EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000012679 (Gene tree)
Gene ID: 100057721
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 58649 bases
Position: chr18:33583706-33642354
Accession: 22388
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000010619	Rif1_N	PF12231.8	4.8e-77	1	1
ENSECAP00000033045	Rif1_N	PF12231.8	5.1e-77	1	1
ENSECAP00000028481	Rif1_N	PF12231.8	5.2e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000036741	-	9018	-	ENSECAP00000028481	2476 (aa)	XP_023478635	UPI000C9E6285
ENSECAT00000013380	-	7183	-	ENSECAP00000010619	2390 (aa)	-	F6QV31
ENSECAT00000035556	-	8940	-	ENSECAP00000033045	2450 (aa)	XP_023478637	UPI000C9DC720

Gene Model

Click here to download ENSECAG00000012679's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000012679's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000012679	RIF1	100	90.483	ENSG00000080345	RIF1	97	90.483	Homo_sapiens
ENSECAG00000012679	RIF1	62	59.517	ENSAPOG00000011073	rif1	60	59.517	Acanthochromis_polyacanthus
ENSECAG00000012679	RIF1	99	93.202	ENSAMEG00000008461	RIF1	96	93.202	Ailuropoda_melanoleuca
ENSECAG00000012679	RIF1	63	60.817	ENSACIG00000017765	rif1	68	60.817	Amphilophus_citrinellus
ENSECAG00000012679	RIF1	63	59.578	ENSAOCG00000017231	rif1	62	59.578	Amphiprion_ocellaris
ENSECAG00000012679	RIF1	64	57.033	ENSAPEG00000013228	rif1	65	57.033	Amphiprion_percula
ENSECAG00000012679	RIF1	61	57.466	ENSATEG00000022887	rif1	61	57.466	Anabas_testudineus
ENSECAG00000012679	RIF1	86	68.925	ENSAPLG00000007092	RIF1	94	68.925	Anas_platyrhynchos
ENSECAG00000012679	RIF1	82	69.055	ENSACAG00000003714	RIF1	86	69.055	Anolis_carolinensis
ENSECAG00000012679	RIF1	100	90.196	ENSANAG00000024840	RIF1	97	90.196	Aotus_nancymaae
ENSECAG00000012679	RIF1	50	51.386	ENSAMXG00000010910	rif1	65	50.448	Astyanax_mexicanus
ENSECAG00000012679	RIF1	94	94.291	ENSBTAG00000021020	RIF1	96	94.291	Bos_taurus
ENSECAG00000012679	RIF1	100	90.196	ENSCJAG00000003138	RIF1	97	90.196	Callithrix_jacchus
ENSECAG00000012679	RIF1	100	91.239	ENSCAFG00000005670	RIF1	94	91.239	Canis_familiaris
ENSECAG00000012679	RIF1	100	91.239	ENSCAFG00020016401	RIF1	96	91.239	Canis_lupus_dingo
ENSECAG00000012679	RIF1	99	92.598	ENSCHIG00000020327	RIF1	96	92.598	Capra_hircus
ENSECAG00000012679	RIF1	99	80.967	ENSTSYG00000008861	RIF1	96	80.967	Carlito_syrichta
ENSECAG00000012679	RIF1	78	79.070	ENSCAPG00000008957	RIF1	96	79.070	Cavia_aperea
ENSECAG00000012679	RIF1	99	83.982	ENSCPOG00000037898	RIF1	96	83.982	Cavia_porcellus
ENSECAG00000012679	RIF1	100	85.520	ENSCCAG00000024760	RIF1	96	85.520	Cebus_capucinus
ENSECAG00000012679	RIF1	100	90.799	ENSCATG00000033353	RIF1	97	90.799	Cercocebus_atys
ENSECAG00000012679	RIF1	96	90.106	ENSCLAG00000001517	RIF1	96	90.106	Chinchilla_lanigera
ENSECAG00000012679	RIF1	100	90.799	ENSCSAG00000016089	RIF1	97	90.799	Chlorocebus_sabaeus
ENSECAG00000012679	RIF1	97	79.130	ENSCHOG00000007187	RIF1	97	79.130	Choloepus_hoffmanni
ENSECAG00000012679	RIF1	86	70.501	ENSCPBG00000025885	RIF1	93	71.598	Chrysemys_picta_bellii
ENSECAG00000012679	RIF1	100	87.481	ENSCANG00000028962	RIF1	96	90.950	Colobus_angolensis_palliatus
ENSECAG00000012679	RIF1	99	82.362	ENSCGRG00001024589	Rif1	97	82.362	Cricetulus_griseus_chok1gshd
ENSECAG00000012679	RIF1	98	86.435	ENSCGRG00000010713	Rif1	97	86.435	Cricetulus_griseus_crigri
ENSECAG00000012679	RIF1	70	57.781	ENSCSEG00000003945	rif1	67	57.848	Cynoglossus_semilaevis
ENSECAG00000012679	RIF1	62	55.230	ENSCVAG00000022479	rif1	65	55.230	Cyprinodon_variegatus
ENSECAG00000012679	RIF1	51	51.270	ENSDARG00000062650	rif1	50	56.559	Danio_rerio
ENSECAG00000012679	RIF1	99	86.254	ENSDNOG00000011194	RIF1	94	86.254	Dasypus_novemcinctus
ENSECAG00000012679	RIF1	91	75.602	ENSETEG00000012421	RIF1	92	72.555	Echinops_telfairi
ENSECAG00000012679	RIF1	100	98.185	ENSEASG00005023434	RIF1	99	98.350	Equus_asinus_asinus
ENSECAG00000012679	RIF1	60	60.123	ENSELUG00000006826	rif1	52	60.243	Esox_lucius
ENSECAG00000012679	RIF1	100	93.051	ENSFCAG00000029742	RIF1	97	93.051	Felis_catus
ENSECAG00000012679	RIF1	77	73.156	ENSFALG00000013874	RIF1	92	73.156	Ficedula_albicollis
ENSECAG00000012679	RIF1	99	88.066	ENSFDAG00000006538	RIF1	96	88.066	Fukomys_damarensis
ENSECAG00000012679	RIF1	61	58.912	ENSFHEG00000013721	rif1	63	57.602	Fundulus_heteroclitus
ENSECAG00000012679	RIF1	52	57.927	ENSGMOG00000003517	rif1	77	58.171	Gadus_morhua
ENSECAG00000012679	RIF1	79	75.148	ENSGALG00000012484	RIF1	88	75.148	Gallus_gallus
ENSECAG00000012679	RIF1	61	59.729	ENSGAFG00000017196	rif1	70	59.729	Gambusia_affinis
ENSECAG00000012679	RIF1	57	59.105	ENSGACG00000008579	rif1	65	56.098	Gasterosteus_aculeatus
ENSECAG00000012679	RIF1	87	72.659	ENSGAGG00000012595	RIF1	96	71.557	Gopherus_agassizii
ENSECAG00000012679	RIF1	91	90.483	ENSGGOG00000040178	RIF1	96	90.544	Gorilla_gorilla
ENSECAG00000012679	RIF1	77	59.731	ENSHBUG00000007125	rif1	67	59.731	Haplochromis_burtoni
ENSECAG00000012679	RIF1	94	89.426	ENSHGLG00100009807	RIF1	96	89.426	Heterocephalus_glaber_male
ENSECAG00000012679	RIF1	61	57.466	ENSHCOG00000015943	rif1	56	57.466	Hippocampus_comes
ENSECAG00000012679	RIF1	71	52.760	ENSIPUG00000021703	rif1	64	52.869	Ictalurus_punctatus
ENSECAG00000012679	RIF1	100	90.318	ENSSTOG00000020712	RIF1	97	90.318	Ictidomys_tridecemlineatus
ENSECAG00000012679	RIF1	99	81.764	ENSJJAG00000023000	Rif1	96	81.764	Jaculus_jaculus
ENSECAG00000012679	RIF1	62	58.234	ENSKMAG00000002852	rif1	64	58.234	Kryptolebias_marmoratus
ENSECAG00000012679	RIF1	62	56.911	ENSLBEG00000023196	rif1	59	56.911	Labrus_bergylta
ENSECAG00000012679	RIF1	84	62.343	ENSLACG00000005425	RIF1	89	61.471	Latimeria_chalumnae
ENSECAG00000012679	RIF1	62	54.353	ENSLOCG00000002657	rif1	84	51.299	Lepisosteus_oculatus
ENSECAG00000012679	RIF1	99	89.124	ENSLAFG00000009796	RIF1	96	89.124	Loxodonta_africana
ENSECAG00000012679	RIF1	100	90.649	ENSMFAG00000032233	RIF1	97	90.649	Macaca_fascicularis
ENSECAG00000012679	RIF1	100	90.498	ENSMMUG00000008611	RIF1	97	90.498	Macaca_mulatta
ENSECAG00000012679	RIF1	100	90.649	ENSMNEG00000031616	RIF1	97	90.649	Macaca_nemestrina
ENSECAG00000012679	RIF1	100	90.799	ENSMLEG00000042945	RIF1	97	90.799	Mandrillus_leucophaeus
ENSECAG00000012679	RIF1	62	57.553	ENSMAMG00000001745	rif1	59	50.756	Mastacembelus_armatus
ENSECAG00000012679	RIF1	63	59.431	ENSMZEG00005020920	rif1	68	59.431	Maylandia_zebra
ENSECAG00000012679	RIF1	83	71.905	ENSMGAG00000012732	RIF1	87	71.905	Meleagris_gallopavo
ENSECAG00000012679	RIF1	95	88.579	ENSMAUG00000013158	Rif1	99	88.579	Mesocricetus_auratus
ENSECAG00000012679	RIF1	100	91.101	ENSMICG00000046127	RIF1	97	91.101	Microcebus_murinus
ENSECAG00000012679	RIF1	99	82.326	ENSMOCG00000009381	Rif1	96	82.326	Microtus_ochrogaster
ENSECAG00000012679	RIF1	60	57.681	ENSMMOG00000006519	rif1	60	57.681	Mola_mola
ENSECAG00000012679	RIF1	100	80.723	ENSMODG00000003703	RIF1	96	80.723	Monodelphis_domestica
ENSECAG00000012679	RIF1	65	48.142	ENSMALG00000016759	rif1	74	51.784	Monopterus_albus
ENSECAG00000012679	RIF1	99	86.556	MGP_CAROLIEiJ_G0023555	Rif1	96	86.556	Mus_caroli
ENSECAG00000012679	RIF1	99	85.202	ENSMUSG00000036202	Rif1	97	85.202	Mus_musculus
ENSECAG00000012679	RIF1	99	80.030	MGP_PahariEiJ_G0025006	Rif1	96	80.030	Mus_pahari
ENSECAG00000012679	RIF1	99	86.103	MGP_SPRETEiJ_G0024476	Rif1	96	86.103	Mus_spretus
ENSECAG00000012679	RIF1	100	92.749	ENSMPUG00000000371	RIF1	97	92.749	Mustela_putorius_furo
ENSECAG00000012679	RIF1	89	90.465	ENSMLUG00000003376	RIF1	96	90.465	Myotis_lucifugus
ENSECAG00000012679	RIF1	100	72.735	ENSNGAG00000009268	Rif1	100	72.694	Nannospalax_galili
ENSECAG00000012679	RIF1	78	44.838	ENSNBRG00000014257	rif1	67	57.122	Neolamprologus_brichardi
ENSECAG00000012679	RIF1	100	88.262	ENSNLEG00000010955	RIF1	96	88.262	Nomascus_leucogenys
ENSECAG00000012679	RIF1	76	87.719	ENSMEUG00000007601	-	80	87.719	Notamacropus_eugenii
ENSECAG00000012679	RIF1	99	83.333	ENSODEG00000003950	RIF1	97	83.934	Octodon_degus
ENSECAG00000012679	RIF1	62	59.607	ENSONIG00000013657	rif1	63	59.607	Oreochromis_niloticus
ENSECAG00000012679	RIF1	79	79.206	ENSOANG00000006078	-	92	75.800	Ornithorhynchus_anatinus
ENSECAG00000012679	RIF1	100	89.275	ENSOCUG00000017435	RIF1	96	89.426	Oryctolagus_cuniculus
ENSECAG00000012679	RIF1	61	55.689	ENSORLG00020001302	rif1	64	55.689	Oryzias_latipes_hni
ENSECAG00000012679	RIF1	61	55.689	ENSORLG00015000009	rif1	63	55.689	Oryzias_latipes_hsok
ENSECAG00000012679	RIF1	60	56.185	ENSOMEG00000021513	rif1	63	56.185	Oryzias_melastigma
ENSECAG00000012679	RIF1	99	89.291	ENSOGAG00000006141	RIF1	96	89.291	Otolemur_garnettii
ENSECAG00000012679	RIF1	99	93.665	ENSOARG00000008930	RIF1	96	93.665	Ovis_aries
ENSECAG00000012679	RIF1	100	90.332	ENSPPAG00000023754	RIF1	97	90.332	Pan_paniscus
ENSECAG00000012679	RIF1	100	93.051	ENSPPRG00000003618	RIF1	97	93.051	Panthera_pardus
ENSECAG00000012679	RIF1	100	93.051	ENSPTIG00000020652	RIF1	97	93.051	Panthera_tigris_altaica
ENSECAG00000012679	RIF1	100	90.332	ENSPTRG00000012534	RIF1	97	90.332	Pan_troglodytes
ENSECAG00000012679	RIF1	100	90.649	ENSPANG00000008525	RIF1	97	90.649	Papio_anubis
ENSECAG00000012679	RIF1	69	58.659	ENSPKIG00000004267	rif1	66	58.872	Paramormyrops_kingsleyae
ENSECAG00000012679	RIF1	63	46.073	ENSPMGG00000016141	rif1	77	45.315	Periophthalmus_magnuspinnatus
ENSECAG00000012679	RIF1	98	87.879	ENSPEMG00000000446	Rif1	96	87.879	Peromyscus_maniculatus_bairdii
ENSECAG00000012679	RIF1	97	81.777	ENSPCIG00000009185	RIF1	96	81.777	Phascolarctos_cinereus
ENSECAG00000012679	RIF1	62	52.227	ENSPFOG00000017804	rif1	66	52.308	Poecilia_formosa
ENSECAG00000012679	RIF1	56	52.056	ENSPFOG00000000554	-	64	52.056	Poecilia_formosa
ENSECAG00000012679	RIF1	62	55.432	ENSPLAG00000017945	rif1	70	51.354	Poecilia_latipinna
ENSECAG00000012679	RIF1	53	49.709	ENSPMEG00000006897	-	64	49.709	Poecilia_mexicana
ENSECAG00000012679	RIF1	65	51.379	ENSPREG00000018052	rif1	67	54.710	Poecilia_reticulata
ENSECAG00000012679	RIF1	100	90.483	ENSPPYG00000012846	RIF1	97	90.483	Pongo_abelii
ENSECAG00000012679	RIF1	86	84.314	ENSPCAG00000009032	RIF1	83	84.314	Procavia_capensis
ENSECAG00000012679	RIF1	100	90.347	ENSPCOG00000027888	RIF1	97	90.347	Propithecus_coquereli
ENSECAG00000012679	RIF1	93	98.333	ENSPVAG00000014276	RIF1	92	98.333	Pteropus_vampyrus
ENSECAG00000012679	RIF1	78	45.133	ENSPNYG00000012940	rif1	65	56.652	Pundamilia_nyererei
ENSECAG00000012679	RIF1	61	61.043	ENSPNAG00000016685	rif1	61	61.237	Pygocentrus_nattereri
ENSECAG00000012679	RIF1	99	86.248	ENSRNOG00000054901	Rif1	96	86.248	Rattus_norvegicus
ENSECAG00000012679	RIF1	100	90.799	ENSRBIG00000003704	RIF1	96	90.799	Rhinopithecus_bieti
ENSECAG00000012679	RIF1	100	90.950	ENSRROG00000028206	RIF1	97	90.950	Rhinopithecus_roxellana
ENSECAG00000012679	RIF1	97	92.473	ENSSBOG00000029530	RIF1	100	92.473	Saimiri_boliviensis_boliviensis
ENSECAG00000012679	RIF1	62	58.744	ENSSMAG00000011704	rif1	57	60.000	Scophthalmus_maximus
ENSECAG00000012679	RIF1	61	58.824	ENSSDUG00000015632	rif1	63	58.761	Seriola_dumerili
ENSECAG00000012679	RIF1	66	84.615	ENSSARG00000007161	-	64	84.615	Sorex_araneus
ENSECAG00000012679	RIF1	86	67.147	ENSSPUG00000003062	RIF1	95	67.147	Sphenodon_punctatus
ENSECAG00000012679	RIF1	50	58.163	ENSSPAG00000018359	rif1	73	58.163	Stegastes_partitus
ENSECAG00000012679	RIF1	100	92.436	ENSSSCG00000016395	RIF1	97	92.436	Sus_scrofa
ENSECAG00000012679	RIF1	62	58.459	ENSTRUG00000015808	rif1	66	58.459	Takifugu_rubripes
ENSECAG00000012679	RIF1	64	55.230	ENSTNIG00000011538	rif1	69	55.230	Tetraodon_nigroviridis
ENSECAG00000012679	RIF1	83	91.772	ENSTBEG00000016082	RIF1	82	91.772	Tupaia_belangeri
ENSECAG00000012679	RIF1	100	93.353	ENSTTRG00000011190	RIF1	97	93.353	Tursiops_truncatus
ENSECAG00000012679	RIF1	90	90.758	ENSUAMG00000026385	RIF1	97	91.154	Ursus_americanus
ENSECAG00000012679	RIF1	100	91.843	ENSUMAG00000000337	RIF1	99	91.431	Ursus_maritimus
ENSECAG00000012679	RIF1	100	92.447	ENSVPAG00000002162	RIF1	97	92.447	Vicugna_pacos
ENSECAG00000012679	RIF1	100	91.088	ENSVVUG00000011293	RIF1	96	91.088	Vulpes_vulpes
ENSECAG00000012679	RIF1	84	59.770	ENSXETG00000004530	rif1	70	56.952	Xenopus_tropicalis
ENSECAG00000012679	RIF1	63	48.456	ENSXMAG00000000506	rif1	65	48.700	Xiphophorus_maculatus