EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000012898 (Gene tree)
Gene ID: 100058786
Gene Symbol: PNLDC1
Alias: -
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 17921 bases
Position: chr31:8507561-8525481
Accession: 21622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000010786	CAF1	PF04857.20	9.3e-78	1	1
ENSECAP00000044818	CAF1	PF04857.20	3.8e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000060735	-	1696	-	ENSECAP00000044818	495 (aa)	-	-
ENSECAT00000013575	-	1804	-	ENSECAP00000010786	531 (aa)	XP_023488712	F6SFG8

Gene Model

Click here to download ENSECAG00000012898's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000012898's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000012898	PNLDC1	99	88.302	ENSG00000146453	PNLDC1	99	88.302	Homo_sapiens
ENSECAG00000012898	PNLDC1	99	91.493	ENSAMEG00000015371	PNLDC1	99	91.493	Ailuropoda_melanoleuca
ENSECAG00000012898	PNLDC1	95	60.234	ENSAPLG00000007014	PNLDC1	98	60.234	Anas_platyrhynchos
ENSECAG00000012898	PNLDC1	99	60.227	ENSACAG00000013667	PNLDC1	99	60.227	Anolis_carolinensis
ENSECAG00000012898	PNLDC1	100	87.194	ENSANAG00000034713	PNLDC1	100	87.671	Aotus_nancymaae
ENSECAG00000012898	PNLDC1	95	91.107	ENSBTAG00000015166	PNLDC1	96	91.107	Bos_taurus
ENSECAG00000012898	PNLDC1	100	86.441	ENSCJAG00000011865	PNLDC1	100	86.441	Callithrix_jacchus
ENSECAG00000012898	PNLDC1	100	93.974	ENSCAFG00000000740	PNLDC1	100	93.974	Canis_familiaris
ENSECAG00000012898	PNLDC1	100	91.714	ENSCAFG00020017742	PNLDC1	100	91.714	Canis_lupus_dingo
ENSECAG00000012898	PNLDC1	100	88.931	ENSCHIG00000003141	PNLDC1	100	88.931	Capra_hircus
ENSECAG00000012898	PNLDC1	100	85.687	ENSTSYG00000005606	PNLDC1	100	85.687	Carlito_syrichta
ENSECAG00000012898	PNLDC1	100	63.346	ENSCAPG00000011893	PNLDC1	100	63.346	Cavia_aperea
ENSECAG00000012898	PNLDC1	100	80.263	ENSCPOG00000019565	PNLDC1	100	80.263	Cavia_porcellus
ENSECAG00000012898	PNLDC1	100	87.194	ENSCCAG00000026232	PNLDC1	100	87.194	Cebus_capucinus
ENSECAG00000012898	PNLDC1	100	88.324	ENSCATG00000033196	PNLDC1	100	88.324	Cercocebus_atys
ENSECAG00000012898	PNLDC1	99	85.606	ENSCLAG00000003228	PNLDC1	99	85.606	Chinchilla_lanigera
ENSECAG00000012898	PNLDC1	97	87.791	ENSCSAG00000012478	PNLDC1	99	87.791	Chlorocebus_sabaeus
ENSECAG00000012898	PNLDC1	96	66.602	ENSCPBG00000004050	PNLDC1	100	66.602	Chrysemys_picta_bellii
ENSECAG00000012898	PNLDC1	66	36.424	ENSCING00000010142	-	61	36.424	Ciona_intestinalis
ENSECAG00000012898	PNLDC1	95	88.142	ENSCANG00000043076	PNLDC1	97	88.142	Colobus_angolensis_palliatus
ENSECAG00000012898	PNLDC1	100	80.979	ENSCGRG00001007470	-	99	80.979	Cricetulus_griseus_chok1gshd
ENSECAG00000012898	PNLDC1	100	65.160	ENSCGRG00001011981	-	99	65.160	Cricetulus_griseus_chok1gshd
ENSECAG00000012898	PNLDC1	100	67.608	ENSCGRG00000003103	-	99	67.608	Cricetulus_griseus_crigri
ENSECAG00000012898	PNLDC1	100	80.979	ENSCGRG00000010221	-	99	80.979	Cricetulus_griseus_crigri
ENSECAG00000012898	PNLDC1	70	33.793	ENSDARG00000102634	parn	80	34.247	Danio_rerio
ENSECAG00000012898	PNLDC1	100	87.218	ENSDNOG00000013709	PNLDC1	100	87.218	Dasypus_novemcinctus
ENSECAG00000012898	PNLDC1	100	80.150	ENSDORG00000011517	Pnldc1	99	87.220	Dipodomys_ordii
ENSECAG00000012898	PNLDC1	93	76.518	ENSETEG00000007587	PNLDC1	99	76.518	Echinops_telfairi
ENSECAG00000012898	PNLDC1	98	30.000	ENSEBUG00000008118	PNLDC1	98	30.000	Eptatretus_burgeri
ENSECAG00000012898	PNLDC1	100	89.907	ENSEASG00005019029	PNLDC1	100	89.907	Equus_asinus_asinus
ENSECAG00000012898	PNLDC1	67	81.250	ENSEEUG00000005717	-	86	81.250	Erinaceus_europaeus
ENSECAG00000012898	PNLDC1	100	93.974	ENSFCAG00000002848	PNLDC1	100	93.974	Felis_catus
ENSECAG00000012898	PNLDC1	94	59.443	ENSFALG00000012081	PNLDC1	99	59.443	Ficedula_albicollis
ENSECAG00000012898	PNLDC1	100	84.557	ENSFDAG00000021334	PNLDC1	100	84.557	Fukomys_damarensis
ENSECAG00000012898	PNLDC1	79	59.620	ENSGALG00000011624	PNLDC1	82	59.620	Gallus_gallus
ENSECAG00000012898	PNLDC1	99	66.477	ENSGAGG00000015276	PNLDC1	100	67.355	Gopherus_agassizii
ENSECAG00000012898	PNLDC1	100	88.136	ENSGGOG00000014077	PNLDC1	100	88.136	Gorilla_gorilla
ENSECAG00000012898	PNLDC1	100	85.876	ENSHGLG00000006889	PNLDC1	100	85.876	Heterocephalus_glaber_female
ENSECAG00000012898	PNLDC1	100	85.876	ENSHGLG00100018275	PNLDC1	100	85.876	Heterocephalus_glaber_male
ENSECAG00000012898	PNLDC1	99	89.773	ENSSTOG00000005595	PNLDC1	99	89.773	Ictidomys_tridecemlineatus
ENSECAG00000012898	PNLDC1	99	80.340	ENSJJAG00000009937	Pnldc1	99	80.340	Jaculus_jaculus
ENSECAG00000012898	PNLDC1	59	87.619	ENSLAFG00000030189	PNLDC1	92	87.619	Loxodonta_africana
ENSECAG00000012898	PNLDC1	100	89.077	ENSMFAG00000041296	PNLDC1	100	89.077	Macaca_fascicularis
ENSECAG00000012898	PNLDC1	100	89.077	ENSMMUG00000004181	PNLDC1	100	89.077	Macaca_mulatta
ENSECAG00000012898	PNLDC1	100	88.889	ENSMNEG00000034271	PNLDC1	100	88.889	Macaca_nemestrina
ENSECAG00000012898	PNLDC1	100	85.311	ENSMLEG00000044059	PNLDC1	100	85.311	Mandrillus_leucophaeus
ENSECAG00000012898	PNLDC1	69	32.639	ENSMZEG00005013590	parn	57	32.639	Maylandia_zebra
ENSECAG00000012898	PNLDC1	95	59.684	ENSMGAG00000012470	PNLDC1	97	59.684	Meleagris_gallopavo
ENSECAG00000012898	PNLDC1	99	68.889	ENSMAUG00000012298	Pnldc1	100	68.889	Mesocricetus_auratus
ENSECAG00000012898	PNLDC1	100	88.136	ENSMICG00000008021	PNLDC1	100	88.136	Microcebus_murinus
ENSECAG00000012898	PNLDC1	100	86.492	ENSMOCG00000014287	Pnldc1	100	86.492	Microtus_ochrogaster
ENSECAG00000012898	PNLDC1	99	77.230	ENSMODG00000007420	PNLDC1	99	77.230	Monodelphis_domestica
ENSECAG00000012898	PNLDC1	100	86.441	MGP_CAROLIEiJ_G0021045	Pnldc1	100	86.441	Mus_caroli
ENSECAG00000012898	PNLDC1	100	87.006	ENSMUSG00000073460	Pnldc1	100	90.038	Mus_musculus
ENSECAG00000012898	PNLDC1	100	86.654	MGP_PahariEiJ_G0023361	Pnldc1	100	86.654	Mus_pahari
ENSECAG00000012898	PNLDC1	100	87.194	MGP_SPRETEiJ_G0021975	Pnldc1	100	87.194	Mus_spretus
ENSECAG00000012898	PNLDC1	99	93.208	ENSMPUG00000004920	PNLDC1	99	93.208	Mustela_putorius_furo
ENSECAG00000012898	PNLDC1	100	89.266	ENSMLUG00000000747	PNLDC1	100	89.266	Myotis_lucifugus
ENSECAG00000012898	PNLDC1	100	87.382	ENSNGAG00000017714	Pnldc1	99	87.382	Nannospalax_galili
ENSECAG00000012898	PNLDC1	97	86.628	ENSNLEG00000011282	PNLDC1	99	86.628	Nomascus_leucogenys
ENSECAG00000012898	PNLDC1	60	65.312	ENSMEUG00000011926	-	64	65.312	Notamacropus_eugenii
ENSECAG00000012898	PNLDC1	54	68.750	ENSMEUG00000014042	-	100	68.750	Notamacropus_eugenii
ENSECAG00000012898	PNLDC1	79	88.636	ENSOPRG00000003813	PNLDC1	79	88.636	Ochotona_princeps
ENSECAG00000012898	PNLDC1	100	84.746	ENSODEG00000008047	PNLDC1	100	84.746	Octodon_degus
ENSECAG00000012898	PNLDC1	99	60.000	ENSOANG00000012199	PNLDC1	99	60.870	Ornithorhynchus_anatinus
ENSECAG00000012898	PNLDC1	100	87.759	ENSOCUG00000013867	PNLDC1	100	87.759	Oryctolagus_cuniculus
ENSECAG00000012898	PNLDC1	99	89.394	ENSOGAG00000007331	PNLDC1	99	89.394	Otolemur_garnettii
ENSECAG00000012898	PNLDC1	100	89.077	ENSOARG00000004585	PNLDC1	100	89.077	Ovis_aries
ENSECAG00000012898	PNLDC1	100	87.947	ENSPPAG00000026651	PNLDC1	100	87.947	Pan_paniscus
ENSECAG00000012898	PNLDC1	100	93.597	ENSPPRG00000012854	PNLDC1	100	93.597	Panthera_pardus
ENSECAG00000012898	PNLDC1	98	88.359	ENSPTIG00000011501	PNLDC1	98	88.359	Panthera_tigris_altaica
ENSECAG00000012898	PNLDC1	100	87.947	ENSPTRG00000018762	PNLDC1	100	87.947	Pan_troglodytes
ENSECAG00000012898	PNLDC1	100	89.266	ENSPANG00000022009	PNLDC1	100	89.266	Papio_anubis
ENSECAG00000012898	PNLDC1	69	34.483	ENSPKIG00000022807	parn	54	34.483	Paramormyrops_kingsleyae
ENSECAG00000012898	PNLDC1	100	87.194	ENSPEMG00000016301	Pnldc1	99	87.194	Peromyscus_maniculatus_bairdii
ENSECAG00000012898	PNLDC1	83	78.815	ENSPCIG00000023412	PNLDC1	100	78.815	Phascolarctos_cinereus
ENSECAG00000012898	PNLDC1	100	82.519	ENSPPYG00000017148	PNLDC1	100	82.519	Pongo_abelii
ENSECAG00000012898	PNLDC1	99	77.925	ENSPCAG00000014169	PNLDC1	99	77.925	Procavia_capensis
ENSECAG00000012898	PNLDC1	100	88.324	ENSPCOG00000025722	PNLDC1	100	88.324	Propithecus_coquereli
ENSECAG00000012898	PNLDC1	73	96.364	ENSPVAG00000005325	PNLDC1	73	96.364	Pteropus_vampyrus
ENSECAG00000012898	PNLDC1	100	86.441	ENSRNOG00000023140	Pnldc1	100	86.441	Rattus_norvegicus
ENSECAG00000012898	PNLDC1	100	88.701	ENSRBIG00000033806	PNLDC1	100	88.701	Rhinopithecus_bieti
ENSECAG00000012898	PNLDC1	95	88.735	ENSRROG00000043919	PNLDC1	97	88.735	Rhinopithecus_roxellana
ENSECAG00000012898	PNLDC1	100	87.759	ENSSBOG00000019135	PNLDC1	100	87.759	Saimiri_boliviensis_boliviensis
ENSECAG00000012898	PNLDC1	96	77.165	ENSSHAG00000015192	PNLDC1	97	77.165	Sarcophilus_harrisii
ENSECAG00000012898	PNLDC1	82	36.735	ENSSFOG00015014165	parn	68	36.735	Scleropages_formosus
ENSECAG00000012898	PNLDC1	54	67.832	ENSSPUG00000004627	PNLDC1	99	67.411	Sphenodon_punctatus
ENSECAG00000012898	PNLDC1	96	89.412	ENSSSCG00000004046	PNLDC1	99	89.412	Sus_scrofa
ENSECAG00000012898	PNLDC1	91	60.619	ENSTGUG00000011418	PNLDC1	99	60.619	Taeniopygia_guttata
ENSECAG00000012898	PNLDC1	96	77.843	ENSTBEG00000009131	PNLDC1	98	77.843	Tupaia_belangeri
ENSECAG00000012898	PNLDC1	73	86.528	ENSTTRG00000010409	PNLDC1	73	86.528	Tursiops_truncatus
ENSECAG00000012898	PNLDC1	99	78.333	ENSUAMG00000015783	PNLDC1	99	78.333	Ursus_americanus
ENSECAG00000012898	PNLDC1	95	83.725	ENSUMAG00000011903	PNLDC1	99	83.725	Ursus_maritimus
ENSECAG00000012898	PNLDC1	96	94.129	ENSVVUG00000006586	PNLDC1	99	93.634	Vulpes_vulpes