EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000012106 (Gene tree)
Gene ID: 100054822
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 272176 bases
Position: chrX:106696960-106969135
Accession: 23317
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000029130	ResIII	PF04851.15	2.8e-12	1	1
ENSECAP00000010767	ResIII	PF04851.15	6e-12	1	1
ENSECAP00000045959	ResIII	PF04851.15	6.7e-12	1	1
ENSECAP00000029130	DEAD	PF00270.29	9.4e-07	1	1
ENSECAP00000010767	DEAD	PF00270.29	1.5e-06	1	1
ENSECAP00000045959	DEAD	PF00270.29	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000065587	-	1573	-	ENSECAP00000029130	385 (aa)	-	-
ENSECAT00000034252	-	4197	-	ENSECAP00000045959	1079 (aa)	-	-
ENSECAT00000013554	-	3256	XM_003365875	ENSECAP00000010767	1061 (aa)	XP_003365923	F6SMK7

Gene Model

Click here to download ENSECAG00000012106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000012106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000012106	SMARCA1	53	42.907	ENSECAG00000008915	CHD1L	63	43.228
ENSECAG00000012106	SMARCA1	57	30.416	ENSECAG00000002513	ERCC6L	54	30.416
ENSECAG00000012106	SMARCA1	52	44.762	ENSECAG00000018810	HELLS	65	48.606
ENSECAG00000012106	SMARCA1	92	85.831	ENSECAG00000002676	SMARCA5	93	85.831

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000012106	SMARCA1	100	98.021	ENSG00000102038	SMARCA1	100	98.021	Homo_sapiens
ENSECAG00000012106	SMARCA1	92	83.709	ENSAPOG00000016035	smarca5	98	84.245	Acanthochromis_polyacanthus
ENSECAG00000012106	SMARCA1	100	97.390	ENSAMEG00000015218	SMARCA1	100	97.390	Ailuropoda_melanoleuca
ENSECAG00000012106	SMARCA1	85	84.275	ENSACIG00000016982	smarca5	99	84.375	Amphilophus_citrinellus
ENSECAG00000012106	SMARCA1	92	83.709	ENSAOCG00000015578	smarca5	95	82.727	Amphiprion_ocellaris
ENSECAG00000012106	SMARCA1	92	83.709	ENSAPEG00000011117	smarca5	99	84.316	Amphiprion_percula
ENSECAG00000012106	SMARCA1	92	83.299	ENSATEG00000012894	smarca5	95	82.727	Anabas_testudineus
ENSECAG00000012106	SMARCA1	93	92.974	ENSAPLG00000013149	SMARCA1	100	92.974	Anas_platyrhynchos
ENSECAG00000012106	SMARCA1	97	89.448	ENSACAG00000011376	SMARCA1	95	91.391	Anolis_carolinensis
ENSECAG00000012106	SMARCA1	98	92.603	ENSANAG00000023098	SMARCA1	100	92.271	Aotus_nancymaae
ENSECAG00000012106	SMARCA1	97	80.799	ENSACLG00000025356	smarca5	95	83.266	Astatotilapia_calliptera
ENSECAG00000012106	SMARCA1	98	80.521	ENSAMXG00000005709	smarca5	94	84.000	Astyanax_mexicanus
ENSECAG00000012106	SMARCA1	87	88.387	ENSAMXG00000011227	smarca1	99	90.061	Astyanax_mexicanus
ENSECAG00000012106	SMARCA1	99	98.395	ENSBTAG00000002292	SMARCA1	99	97.333	Bos_taurus
ENSECAG00000012106	SMARCA1	92	63.232	WBGene00002169	isw-1	97	63.232	Caenorhabditis_elegans
ENSECAG00000012106	SMARCA1	100	97.832	ENSCJAG00000002868	SMARCA1	100	97.832	Callithrix_jacchus
ENSECAG00000012106	SMARCA1	96	96.757	ENSCAFG00000018673	SMARCA1	99	88.941	Canis_familiaris
ENSECAG00000012106	SMARCA1	100	98.775	ENSCAFG00020001751	SMARCA1	100	98.775	Canis_lupus_dingo
ENSECAG00000012106	SMARCA1	100	98.398	ENSCHIG00000009837	SMARCA1	100	98.398	Capra_hircus
ENSECAG00000012106	SMARCA1	94	98.400	ENSTSYG00000004240	SMARCA1	98	97.760	Carlito_syrichta
ENSECAG00000012106	SMARCA1	96	96.404	ENSCPOG00000013601	SMARCA1	95	97.114	Cavia_porcellus
ENSECAG00000012106	SMARCA1	100	94.816	ENSCCAG00000030817	SMARCA1	100	94.816	Cebus_capucinus
ENSECAG00000012106	SMARCA1	100	96.925	ENSCATG00000015921	SMARCA1	99	97.977	Cercocebus_atys
ENSECAG00000012106	SMARCA1	100	96.418	ENSCLAG00000002171	SMARCA1	100	96.418	Chinchilla_lanigera
ENSECAG00000012106	SMARCA1	100	97.926	ENSCSAG00000008460	SMARCA1	100	97.926	Chlorocebus_sabaeus
ENSECAG00000012106	SMARCA1	94	92.707	ENSCPBG00000001146	SMARCA1	94	92.793	Chrysemys_picta_bellii
ENSECAG00000012106	SMARCA1	92	73.085	ENSCING00000004110	swi/snf	98	73.085	Ciona_intestinalis
ENSECAG00000012106	SMARCA1	92	73.089	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSECAG00000012106	SMARCA1	100	97.926	ENSCANG00000007183	SMARCA1	100	97.926	Colobus_angolensis_palliatus
ENSECAG00000012106	SMARCA1	100	94.722	ENSCGRG00001010776	Smarca1	100	94.439	Cricetulus_griseus_chok1gshd
ENSECAG00000012106	SMARCA1	93	95.243	ENSCGRG00000015301	Smarca1	98	95.719	Cricetulus_griseus_crigri
ENSECAG00000012106	SMARCA1	92	83.709	ENSCSEG00000000328	smarca5	95	82.929	Cynoglossus_semilaevis
ENSECAG00000012106	SMARCA1	92	83.096	ENSCVAG00000008668	smarca5	99	83.863	Cyprinodon_variegatus
ENSECAG00000012106	SMARCA1	97	80.117	ENSDARG00000052348	smarca5	96	82.276	Danio_rerio
ENSECAG00000012106	SMARCA1	93	85.094	ENSDARG00000012776	smarca1	98	85.094	Danio_rerio
ENSECAG00000012106	SMARCA1	98	95.954	ENSDNOG00000004315	SMARCA1	99	95.954	Dasypus_novemcinctus
ENSECAG00000012106	SMARCA1	98	95.568	ENSDORG00000009270	Smarca1	99	95.087	Dipodomys_ordii
ENSECAG00000012106	SMARCA1	91	73.081	FBgn0011604	Iswi	98	72.414	Drosophila_melanogaster
ENSECAG00000012106	SMARCA1	77	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSECAG00000012106	SMARCA1	92	81.001	ENSEBUG00000001239	smarca5	96	81.001	Eptatretus_burgeri
ENSECAG00000012106	SMARCA1	94	95.491	ENSEASG00005008218	SMARCA1	99	95.491	Equus_asinus_asinus
ENSECAG00000012106	SMARCA1	75	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSECAG00000012106	SMARCA1	94	86.241	ENSELUG00000010515	smarca1	98	86.583	Esox_lucius
ENSECAG00000012106	SMARCA1	100	98.775	ENSFCAG00000018496	SMARCA1	100	98.775	Felis_catus
ENSECAG00000012106	SMARCA1	86	93.209	ENSFALG00000000209	SMARCA1	98	93.311	Ficedula_albicollis
ENSECAG00000012106	SMARCA1	92	96.771	ENSFDAG00000009818	SMARCA1	98	96.482	Fukomys_damarensis
ENSECAG00000012106	SMARCA1	98	80.039	ENSFHEG00000007687	smarca5	94	82.929	Fundulus_heteroclitus
ENSECAG00000012106	SMARCA1	94	90.462	ENSGALG00000008431	SMARCA1	96	92.710	Gallus_gallus
ENSECAG00000012106	SMARCA1	92	83.503	ENSGAFG00000017731	smarca5	95	82.929	Gambusia_affinis
ENSECAG00000012106	SMARCA1	92	93.416	ENSGAGG00000023575	SMARCA1	100	93.416	Gopherus_agassizii
ENSECAG00000012106	SMARCA1	80	97.735	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSECAG00000012106	SMARCA1	100	96.418	ENSHGLG00000003080	SMARCA1	100	96.418	Heterocephalus_glaber_female
ENSECAG00000012106	SMARCA1	94	96.404	ENSHGLG00100001102	SMARCA1	100	96.404	Heterocephalus_glaber_male
ENSECAG00000012106	SMARCA1	92	83.538	ENSHCOG00000005458	smarca5	95	82.828	Hippocampus_comes
ENSECAG00000012106	SMARCA1	95	85.050	ENSIPUG00000016905	Smarca1	99	86.823	Ictalurus_punctatus
ENSECAG00000012106	SMARCA1	96	80.943	ENSIPUG00000005229	SMARCA5	97	82.657	Ictalurus_punctatus
ENSECAG00000012106	SMARCA1	100	97.644	ENSSTOG00000014524	SMARCA1	100	97.644	Ictidomys_tridecemlineatus
ENSECAG00000012106	SMARCA1	100	94.934	ENSJJAG00000002593	Smarca1	100	94.747	Jaculus_jaculus
ENSECAG00000012106	SMARCA1	92	83.742	ENSKMAG00000003777	smarca5	95	83.030	Kryptolebias_marmoratus
ENSECAG00000012106	SMARCA1	93	82.626	ENSLBEG00000018112	smarca5	95	82.626	Labrus_bergylta
ENSECAG00000012106	SMARCA1	88	83.888	ENSLBEG00000013295	SMARCA1	100	85.082	Labrus_bergylta
ENSECAG00000012106	SMARCA1	96	89.053	ENSLACG00000016697	SMARCA1	98	89.990	Latimeria_chalumnae
ENSECAG00000012106	SMARCA1	94	88.766	ENSLOCG00000014591	smarca1	97	88.766	Lepisosteus_oculatus
ENSECAG00000012106	SMARCA1	94	96.620	ENSLAFG00000000896	SMARCA1	100	96.620	Loxodonta_africana
ENSECAG00000012106	SMARCA1	100	98.021	ENSMFAG00000002117	SMARCA1	99	97.977	Macaca_fascicularis
ENSECAG00000012106	SMARCA1	100	96.925	ENSMMUG00000008818	SMARCA1	99	98.325	Macaca_mulatta
ENSECAG00000012106	SMARCA1	100	96.925	ENSMNEG00000041768	SMARCA1	99	97.977	Macaca_nemestrina
ENSECAG00000012106	SMARCA1	100	97.926	ENSMLEG00000043198	SMARCA1	100	97.926	Mandrillus_leucophaeus
ENSECAG00000012106	SMARCA1	92	83.707	ENSMAMG00000014294	smarca5	95	83.131	Mastacembelus_armatus
ENSECAG00000012106	SMARCA1	97	80.799	ENSMZEG00005009369	smarca5	95	83.266	Maylandia_zebra
ENSECAG00000012106	SMARCA1	95	90.936	ENSMGAG00000007042	SMARCA1	99	91.098	Meleagris_gallopavo
ENSECAG00000012106	SMARCA1	98	95.302	ENSMAUG00000008133	Smarca1	99	95.014	Mesocricetus_auratus
ENSECAG00000012106	SMARCA1	100	97.549	ENSMICG00000015768	SMARCA1	100	97.549	Microcebus_murinus
ENSECAG00000012106	SMARCA1	100	95.591	ENSMOCG00000009464	Smarca1	100	94.934	Microtus_ochrogaster
ENSECAG00000012106	SMARCA1	93	81.111	ENSMMOG00000005547	smarca5	99	81.111	Mola_mola
ENSECAG00000012106	SMARCA1	98	89.382	ENSMODG00000013187	-	99	89.189	Monodelphis_domestica
ENSECAG00000012106	SMARCA1	92	83.333	ENSMALG00000002081	smarca5	97	82.922	Monopterus_albus
ENSECAG00000012106	SMARCA1	100	95.216	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.122	Mus_caroli
ENSECAG00000012106	SMARCA1	100	95.216	ENSMUSG00000031099	Smarca1	100	95.122	Mus_musculus
ENSECAG00000012106	SMARCA1	100	95.216	MGP_PahariEiJ_G0031579	Smarca1	100	95.122	Mus_pahari
ENSECAG00000012106	SMARCA1	100	95.310	MGP_SPRETEiJ_G0034192	Smarca1	100	95.216	Mus_spretus
ENSECAG00000012106	SMARCA1	100	97.484	ENSMPUG00000017423	SMARCA1	95	97.484	Mustela_putorius_furo
ENSECAG00000012106	SMARCA1	98	94.697	ENSMLUG00000029614	SMARCA1	100	93.860	Myotis_lucifugus
ENSECAG00000012106	SMARCA1	98	96.165	ENSNGAG00000006492	Smarca1	99	96.165	Nannospalax_galili
ENSECAG00000012106	SMARCA1	92	83.809	ENSNBRG00000004463	smarca5	99	83.367	Neolamprologus_brichardi
ENSECAG00000012106	SMARCA1	100	96.365	ENSNLEG00000015179	SMARCA1	100	96.365	Nomascus_leucogenys
ENSECAG00000012106	SMARCA1	89	82.038	ENSMEUG00000008819	SMARCA1	99	82.019	Notamacropus_eugenii
ENSECAG00000012106	SMARCA1	96	95.243	ENSODEG00000012163	SMARCA1	99	94.476	Octodon_degus
ENSECAG00000012106	SMARCA1	97	80.897	ENSONIG00000009993	smarca5	95	83.367	Oreochromis_niloticus
ENSECAG00000012106	SMARCA1	92	93.519	ENSOANG00000002862	SMARCA1	100	93.519	Ornithorhynchus_anatinus
ENSECAG00000012106	SMARCA1	100	96.607	ENSOCUG00000001047	SMARCA1	100	96.607	Oryctolagus_cuniculus
ENSECAG00000012106	SMARCA1	92	83.640	ENSORLG00000021998	smarca5	95	82.929	Oryzias_latipes
ENSECAG00000012106	SMARCA1	92	83.742	ENSORLG00020017679	smarca5	96	82.482	Oryzias_latipes_hni
ENSECAG00000012106	SMARCA1	92	83.640	ENSORLG00015017210	smarca5	95	82.828	Oryzias_latipes_hsok
ENSECAG00000012106	SMARCA1	92	83.640	ENSOMEG00000000086	smarca5	95	82.828	Oryzias_melastigma
ENSECAG00000012106	SMARCA1	98	96.381	ENSOGAG00000004399	SMARCA1	99	96.381	Otolemur_garnettii
ENSECAG00000012106	SMARCA1	94	97.730	ENSOARG00000014638	SMARCA1	100	99.184	Ovis_aries
ENSECAG00000012106	SMARCA1	100	98.021	ENSPPAG00000034647	SMARCA1	100	98.021	Pan_paniscus
ENSECAG00000012106	SMARCA1	100	98.963	ENSPPRG00000008929	SMARCA1	100	98.963	Panthera_pardus
ENSECAG00000012106	SMARCA1	94	97.345	ENSPTIG00000000915	SMARCA1	98	97.345	Panthera_tigris_altaica
ENSECAG00000012106	SMARCA1	100	98.021	ENSPTRG00000049876	SMARCA1	99	97.977	Pan_troglodytes
ENSECAG00000012106	SMARCA1	100	98.021	ENSPANG00000003871	SMARCA1	100	98.021	Papio_anubis
ENSECAG00000012106	SMARCA1	89	86.906	ENSPKIG00000013411	smarca1	98	86.722	Paramormyrops_kingsleyae
ENSECAG00000012106	SMARCA1	94	91.412	ENSPSIG00000010101	SMARCA1	100	93.107	Pelodiscus_sinensis
ENSECAG00000012106	SMARCA1	98	96.261	ENSPEMG00000017503	Smarca1	99	96.261	Peromyscus_maniculatus_bairdii
ENSECAG00000012106	SMARCA1	94	92.108	ENSPCIG00000015460	SMARCA1	98	92.192	Phascolarctos_cinereus
ENSECAG00000012106	SMARCA1	92	83.742	ENSPFOG00000007649	smarca5	95	82.929	Poecilia_formosa
ENSECAG00000012106	SMARCA1	92	83.742	ENSPLAG00000003363	smarca5	95	82.929	Poecilia_latipinna
ENSECAG00000012106	SMARCA1	92	83.640	ENSPMEG00000019849	smarca5	95	82.828	Poecilia_mexicana
ENSECAG00000012106	SMARCA1	92	83.640	ENSPREG00000023250	smarca5	95	82.828	Poecilia_reticulata
ENSECAG00000012106	SMARCA1	98	95.005	ENSPPYG00000020703	SMARCA1	100	94.628	Pongo_abelii
ENSECAG00000012106	SMARCA1	73	97.857	ENSPCOG00000020722	SMARCA1	94	93.098	Propithecus_coquereli
ENSECAG00000012106	SMARCA1	92	96.782	ENSPVAG00000003805	SMARCA1	94	96.782	Pteropus_vampyrus
ENSECAG00000012106	SMARCA1	76	82.474	ENSPNYG00000012299	smarca5	92	83.200	Pundamilia_nyererei
ENSECAG00000012106	SMARCA1	100	96.418	ENSRNOG00000003762	Smarca1	100	96.418	Rattus_norvegicus
ENSECAG00000012106	SMARCA1	100	97.926	ENSRROG00000034167	SMARCA1	100	97.926	Rhinopithecus_roxellana
ENSECAG00000012106	SMARCA1	96	96.228	ENSSBOG00000020641	SMARCA1	100	98.878	Saimiri_boliviensis_boliviensis
ENSECAG00000012106	SMARCA1	92	86.536	ENSSHAG00000013518	SMARCA1	99	86.536	Sarcophilus_harrisii
ENSECAG00000012106	SMARCA1	95	86.404	ENSSFOG00015009043	smarca1	98	87.487	Scleropages_formosus
ENSECAG00000012106	SMARCA1	93	82.661	ENSSFOG00015016794	smarca5	100	83.608	Scleropages_formosus
ENSECAG00000012106	SMARCA1	93	82.472	ENSSMAG00000004801	smarca5	95	82.472	Scophthalmus_maximus
ENSECAG00000012106	SMARCA1	92	83.198	ENSSDUG00000020690	smarca5	96	82.626	Seriola_dumerili
ENSECAG00000012106	SMARCA1	92	83.198	ENSSLDG00000025190	smarca5	96	82.626	Seriola_lalandi_dorsalis
ENSECAG00000012106	SMARCA1	85	88.624	ENSSARG00000000842	SMARCA1	92	88.624	Sorex_araneus
ENSECAG00000012106	SMARCA1	95	90.188	ENSSPUG00000000590	SMARCA1	95	91.472	Sphenodon_punctatus
ENSECAG00000012106	SMARCA1	92	83.299	ENSSPAG00000002894	smarca5	97	84.245	Stegastes_partitus
ENSECAG00000012106	SMARCA1	98	98.748	ENSSSCG00000012649	SMARCA1	99	98.748	Sus_scrofa
ENSECAG00000012106	SMARCA1	93	92.668	ENSTGUG00000003899	-	100	92.668	Taeniopygia_guttata
ENSECAG00000012106	SMARCA1	92	83.401	ENSTRUG00000014094	smarca5	95	82.828	Takifugu_rubripes
ENSECAG00000012106	SMARCA1	92	82.787	ENSTNIG00000017717	smarca5	94	81.919	Tetraodon_nigroviridis
ENSECAG00000012106	SMARCA1	92	90.091	ENSTBEG00000014973	SMARCA1	99	90.091	Tupaia_belangeri
ENSECAG00000012106	SMARCA1	91	94.608	ENSTTRG00000006168	SMARCA1	99	94.608	Tursiops_truncatus
ENSECAG00000012106	SMARCA1	100	98.586	ENSUAMG00000020201	SMARCA1	100	98.586	Ursus_americanus
ENSECAG00000012106	SMARCA1	94	93.676	ENSUMAG00000004073	SMARCA1	97	99.027	Ursus_maritimus
ENSECAG00000012106	SMARCA1	73	99.675	ENSVPAG00000010492	-	80	99.675	Vicugna_pacos
ENSECAG00000012106	SMARCA1	94	99.300	ENSVVUG00000008878	SMARCA1	99	99.478	Vulpes_vulpes
ENSECAG00000012106	SMARCA1	94	89.357	ENSXETG00000001526	smarca1	99	89.357	Xenopus_tropicalis
ENSECAG00000012106	SMARCA1	92	83.401	ENSXCOG00000011170	smarca5	98	82.828	Xiphophorus_couchianus
ENSECAG00000012106	SMARCA1	92	83.401	ENSXMAG00000009678	smarca5	97	84.978	Xiphophorus_maculatus