EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000012486 (Gene tree)
Gene ID: 100058134
Gene Symbol: TNRC6C
Alias: -
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 71314 bases
Position: chr11:4405928-4477241
Accession: 24400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000032155	Ago_hook	PF10427.9	7.5e-23	1	1
ENSECAP00000045919	Ago_hook	PF10427.9	1e-22	1	1
ENSECAP00000039855	Ago_hook	PF10427.9	1e-22	1	1
ENSECAP00000010397	Ago_hook	PF10427.9	5.6e-22	1	1
ENSECAP00000039855	RRM_1	PF00076.22	0.00036	1	1
ENSECAP00000045919	RRM_1	PF00076.22	0.00037	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000054749	-	5836	-	ENSECAP00000045919	1879 (aa)	-	-
ENSECAT00000013133	-	5754	-	ENSECAP00000010397	1917 (aa)	-	F6R4M8
ENSECAT00000063577	-	5520	-	ENSECAP00000039855	1839 (aa)	-	-
ENSECAT00000056706	-	5430	-	ENSECAP00000032155	1809 (aa)	-	-

Gene Model

Click here to download ENSECAG00000012486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000012486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000012486	TNRC6C	95	49.403	ENSECAG00000009759	TNRC6B	98	49.885
ENSECAG00000012486	TNRC6C	96	48.713	ENSECAG00000025056	TNRC6A	98	43.005

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000012486	TNRC6C	99	90.662	ENSG00000078687	TNRC6C	100	94.737	Homo_sapiens
ENSECAG00000012486	TNRC6C	71	55.508	ENSAPOG00000019749	tnrc6c1	98	49.892	Acanthochromis_polyacanthus
ENSECAG00000012486	TNRC6C	94	90.568	ENSAMEG00000013756	TNRC6C	99	90.319	Ailuropoda_melanoleuca
ENSECAG00000012486	TNRC6C	93	47.239	ENSACIG00000008075	tnrc6c1	98	53.168	Amphilophus_citrinellus
ENSECAG00000012486	TNRC6C	70	67.357	ENSAOCG00000023968	tnrc6c1	99	71.574	Amphiprion_ocellaris
ENSECAG00000012486	TNRC6C	72	54.348	ENSAPEG00000009020	tnrc6c1	99	49.441	Amphiprion_percula
ENSECAG00000012486	TNRC6C	99	85.714	ENSAPLG00000005456	TNRC6C	100	85.714	Anas_platyrhynchos
ENSECAG00000012486	TNRC6C	99	86.073	ENSACAG00000016198	TNRC6C	98	86.545	Anolis_carolinensis
ENSECAG00000012486	TNRC6C	99	90.031	ENSANAG00000021554	TNRC6C	100	90.828	Aotus_nancymaae
ENSECAG00000012486	TNRC6C	93	47.964	ENSACLG00000000424	tnrc6c1	98	52.517	Astatotilapia_calliptera
ENSECAG00000012486	TNRC6C	97	93.387	ENSBTAG00000018658	TNRC6C	99	93.582	Bos_taurus
ENSECAG00000012486	TNRC6C	99	90.344	ENSCJAG00000019431	TNRC6C	100	90.828	Callithrix_jacchus
ENSECAG00000012486	TNRC6C	99	92.602	ENSCAFG00000005224	TNRC6C	99	92.602	Canis_familiaris
ENSECAG00000012486	TNRC6C	99	92.128	ENSCAFG00020006661	TNRC6C	100	91.869	Canis_lupus_dingo
ENSECAG00000012486	TNRC6C	100	88.670	ENSCHIG00000026004	TNRC6C	100	93.575	Capra_hircus
ENSECAG00000012486	TNRC6C	90	91.652	ENSTSYG00000005403	TNRC6C	100	91.942	Carlito_syrichta
ENSECAG00000012486	TNRC6C	99	83.342	ENSCAPG00000007307	TNRC6C	99	83.797	Cavia_aperea
ENSECAG00000012486	TNRC6C	99	88.223	ENSCPOG00000000467	TNRC6C	100	89.055	Cavia_porcellus
ENSECAG00000012486	TNRC6C	99	90.710	ENSCCAG00000030524	TNRC6C	100	91.483	Cebus_capucinus
ENSECAG00000012486	TNRC6C	99	90.397	ENSCATG00000033135	TNRC6C	100	91.194	Cercocebus_atys
ENSECAG00000012486	TNRC6C	99	90.525	ENSCLAG00000011139	TNRC6C	99	90.632	Chinchilla_lanigera
ENSECAG00000012486	TNRC6C	99	90.723	ENSCSAG00000005167	TNRC6C	99	90.985	Chlorocebus_sabaeus
ENSECAG00000012486	TNRC6C	70	90.590	ENSCHOG00000000088	TNRC6C	75	90.499	Choloepus_hoffmanni
ENSECAG00000012486	TNRC6C	93	87.393	ENSCPBG00000027960	TNRC6C	100	87.559	Chrysemys_picta_bellii
ENSECAG00000012486	TNRC6C	99	90.292	ENSCANG00000041771	TNRC6C	100	91.020	Colobus_angolensis_palliatus
ENSECAG00000012486	TNRC6C	99	87.746	ENSCGRG00001022686	Tnrc6c	100	87.375	Cricetulus_griseus_chok1gshd
ENSECAG00000012486	TNRC6C	99	87.746	ENSCGRG00000018041	Tnrc6c	100	87.375	Cricetulus_griseus_crigri
ENSECAG00000012486	TNRC6C	97	47.538	ENSCSEG00000012744	tnrc6c1	98	47.815	Cynoglossus_semilaevis
ENSECAG00000012486	TNRC6C	99	52.465	ENSDARG00000076847	tnrc6c1	96	55.170	Danio_rerio
ENSECAG00000012486	TNRC6C	99	87.899	ENSDNOG00000003247	TNRC6C	99	88.214	Dasypus_novemcinctus
ENSECAG00000012486	TNRC6C	99	84.542	ENSDORG00000004558	Tnrc6c	100	85.310	Dipodomys_ordii
ENSECAG00000012486	TNRC6C	83	82.404	ENSETEG00000005527	TNRC6C	90	82.404	Echinops_telfairi
ENSECAG00000012486	TNRC6C	90	100.000	ENSEASG00005004799	TNRC6C	100	100.000	Equus_asinus_asinus
ENSECAG00000012486	TNRC6C	89	92.712	ENSEEUG00000010008	TNRC6C	96	92.712	Erinaceus_europaeus
ENSECAG00000012486	TNRC6C	99	89.405	ENSFCAG00000028358	TNRC6C	100	90.710	Felis_catus
ENSECAG00000012486	TNRC6C	90	85.520	ENSFALG00000000848	TNRC6C	100	85.860	Ficedula_albicollis
ENSECAG00000012486	TNRC6C	92	90.841	ENSFDAG00000010368	TNRC6C	100	90.726	Fukomys_damarensis
ENSECAG00000012486	TNRC6C	99	46.751	ENSFHEG00000002936	tnrc6c1	80	51.956	Fundulus_heteroclitus
ENSECAG00000012486	TNRC6C	94	87.389	ENSGALG00000001725	TNRC6C	100	87.715	Gallus_gallus
ENSECAG00000012486	TNRC6C	98	48.258	ENSGAFG00000019019	tnrc6c1	98	47.431	Gambusia_affinis
ENSECAG00000012486	TNRC6C	93	86.830	ENSGAGG00000022043	TNRC6C	99	87.025	Gopherus_agassizii
ENSECAG00000012486	TNRC6C	99	90.089	ENSGGOG00000011304	TNRC6C	100	90.620	Gorilla_gorilla
ENSECAG00000012486	TNRC6C	98	46.539	ENSHBUG00000010846	tnrc6c1	98	52.743	Haplochromis_burtoni
ENSECAG00000012486	TNRC6C	99	90.476	ENSHGLG00000004809	TNRC6C	99	90.423	Heterocephalus_glaber_female
ENSECAG00000012486	TNRC6C	99	89.558	ENSHGLG00100012597	TNRC6C	99	89.824	Heterocephalus_glaber_male
ENSECAG00000012486	TNRC6C	99	52.196	ENSIPUG00000000818	tnrc6c1	98	52.542	Ictalurus_punctatus
ENSECAG00000012486	TNRC6C	99	88.451	ENSSTOG00000009101	TNRC6C	100	88.959	Ictidomys_tridecemlineatus
ENSECAG00000012486	TNRC6C	99	86.961	ENSJJAG00000017055	Tnrc6c	99	86.961	Jaculus_jaculus
ENSECAG00000012486	TNRC6C	98	48.359	ENSKMAG00000021023	tnrc6c1	97	50.267	Kryptolebias_marmoratus
ENSECAG00000012486	TNRC6C	92	75.185	ENSLACG00000015283	TNRC6C	100	75.471	Latimeria_chalumnae
ENSECAG00000012486	TNRC6C	99	56.215	ENSLOCG00000013377	tnrc6c1	98	56.316	Lepisosteus_oculatus
ENSECAG00000012486	TNRC6C	99	89.915	ENSLAFG00000011122	TNRC6C	99	89.755	Loxodonta_africana
ENSECAG00000012486	TNRC6C	99	90.553	ENSMFAG00000043943	TNRC6C	100	91.309	Macaca_fascicularis
ENSECAG00000012486	TNRC6C	99	90.933	ENSMMUG00000011924	TNRC6C	100	91.183	Macaca_mulatta
ENSECAG00000012486	TNRC6C	99	90.553	ENSMNEG00000030405	TNRC6C	100	91.183	Macaca_nemestrina
ENSECAG00000012486	TNRC6C	99	90.501	ENSMLEG00000033436	TNRC6C	100	91.251	Mandrillus_leucophaeus
ENSECAG00000012486	TNRC6C	85	54.438	ENSMAMG00000023613	tnrc6c1	97	51.149	Mastacembelus_armatus
ENSECAG00000012486	TNRC6C	98	46.683	ENSMZEG00005010920	tnrc6c1	98	52.517	Maylandia_zebra
ENSECAG00000012486	TNRC6C	99	79.439	ENSMGAG00000003906	TNRC6C	100	79.522	Meleagris_gallopavo
ENSECAG00000012486	TNRC6C	90	88.378	ENSMAUG00000021618	Tnrc6c	100	88.437	Mesocricetus_auratus
ENSECAG00000012486	TNRC6C	99	90.919	ENSMICG00000003952	TNRC6C	100	91.657	Microcebus_murinus
ENSECAG00000012486	TNRC6C	99	89.771	ENSMOCG00000015879	Tnrc6c	100	90.501	Microtus_ochrogaster
ENSECAG00000012486	TNRC6C	83	55.780	ENSMMOG00000005203	tnrc6c1	97	50.698	Mola_mola
ENSECAG00000012486	TNRC6C	99	85.676	ENSMODG00000001785	TNRC6C	99	85.037	Monodelphis_domestica
ENSECAG00000012486	TNRC6C	99	89.185	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.868	Mus_caroli
ENSECAG00000012486	TNRC6C	99	88.759	ENSMUSG00000025571	Tnrc6c	100	89.465	Mus_musculus
ENSECAG00000012486	TNRC6C	99	89.185	MGP_PahariEiJ_G0018593	Tnrc6c	100	89.868	Mus_pahari
ENSECAG00000012486	TNRC6C	99	88.853	MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.522	Mus_spretus
ENSECAG00000012486	TNRC6C	99	89.717	ENSMPUG00000013348	TNRC6C	97	89.717	Mustela_putorius_furo
ENSECAG00000012486	TNRC6C	99	83.281	ENSMLUG00000014431	TNRC6C	97	83.203	Myotis_lucifugus
ENSECAG00000012486	TNRC6C	99	88.753	ENSNGAG00000012203	Tnrc6c	99	88.966	Nannospalax_galili
ENSECAG00000012486	TNRC6C	93	48.695	ENSNBRG00000005344	tnrc6c1	98	53.365	Neolamprologus_brichardi
ENSECAG00000012486	TNRC6C	99	88.208	ENSNLEG00000000047	TNRC6C	99	88.312	Nomascus_leucogenys
ENSECAG00000012486	TNRC6C	90	80.224	ENSMEUG00000005104	TNRC6C	100	80.165	Notamacropus_eugenii
ENSECAG00000012486	TNRC6C	90	91.281	ENSODEG00000012499	TNRC6C	100	91.281	Octodon_degus
ENSECAG00000012486	TNRC6C	90	50.370	ENSONIG00000002210	tnrc6c1	96	51.499	Oreochromis_niloticus
ENSECAG00000012486	TNRC6C	99	62.093	ENSOANG00000009758	-	100	61.692	Ornithorhynchus_anatinus
ENSECAG00000012486	TNRC6C	85	87.478	ENSOCUG00000006122	TNRC6C	94	72.074	Oryctolagus_cuniculus
ENSECAG00000012486	TNRC6C	93	47.710	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSECAG00000012486	TNRC6C	93	47.599	ENSORLG00020016510	tnrc6c1	100	48.414	Oryzias_latipes_hni
ENSECAG00000012486	TNRC6C	79	42.502	ENSORLG00015000171	tnrc6c1	98	43.154	Oryzias_latipes_hsok
ENSECAG00000012486	TNRC6C	93	48.091	ENSOMEG00000000357	tnrc6c1	99	47.886	Oryzias_melastigma
ENSECAG00000012486	TNRC6C	90	89.739	ENSOGAG00000007197	TNRC6C	100	89.565	Otolemur_garnettii
ENSECAG00000012486	TNRC6C	95	85.855	ENSOARG00000006041	TNRC6C	97	85.800	Ovis_aries
ENSECAG00000012486	TNRC6C	99	90.710	ENSPPAG00000027160	TNRC6C	100	91.425	Pan_paniscus
ENSECAG00000012486	TNRC6C	99	89.823	ENSPPRG00000018881	TNRC6C	100	90.888	Panthera_pardus
ENSECAG00000012486	TNRC6C	69	77.727	ENSPTIG00000008791	TNRC6C	70	77.311	Panthera_tigris_altaica
ENSECAG00000012486	TNRC6C	99	90.762	ENSPTRG00000009699	TNRC6C	100	91.425	Pan_troglodytes
ENSECAG00000012486	TNRC6C	99	90.553	ENSPANG00000019994	TNRC6C	100	91.346	Papio_anubis
ENSECAG00000012486	TNRC6C	86	53.157	ENSPKIG00000005428	tnrc6c1	100	50.415	Paramormyrops_kingsleyae
ENSECAG00000012486	TNRC6C	92	85.049	ENSPSIG00000018069	TNRC6C	100	85.336	Pelodiscus_sinensis
ENSECAG00000012486	TNRC6C	87	57.717	ENSPMGG00000022911	tnrc6c1	97	63.265	Periophthalmus_magnuspinnatus
ENSECAG00000012486	TNRC6C	99	89.345	ENSPEMG00000009785	Tnrc6c	99	89.291	Peromyscus_maniculatus_bairdii
ENSECAG00000012486	TNRC6C	54	84.671	ENSPCIG00000017421	-	99	84.671	Phascolarctos_cinereus
ENSECAG00000012486	TNRC6C	97	48.519	ENSPFOG00000012560	tnrc6c1	98	55.833	Poecilia_formosa
ENSECAG00000012486	TNRC6C	90	49.774	ENSPLAG00000021055	tnrc6c1	97	50.175	Poecilia_latipinna
ENSECAG00000012486	TNRC6C	99	91.300	ENSPPYG00000008679	TNRC6C	97	91.562	Pongo_abelii
ENSECAG00000012486	TNRC6C	87	92.671	ENSPCAG00000012510	TNRC6C	89	92.671	Procavia_capensis
ENSECAG00000012486	TNRC6C	90	92.485	ENSPCOG00000021451	TNRC6C	100	92.526	Propithecus_coquereli
ENSECAG00000012486	TNRC6C	89	95.763	ENSPVAG00000002008	TNRC6C	95	95.763	Pteropus_vampyrus
ENSECAG00000012486	TNRC6C	93	47.586	ENSPNYG00000014477	tnrc6c1	98	52.049	Pundamilia_nyererei
ENSECAG00000012486	TNRC6C	90	89.639	ENSRNOG00000022395	Tnrc6c	100	89.402	Rattus_norvegicus
ENSECAG00000012486	TNRC6C	99	90.083	ENSRBIG00000027777	TNRC6C	100	91.194	Rhinopithecus_bieti
ENSECAG00000012486	TNRC6C	99	90.501	ENSRROG00000042912	TNRC6C	100	91.251	Rhinopithecus_roxellana
ENSECAG00000012486	TNRC6C	99	90.084	ENSSBOG00000023981	TNRC6C	100	90.846	Saimiri_boliviensis_boliviensis
ENSECAG00000012486	TNRC6C	93	57.143	ENSSFOG00015006475	tnrc6c1	99	52.488	Scleropages_formosus
ENSECAG00000012486	TNRC6C	62	57.460	ENSSFOG00015004735	-	99	60.995	Scleropages_formosus
ENSECAG00000012486	TNRC6C	93	47.687	ENSSMAG00000012761	tnrc6c1	99	49.971	Scophthalmus_maximus
ENSECAG00000012486	TNRC6C	94	49.648	ENSSDUG00000002366	tnrc6c1	99	50.325	Seriola_dumerili
ENSECAG00000012486	TNRC6C	90	49.056	ENSSLDG00000025613	tnrc6c1	97	50.000	Seriola_lalandi_dorsalis
ENSECAG00000012486	TNRC6C	85	95.798	ENSSARG00000006816	TNRC6C	91	95.798	Sorex_araneus
ENSECAG00000012486	TNRC6C	81	85.605	ENSSPUG00000007341	TNRC6C	99	86.022	Sphenodon_punctatus
ENSECAG00000012486	TNRC6C	71	53.994	ENSSPAG00000014977	tnrc6c1	98	48.483	Stegastes_partitus
ENSECAG00000012486	TNRC6C	87	91.858	ENSSSCG00000034373	TNRC6C	100	88.618	Sus_scrofa
ENSECAG00000012486	TNRC6C	92	87.809	ENSTGUG00000007733	TNRC6C	100	87.924	Taeniopygia_guttata
ENSECAG00000012486	TNRC6C	71	54.705	ENSTRUG00000011685	tnrc6c1	97	50.312	Takifugu_rubripes
ENSECAG00000012486	TNRC6C	89	54.598	ENSTNIG00000005273	tnrc6c1	100	60.606	Tetraodon_nigroviridis
ENSECAG00000012486	TNRC6C	57	87.938	ENSTBEG00000005046	TNRC6C	95	87.938	Tupaia_belangeri
ENSECAG00000012486	TNRC6C	92	92.348	ENSTTRG00000010828	TNRC6C	99	92.348	Tursiops_truncatus
ENSECAG00000012486	TNRC6C	99	90.392	ENSUMAG00000013614	TNRC6C	99	90.496	Ursus_maritimus
ENSECAG00000012486	TNRC6C	90	93.234	ENSVVUG00000015268	TNRC6C	100	93.234	Vulpes_vulpes
ENSECAG00000012486	TNRC6C	90	74.442	ENSXETG00000019470	tnrc6c	100	74.074	Xenopus_tropicalis
ENSECAG00000012486	TNRC6C	97	49.498	ENSXMAG00000025971	tnrc6c1	99	50.000	Xiphophorus_maculatus