EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000015423 (Gene tree)
Gene ID: 100054098
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 67165 bases
Position: chr28:31590079-31657243
Accession: 21816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000025602	zf-C2H2	PF00096.26	2.1e-19	1	2
ENSECAP00000025602	zf-C2H2	PF00096.26	2.1e-19	2	2
ENSECAP00000045055	zf-C2H2	PF00096.26	2.4e-19	1	2
ENSECAP00000045055	zf-C2H2	PF00096.26	2.4e-19	2	2
ENSECAP00000013230	zf-C2H2	PF00096.26	4.8e-19	1	2
ENSECAP00000013230	zf-C2H2	PF00096.26	4.8e-19	2	2
ENSECAP00000034413	zf-C2H2	PF00096.26	1.2e-14	1	2
ENSECAP00000034413	zf-C2H2	PF00096.26	1.2e-14	2	2
ENSECAP00000025602	zf-met	PF12874.7	6.5e-05	1	1
ENSECAP00000045055	zf-met	PF12874.7	7e-05	1	1
ENSECAP00000034413	zf-met	PF12874.7	7.7e-05	1	1
ENSECAP00000013230	zf-met	PF12874.7	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000049332	-	3599	-	ENSECAP00000025602	731 (aa)	-	UPI0004BDB457
ENSECAT00000016382	-	3181	-	ENSECAP00000013230	801 (aa)	XP_023487612	F6VDL7
ENSECAT00000048991	-	2995	-	ENSECAP00000045055	739 (aa)	-	-
ENSECAT00000032654	-	2962	-	ENSECAP00000034413	728 (aa)	-	-

Gene Model

Click here to download ENSECAG00000015423's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000015423's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000015423	PRDM4	62	33.333	ENSECAG00000017225	PRDM15	61	34.298
ENSECAG00000015423	PRDM4	54	35.374	ENSECAG00000011499	PRDM10	54	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000015423	PRDM4	100	97.378	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSECAG00000015423	PRDM4	100	97.541	ENSAMEG00000016174	PRDM4	99	97.747	Ailuropoda_melanoleuca
ENSECAG00000015423	PRDM4	99	87.469	ENSAPLG00000009846	PRDM4	99	86.967	Anas_platyrhynchos
ENSECAG00000015423	PRDM4	100	97.253	ENSANAG00000024800	PRDM4	100	97.253	Aotus_nancymaae
ENSECAG00000015423	PRDM4	100	97.753	ENSBTAG00000012999	PRDM4	100	97.753	Bos_taurus
ENSECAG00000015423	PRDM4	100	96.754	ENSCJAG00000015261	PRDM4	100	96.754	Callithrix_jacchus
ENSECAG00000015423	PRDM4	100	98.002	ENSCAFG00000001788	PRDM4	100	98.002	Canis_familiaris
ENSECAG00000015423	PRDM4	100	98.002	ENSCAFG00020004916	PRDM4	100	98.002	Canis_lupus_dingo
ENSECAG00000015423	PRDM4	100	97.628	ENSCHIG00000019409	PRDM4	100	97.628	Capra_hircus
ENSECAG00000015423	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSECAG00000015423	PRDM4	99	90.613	ENSCAPG00000013937	PRDM4	99	90.613	Cavia_aperea
ENSECAG00000015423	PRDM4	99	90.062	ENSCPOG00000022385	PRDM4	100	90.062	Cavia_porcellus
ENSECAG00000015423	PRDM4	100	97.378	ENSCCAG00000036033	PRDM4	100	97.378	Cebus_capucinus
ENSECAG00000015423	PRDM4	100	97.129	ENSCATG00000044797	PRDM4	100	97.129	Cercocebus_atys
ENSECAG00000015423	PRDM4	99	92.662	ENSCLAG00000007545	PRDM4	100	92.910	Chinchilla_lanigera
ENSECAG00000015423	PRDM4	100	97.253	ENSCSAG00000002896	PRDM4	100	97.253	Chlorocebus_sabaeus
ENSECAG00000015423	PRDM4	71	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSECAG00000015423	PRDM4	99	88.833	ENSCPBG00000023187	PRDM4	100	88.331	Chrysemys_picta_bellii
ENSECAG00000015423	PRDM4	100	97.129	ENSCANG00000021804	PRDM4	100	97.129	Colobus_angolensis_palliatus
ENSECAG00000015423	PRDM4	99	93.035	ENSCGRG00001015102	-	100	92.786	Cricetulus_griseus_chok1gshd
ENSECAG00000015423	PRDM4	99	92.935	ENSCGRG00000004044	-	100	92.774	Cricetulus_griseus_crigri
ENSECAG00000015423	PRDM4	100	96.717	ENSDNOG00000032478	PRDM4	100	97.278	Dasypus_novemcinctus
ENSECAG00000015423	PRDM4	99	83.934	ENSDORG00000015081	-	100	83.464	Dipodomys_ordii
ENSECAG00000015423	PRDM4	95	45.915	ENSEBUG00000003775	prdm4	99	46.196	Eptatretus_burgeri
ENSECAG00000015423	PRDM4	99	93.544	ENSEEUG00000006569	PRDM4	99	93.475	Erinaceus_europaeus
ENSECAG00000015423	PRDM4	99	60.875	ENSELUG00000015265	prdm4	99	60.632	Esox_lucius
ENSECAG00000015423	PRDM4	100	98.252	ENSFCAG00000022478	PRDM4	100	98.252	Felis_catus
ENSECAG00000015423	PRDM4	99	87.829	ENSFALG00000013342	PRDM4	100	87.453	Ficedula_albicollis
ENSECAG00000015423	PRDM4	100	87.173	ENSGALG00000012619	PRDM4	100	86.675	Gallus_gallus
ENSECAG00000015423	PRDM4	99	88.471	ENSGAGG00000002763	PRDM4	95	87.970	Gopherus_agassizii
ENSECAG00000015423	PRDM4	100	97.127	ENSGGOG00000001244	PRDM4	99	97.250	Gorilla_gorilla
ENSECAG00000015423	PRDM4	99	94.605	ENSHGLG00000004590	PRDM4	98	94.228	Heterocephalus_glaber_female
ENSECAG00000015423	PRDM4	99	93.540	ENSHGLG00100007464	PRDM4	100	93.168	Heterocephalus_glaber_male
ENSECAG00000015423	PRDM4	99	58.974	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
ENSECAG00000015423	PRDM4	100	96.717	ENSSTOG00000016168	PRDM4	100	96.629	Ictidomys_tridecemlineatus
ENSECAG00000015423	PRDM4	95	98.137	ENSJJAG00000022448	-	93	98.137	Jaculus_jaculus
ENSECAG00000015423	PRDM4	100	73.046	ENSLACG00000007452	PRDM4	99	73.762	Latimeria_chalumnae
ENSECAG00000015423	PRDM4	79	48.529	ENSLOCG00000017092	prdm4	88	68.293	Lepisosteus_oculatus
ENSECAG00000015423	PRDM4	98	97.716	ENSLAFG00000001483	PRDM4	100	97.716	Loxodonta_africana
ENSECAG00000015423	PRDM4	100	97.378	ENSMFAG00000041862	PRDM4	100	97.378	Macaca_fascicularis
ENSECAG00000015423	PRDM4	100	97.378	ENSMMUG00000015550	PRDM4	100	97.378	Macaca_mulatta
ENSECAG00000015423	PRDM4	100	97.129	ENSMNEG00000032319	PRDM4	100	97.129	Macaca_nemestrina
ENSECAG00000015423	PRDM4	100	97.253	ENSMLEG00000039607	PRDM4	100	97.253	Mandrillus_leucophaeus
ENSECAG00000015423	PRDM4	99	80.000	ENSMGAG00000012815	PRDM4	100	79.500	Meleagris_gallopavo
ENSECAG00000015423	PRDM4	100	96.255	ENSMICG00000007807	PRDM4	100	96.255	Microcebus_murinus
ENSECAG00000015423	PRDM4	99	93.827	ENSMOCG00000000753	Prdm4	99	93.358	Microtus_ochrogaster
ENSECAG00000015423	PRDM4	99	94.650	ENSMUSG00000035529	Prdm4	100	94.354	Mus_musculus
ENSECAG00000015423	PRDM4	99	94.103	MGP_PahariEiJ_G0031398	Prdm4	100	94.155	Mus_pahari
ENSECAG00000015423	PRDM4	99	95.610	MGP_SPRETEiJ_G0016505	Prdm4	100	95.553	Mus_spretus
ENSECAG00000015423	PRDM4	97	96.045	ENSMPUG00000012238	PRDM4	99	91.895	Mustela_putorius_furo
ENSECAG00000015423	PRDM4	100	97.264	ENSMLUG00000000767	PRDM4	99	97.494	Myotis_lucifugus
ENSECAG00000015423	PRDM4	99	95.859	ENSNGAG00000018627	Prdm4	100	95.859	Nannospalax_galili
ENSECAG00000015423	PRDM4	100	97.264	ENSNLEG00000006748	PRDM4	100	97.253	Nomascus_leucogenys
ENSECAG00000015423	PRDM4	89	90.610	ENSMEUG00000004495	PRDM4	89	90.610	Notamacropus_eugenii
ENSECAG00000015423	PRDM4	88	96.131	ENSOPRG00000010192	PRDM4	89	96.131	Ochotona_princeps
ENSECAG00000015423	PRDM4	99	90.375	ENSODEG00000014750	PRDM4	99	90.250	Octodon_degus
ENSECAG00000015423	PRDM4	100	91.635	ENSOANG00000005526	PRDM4	100	91.635	Ornithorhynchus_anatinus
ENSECAG00000015423	PRDM4	95	98.268	ENSOCUG00000012859	PRDM4	96	97.854	Oryctolagus_cuniculus
ENSECAG00000015423	PRDM4	100	97.674	ENSOGAG00000011945	PRDM4	100	97.742	Otolemur_garnettii
ENSECAG00000015423	PRDM4	100	97.753	ENSOARG00000017955	PRDM4	100	97.753	Ovis_aries
ENSECAG00000015423	PRDM4	100	97.378	ENSPPAG00000038438	PRDM4	100	97.378	Pan_paniscus
ENSECAG00000015423	PRDM4	100	98.252	ENSPPRG00000004144	PRDM4	100	98.252	Panthera_pardus
ENSECAG00000015423	PRDM4	100	98.252	ENSPTIG00000005847	PRDM4	100	98.252	Panthera_tigris_altaica
ENSECAG00000015423	PRDM4	100	97.378	ENSPTRG00000005400	PRDM4	100	97.378	Pan_troglodytes
ENSECAG00000015423	PRDM4	100	97.378	ENSPANG00000022084	PRDM4	100	97.378	Papio_anubis
ENSECAG00000015423	PRDM4	99	60.642	ENSPKIG00000000875	prdm4	99	60.761	Paramormyrops_kingsleyae
ENSECAG00000015423	PRDM4	91	81.749	ENSPSIG00000012066	PRDM4	100	81.749	Pelodiscus_sinensis
ENSECAG00000015423	PRDM4	99	95.610	ENSPEMG00000014598	Prdm4	100	95.483	Peromyscus_maniculatus_bairdii
ENSECAG00000015423	PRDM4	100	89.925	ENSPCIG00000009471	PRDM4	100	89.925	Phascolarctos_cinereus
ENSECAG00000015423	PRDM4	100	97.253	ENSPPYG00000004913	PRDM4	100	97.253	Pongo_abelii
ENSECAG00000015423	PRDM4	90	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSECAG00000015423	PRDM4	100	96.255	ENSPCOG00000021060	PRDM4	100	96.255	Propithecus_coquereli
ENSECAG00000015423	PRDM4	100	97.506	ENSPVAG00000001596	PRDM4	100	97.506	Pteropus_vampyrus
ENSECAG00000015423	PRDM4	99	94.384	ENSRNOG00000004962	Prdm4	100	93.985	Rattus_norvegicus
ENSECAG00000015423	PRDM4	100	97.129	ENSRBIG00000035488	PRDM4	100	97.129	Rhinopithecus_bieti
ENSECAG00000015423	PRDM4	100	97.253	ENSRROG00000012779	PRDM4	100	97.253	Rhinopithecus_roxellana
ENSECAG00000015423	PRDM4	100	97.253	ENSSBOG00000000403	PRDM4	100	97.253	Saimiri_boliviensis_boliviensis
ENSECAG00000015423	PRDM4	99	63.916	ENSSFOG00015023358	prdm4	99	63.916	Scleropages_formosus
ENSECAG00000015423	PRDM4	100	98.002	ENSSSCG00000000160	PRDM4	100	98.002	Sus_scrofa
ENSECAG00000015423	PRDM4	99	87.970	ENSTGUG00000010962	-	99	87.594	Taeniopygia_guttata
ENSECAG00000015423	PRDM4	80	90.614	ENSTBEG00000001732	PRDM4	84	90.614	Tupaia_belangeri
ENSECAG00000015423	PRDM4	100	97.753	ENSTTRG00000011056	PRDM4	100	97.753	Tursiops_truncatus
ENSECAG00000015423	PRDM4	100	98.127	ENSUAMG00000022796	PRDM4	100	98.127	Ursus_americanus
ENSECAG00000015423	PRDM4	100	98.127	ENSUMAG00000017231	PRDM4	100	98.127	Ursus_maritimus
ENSECAG00000015423	PRDM4	100	97.811	ENSVPAG00000002215	PRDM4	100	97.992	Vicugna_pacos
ENSECAG00000015423	PRDM4	100	98.002	ENSVVUG00000023397	PRDM4	100	98.002	Vulpes_vulpes