burtoni
ENSECAG00000011451	SND1	100	98.022	ENSHGLG00000003618	SND1	100	98.022	Heterocephalus_glaber_female
ENSECAG00000011451	SND1	99	97.569	ENSHGLG00100012449	SND1	100	97.569	Heterocephalus_glaber_male
ENSECAG00000011451	SND1	100	82.785	ENSHCOG00000005266	snd1	98	84.004	Hippocampus_comes
ENSECAG00000011451	SND1	100	82.823	ENSIPUG00000013279	snd1	98	83.853	Ictalurus_punctatus
ENSECAG00000011451	SND1	100	98.681	ENSSTOG00000002140	SND1	100	98.681	Ictidomys_tridecemlineatus
ENSECAG00000011451	SND1	100	99.011	ENSJJAG00000009561	Snd1	100	99.011	Jaculus_jaculus
ENSECAG00000011451	SND1	100	83.772	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSECAG00000011451	SND1	100	84.732	ENSLBEG00000013563	snd1	99	83.315	Labrus_bergylta
ENSECAG00000011451	SND1	99	85.336	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSECAG00000011451	SND1	100	98.242	ENSLAFG00000009696	SND1	100	98.242	Loxodonta_africana
ENSECAG00000011451	SND1	100	99.231	ENSMFAG00000038114	SND1	100	99.231	Macaca_fascicularis
ENSECAG00000011451	SND1	100	99.231	ENSMMUG00000015432	SND1	100	99.231	Macaca_mulatta
ENSECAG00000011451	SND1	100	99.231	ENSMNEG00000039808	SND1	100	99.231	Macaca_nemestrina
ENSECAG00000011451	SND1	100	99.121	ENSMLEG00000029040	SND1	100	99.121	Mandrillus_leucophaeus
ENSECAG00000011451	SND1	99	83.682	ENSMAMG00000011739	snd1	98	84.375	Mastacembelus_armatus
ENSECAG00000011451	SND1	99	82.967	ENSMZEG00005005681	snd1	99	83.964	Maylandia_zebra
ENSECAG00000011451	SND1	100	99.011	ENSMICG00000000097	SND1	100	99.011	Microcebus_murinus
ENSECAG00000011451	SND1	100	98.132	ENSMOCG00000005040	Snd1	100	98.132	Microtus_ochrogaster
ENSECAG00000011451	SND1	100	83.114	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSECAG00000011451	SND1	99	95.875	ENSMODG00000015182	SND1	99	95.875	Monodelphis_domestica
ENSECAG00000011451	SND1	100	83.114	ENSMALG00000012071	snd1	98	83.929	Monopterus_albus
ENSECAG00000011451	SND1	100	97.692	MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	Mus_caroli
ENSECAG00000011451	SND1	100	97.473	ENSMUSG00000001424	Snd1	100	97.473	Mus_musculus
ENSECAG00000011451	SND1	100	97.692	MGP_PahariEiJ_G0021917	Snd1	100	98.145	Mus_pahari
ENSECAG00000011451	SND1	100	97.692	MGP_SPRETEiJ_G0029159	Snd1	100	97.692	Mus_spretus
ENSECAG00000011451	SND1	100	98.571	ENSMPUG00000006545	SND1	100	98.571	Mustela_putorius_furo
ENSECAG00000011451	SND1	97	97.430	ENSMLUG00000017130	SND1	99	97.430	Myotis_lucifugus
ENSECAG00000011451	SND1	100	98.022	ENSNGAG00000011186	Snd1	100	98.022	Nannospalax_galili
ENSECAG00000011451	SND1	99	82.857	ENSNBRG00000006681	snd1	99	83.853	Neolamprologus_brichardi
ENSECAG00000011451	SND1	100	99.121	ENSNLEG00000012263	SND1	100	99.209	Nomascus_leucogenys
ENSECAG00000011451	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSECAG00000011451	SND1	100	98.352	ENSODEG00000011502	SND1	100	98.352	Octodon_degus
ENSECAG00000011451	SND1	99	83.077	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSECAG00000011451	SND1	98	94.369	ENSOANG00000000817	SND1	99	93.980	Ornithorhynchus_anatinus
ENSECAG00000011451	SND1	100	97.473	ENSOCUG00000001620	SND1	100	97.473	Oryctolagus_cuniculus
ENSECAG00000011451	SND1	98	83.799	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSECAG00000011451	SND1	98	83.911	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSECAG00000011451	SND1	98	83.911	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSECAG00000011451	SND1	100	83.004	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSECAG00000011451	SND1	100	98.904	ENSOGAG00000013356	SND1	94	98.904	Otolemur_garnettii
ENSECAG00000011451	SND1	97	96.158	ENSOARG00000002149	SND1	100	96.158	Ovis_aries
ENSECAG00000011451	SND1	100	99.121	ENSPPAG00000042947	SND1	100	99.121	Pan_paniscus
ENSECAG00000011451	SND1	100	99.231	ENSPPRG00000004494	SND1	100	99.231	Panthera_pardus
ENSECAG00000011451	SND1	100	99.121	ENSPTIG00000014214	SND1	100	99.121	Panthera_tigris_altaica
ENSECAG00000011451	SND1	100	99.121	ENSPTRG00000023911	SND1	100	99.121	Pan_troglodytes
ENSECAG00000011451	SND1	97	99.208	ENSPANG00000011997	SND1	99	99.208	Papio_anubis
ENSECAG00000011451	SND1	99	81.367	ENSPKIG00000023494	snd1	98	81.687	Paramormyrops_kingsleyae
ENSECAG00000011451	SND1	92	82.874	ENSPMGG00000003629	snd1	100	82.874	Periophthalmus_magnuspinnatus
ENSECAG00000011451	SND1	100	98.022	ENSPEMG00000010240	Snd1	100	98.022	Peromyscus_maniculatus_bairdii
ENSECAG00000011451	SND1	97	73.785	ENSPMAG00000007915	-	99	73.785	Petromyzon_marinus
ENSECAG00000011451	SND1	100	96.374	ENSPCIG00000011561	SND1	100	96.374	Phascolarctos_cinereus
ENSECAG00000011451	SND1	100	83.443	ENSPFOG00000001557	snd1	99	84.427	Poecilia_formosa
ENSECAG00000011451	SND1	100	83.443	ENSPLAG00000018459	snd1	96	84.427	Poecilia_latipinna
ENSECAG00000011451	SND1	100	83.882	ENSPMEG00000006803	snd1	99	84.872	Poecilia_mexicana
ENSECAG00000011451	SND1	100	83.772	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSECAG00000011451	SND1	93	99.007	ENSPPYG00000017972	SND1	100	99.007	Pongo_abelii
ENSECAG00000011451	SND1	100	86.593	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSECAG00000011451	SND1	100	99.011	ENSPCOG00000026791	SND1	100	99.011	Propithecus_coquereli
ENSECAG00000011451	SND1	100	97.253	ENSPVAG00000013945	SND1	100	97.253	Pteropus_vampyrus
ENSECAG00000011451	SND1	99	82.967	ENSPNYG00000000932	snd1	99	83.964	Pundamilia_nyererei
ENSECAG00000011451	SND1	100	83.589	ENSPNAG00000001206	snd1	98	84.556	Pygocentrus_nattereri
ENSECAG00000011451	SND1	99	97.357	ENSRNOG00000031173	Snd1	99	97.357	Rattus_norvegicus
ENSECAG00000011451	SND1	72	99.248	ENSRBIG00000027782	-	93	99.430	Rhinopithecus_bieti
ENSECAG00000011451	SND1	100	99.231	ENSRROG00000033020	SND1	100	99.231	Rhinopithecus_roxellana
ENSECAG00000011451	SND1	100	99.231	ENSSBOG00000032461	SND1	100	99.231	Saimiri_boliviensis_boliviensis
ENSECAG00000011451	SND1	98	92.905	ENSSHAG00000015359	SND1	100	92.905	Sarcophilus_harrisii
ENSECAG00000011451	SND1	100	82.263	ENSSFOG00015001103	snd1	98	83.352	Scleropages_formosus
ENSECAG00000011451	SND1	98	83.781	ENSSMAG00000001932	snd1	93	83.519	Scophthalmus_maximus
ENSECAG00000011451	SND1	100	83.443	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSECAG00000011451	SND1	100	76.206	ENSSLDG00000001950	snd1	98	76.974	Seriola_lalandi_dorsalis
ENSECAG00000011451	SND1	87	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSECAG00000011451	SND1	72	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSECAG00000011451	SND1	74	84.433	ENSSPAG00000021398	snd1	96	86.562	Stegastes_partitus
ENSECAG00000011451	SND1	100	98.901	ENSSSCG00000016590	SND1	100	98.901	Sus_scrofa
ENSECAG00000011451	SND1	99	83.040	ENSTRUG00000014067	snd1	98	83.557	Takifugu_rubripes
ENSECAG00000011451	SND1	100	83.114	ENSTNIG00000011019	snd1	98	84.116	Tetraodon_nigroviridis
ENSECAG00000011451	SND1	93	93.160	ENSTBEG00000003999	SND1	100	93.160	Tupaia_belangeri
ENSECAG00000011451	SND1	100	94.396	ENSTTRG00000006059	SND1	100	94.396	Tursiops_truncatus
ENSECAG00000011451	SND1	92	98.866	ENSUAMG00000005604	-	94	98.866	Ursus_americanus
ENSECAG00000011451	SND1	69	89.870	ENSUAMG00000002820	-	87	89.333	Ursus_americanus
ENSECAG00000011451	SND1	100	99.011	ENSUMAG00000005960	SND1	100	99.011	Ursus_maritimus
ENSECAG00000011451	SND1	78	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSECAG00000011451	SND1	100	99.011	ENSVVUG00000007226	SND1	100	99.011	Vulpes_vulpes
ENSECAG00000011451	SND1	97	84.407	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSECAG00000011451	SND1	92	81.235	ENSXCOG00000013629	snd1	99	81.354	Xiphophorus_couchianus
ENSECAG00000011451	SND1	100	83.991	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus