EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000015662 (Gene tree)
Gene ID: 100072308
Gene Symbol: CMSS1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 30834 bases
Position: chr19:57897040-57927873
Accession: 57081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000032894	CMS1	PF14617.6	3e-30	1	1
ENSECAP00000013303	CMS1	PF14617.6	5.4e-30	1	1
ENSECAP00000037888	CMS1	PF14617.6	5.7e-30	1	1
ENSECAP00000033929	CMS1	PF14617.6	6.8e-30	1	1
ENSECAP00000032894	DEAD	PF00270.29	3.8e-06	1	1
ENSECAP00000013303	DEAD	PF00270.29	3.9e-06	1	1
ENSECAP00000033929	DEAD	PF00270.29	4.3e-06	1	1
ENSECAP00000037888	DEAD	PF00270.29	6.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000035125	-	864	-	ENSECAP00000037888	287 (aa)	-	-
ENSECAT00000047422	-	813	-	ENSECAP00000033929	270 (aa)	-	-
ENSECAT00000044403	-	684	-	ENSECAP00000032894	227 (aa)	-	-
ENSECAT00000016469	-	789	-	ENSECAP00000013303	262 (aa)	-	F6U760

Gene Model

Click here to download ENSECAG00000015662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000015662's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000015662	CMSS1	99	91.593	ENSG00000184220	CMSS1	99	92.593	Homo_sapiens
ENSECAG00000015662	CMSS1	89	63.366	ENSAPOG00000010604	cmss1	81	63.000	Acanthochromis_polyacanthus
ENSECAG00000015662	CMSS1	99	91.189	ENSAMEG00000004092	CMSS1	99	89.147	Ailuropoda_melanoleuca
ENSECAG00000015662	CMSS1	89	52.475	ENSACIG00000021854	cmss1	91	48.760	Amphilophus_citrinellus
ENSECAG00000015662	CMSS1	89	63.366	ENSAOCG00000013361	cmss1	69	63.000	Amphiprion_ocellaris
ENSECAG00000015662	CMSS1	89	63.366	ENSAPEG00000005829	cmss1	69	63.000	Amphiprion_percula
ENSECAG00000015662	CMSS1	99	60.088	ENSATEG00000008209	cmss1	83	58.091	Anabas_testudineus
ENSECAG00000015662	CMSS1	99	68.722	ENSAPLG00000010542	CMSS1	100	69.130	Anas_platyrhynchos
ENSECAG00000015662	CMSS1	99	60.370	ENSACAG00000011065	CMSS1	99	60.370	Anolis_carolinensis
ENSECAG00000015662	CMSS1	99	90.708	ENSANAG00000023565	CMSS1	99	88.462	Aotus_nancymaae
ENSECAG00000015662	CMSS1	89	59.901	ENSACLG00000027294	cmss1	69	59.500	Astatotilapia_calliptera
ENSECAG00000015662	CMSS1	88	56.500	ENSAMXG00000002046	cmss1	82	53.689	Astyanax_mexicanus
ENSECAG00000015662	CMSS1	99	89.823	ENSBTAG00000013663	CMSS1	93	87.984	Bos_taurus
ENSECAG00000015662	CMSS1	99	90.265	ENSCJAG00000000610	CMSS1	98	87.984	Callithrix_jacchus
ENSECAG00000015662	CMSS1	99	91.593	ENSCAFG00000009230	CMSS1	94	89.961	Canis_familiaris
ENSECAG00000015662	CMSS1	99	91.593	ENSCAFG00020009464	-	94	89.883	Canis_lupus_dingo
ENSECAG00000015662	CMSS1	90	91.667	ENSCAFG00020024156	-	73	84.549	Canis_lupus_dingo
ENSECAG00000015662	CMSS1	99	90.265	ENSCHIG00000013003	CMSS1	94	88.031	Capra_hircus
ENSECAG00000015662	CMSS1	99	88.496	ENSTSYG00000009266	CMSS1	98	87.891	Carlito_syrichta
ENSECAG00000015662	CMSS1	98	71.616	ENSCAPG00000013584	CMSS1	100	72.052	Cavia_aperea
ENSECAG00000015662	CMSS1	99	89.823	ENSCPOG00000014680	CMSS1	95	85.283	Cavia_porcellus
ENSECAG00000015662	CMSS1	99	91.150	ENSCCAG00000034685	CMSS1	98	89.147	Cebus_capucinus
ENSECAG00000015662	CMSS1	99	92.035	ENSCATG00000031980	CMSS1	98	90.272	Cercocebus_atys
ENSECAG00000015662	CMSS1	99	92.035	ENSCLAG00000011241	CMSS1	98	92.576	Chinchilla_lanigera
ENSECAG00000015662	CMSS1	99	92.035	ENSCSAG00000006024	CMSS1	99	90.984	Chlorocebus_sabaeus
ENSECAG00000015662	CMSS1	99	67.816	ENSCHOG00000012098	CMSS1	95	67.816	Choloepus_hoffmanni
ENSECAG00000015662	CMSS1	86	39.000	ENSCING00000014848	-	100	40.107	Ciona_intestinalis
ENSECAG00000015662	CMSS1	55	39.683	ENSCSAVG00000002309	-	99	39.683	Ciona_savignyi
ENSECAG00000015662	CMSS1	99	91.593	ENSCANG00000031337	CMSS1	98	89.883	Colobus_angolensis_palliatus
ENSECAG00000015662	CMSS1	100	81.938	ENSCGRG00001014305	Cmss1	92	79.297	Cricetulus_griseus_chok1gshd
ENSECAG00000015662	CMSS1	100	82.379	ENSCGRG00000006722	Cmss1	99	79.688	Cricetulus_griseus_crigri
ENSECAG00000015662	CMSS1	89	61.386	ENSCSEG00000004958	cmss1	68	61.000	Cynoglossus_semilaevis
ENSECAG00000015662	CMSS1	89	59.901	ENSCVAG00000005039	cmss1	83	56.017	Cyprinodon_variegatus
ENSECAG00000015662	CMSS1	99	53.247	ENSDARG00000112579	cmss1	79	52.586	Danio_rerio
ENSECAG00000015662	CMSS1	99	88.053	ENSDNOG00000040418	CMSS1	93	83.270	Dasypus_novemcinctus
ENSECAG00000015662	CMSS1	99	89.823	ENSDORG00000010461	Cmss1	95	85.714	Dipodomys_ordii
ENSECAG00000015662	CMSS1	58	49.242	ENSEBUG00000002156	-	96	49.242	Eptatretus_burgeri
ENSECAG00000015662	CMSS1	99	98.230	ENSEASG00005010966	CMSS1	99	98.174	Equus_asinus_asinus
ENSECAG00000015662	CMSS1	99	59.735	ENSEEUG00000007624	-	82	60.088	Erinaceus_europaeus
ENSECAG00000015662	CMSS1	89	61.386	ENSELUG00000019459	cmss1	80	56.250	Esox_lucius
ENSECAG00000015662	CMSS1	99	93.363	ENSFCAG00000044577	CMSS1	95	90.602	Felis_catus
ENSECAG00000015662	CMSS1	99	64.602	ENSFALG00000005816	CMSS1	100	63.180	Ficedula_albicollis
ENSECAG00000015662	CMSS1	99	89.823	ENSFDAG00000012577	CMSS1	100	90.351	Fukomys_damarensis
ENSECAG00000015662	CMSS1	99	59.130	ENSFHEG00000012008	cmss1	96	58.798	Fundulus_heteroclitus
ENSECAG00000015662	CMSS1	89	60.396	ENSGMOG00000016729	cmss1	72	60.000	Gadus_morhua
ENSECAG00000015662	CMSS1	99	68.584	ENSGALG00000015267	CMSS1	100	63.498	Gallus_gallus
ENSECAG00000015662	CMSS1	91	62.319	ENSGAFG00000021217	cmss1	76	62.000	Gambusia_affinis
ENSECAG00000015662	CMSS1	89	54.950	ENSGACG00000002798	cmss1	97	47.037	Gasterosteus_aculeatus
ENSECAG00000015662	CMSS1	99	69.469	ENSGAGG00000019861	CMSS1	92	68.776	Gopherus_agassizii
ENSECAG00000015662	CMSS1	99	92.035	ENSGGOG00000014125	CMSS1	98	89.883	Gorilla_gorilla
ENSECAG00000015662	CMSS1	89	59.901	ENSHBUG00000008431	cmss1	98	50.000	Haplochromis_burtoni
ENSECAG00000015662	CMSS1	99	90.708	ENSHGLG00000019481	CMSS1	99	86.400	Heterocephalus_glaber_female
ENSECAG00000015662	CMSS1	99	90.708	ENSHGLG00100010314	CMSS1	100	85.992	Heterocephalus_glaber_male
ENSECAG00000015662	CMSS1	96	63.014	ENSHCOG00000003222	cmss1	74	63.014	Hippocampus_comes
ENSECAG00000015662	CMSS1	97	54.751	ENSIPUG00000011591	cmss1	76	55.000	Ictalurus_punctatus
ENSECAG00000015662	CMSS1	99	91.150	ENSSTOG00000019366	CMSS1	95	88.302	Ictidomys_tridecemlineatus
ENSECAG00000015662	CMSS1	99	86.726	ENSJJAG00000014894	Cmss1	89	88.500	Jaculus_jaculus
ENSECAG00000015662	CMSS1	89	52.475	ENSKMAG00000002390	cmss1	80	52.000	Kryptolebias_marmoratus
ENSECAG00000015662	CMSS1	97	51.250	ENSLBEG00000006298	cmss1	82	56.219	Labrus_bergylta
ENSECAG00000015662	CMSS1	99	62.719	ENSLACG00000009293	CMSS1	100	63.043	Latimeria_chalumnae
ENSECAG00000015662	CMSS1	99	55.947	ENSLOCG00000009391	cmss1	86	54.286	Lepisosteus_oculatus
ENSECAG00000015662	CMSS1	99	87.611	ENSLAFG00000017509	CMSS1	100	88.158	Loxodonta_africana
ENSECAG00000015662	CMSS1	99	92.478	ENSMFAG00000045006	CMSS1	98	90.661	Macaca_fascicularis
ENSECAG00000015662	CMSS1	99	92.035	ENSMMUG00000002939	CMSS1	98	91.818	Macaca_mulatta
ENSECAG00000015662	CMSS1	99	92.035	ENSMNEG00000031315	CMSS1	98	90.272	Macaca_nemestrina
ENSECAG00000015662	CMSS1	99	91.593	ENSMLEG00000033660	CMSS1	98	89.883	Mandrillus_leucophaeus
ENSECAG00000015662	CMSS1	89	61.386	ENSMAMG00000017176	cmss1	83	55.187	Mastacembelus_armatus
ENSECAG00000015662	CMSS1	89	59.901	ENSMZEG00005021886	cmss1	69	59.500	Maylandia_zebra
ENSECAG00000015662	CMSS1	99	67.699	ENSMGAG00000014360	CMSS1	100	67.982	Meleagris_gallopavo
ENSECAG00000015662	CMSS1	100	55.947	ENSMAUG00000020609	Cmss1	93	57.795	Mesocricetus_auratus
ENSECAG00000015662	CMSS1	99	92.478	ENSMICG00000048977	CMSS1	98	89.453	Microcebus_murinus
ENSECAG00000015662	CMSS1	99	81.416	ENSMOCG00000021937	Cmss1	95	75.849	Microtus_ochrogaster
ENSECAG00000015662	CMSS1	89	60.891	ENSMMOG00000019794	cmss1	83	60.500	Mola_mola
ENSECAG00000015662	CMSS1	99	77.434	ENSMODG00000002275	CMSS1	100	71.698	Monodelphis_domestica
ENSECAG00000015662	CMSS1	89	62.871	ENSMALG00000004250	cmss1	69	62.500	Monopterus_albus
ENSECAG00000015662	CMSS1	99	81.938	MGP_CAROLIEiJ_G0020824	Cmss1	95	77.820	Mus_caroli
ENSECAG00000015662	CMSS1	99	83.260	ENSMUSG00000022748	Cmss1	95	78.947	Mus_musculus
ENSECAG00000015662	CMSS1	99	82.819	MGP_PahariEiJ_G0016524	Cmss1	95	77.068	Mus_pahari
ENSECAG00000015662	CMSS1	99	83.260	MGP_SPRETEiJ_G0021724	Cmss1	95	78.571	Mus_spretus
ENSECAG00000015662	CMSS1	99	93.333	ENSMPUG00000011324	CMSS1	99	90.698	Mustela_putorius_furo
ENSECAG00000015662	CMSS1	99	90.351	ENSMLUG00000001131	CMSS1	99	87.405	Myotis_lucifugus
ENSECAG00000015662	CMSS1	99	86.283	ENSNGAG00000020316	Cmss1	93	83.012	Nannospalax_galili
ENSECAG00000015662	CMSS1	89	59.406	ENSNBRG00000003095	cmss1	83	53.909	Neolamprologus_brichardi
ENSECAG00000015662	CMSS1	99	93.363	ENSNLEG00000034172	CMSS1	98	91.051	Nomascus_leucogenys
ENSECAG00000015662	CMSS1	99	65.044	ENSMEUG00000014505	CMSS1	100	65.789	Notamacropus_eugenii
ENSECAG00000015662	CMSS1	99	90.265	ENSOPRG00000002986	CMSS1	95	87.547	Ochotona_princeps
ENSECAG00000015662	CMSS1	99	76.991	ENSODEG00000001853	-	95	75.000	Octodon_degus
ENSECAG00000015662	CMSS1	99	86.726	ENSODEG00000003558	-	95	79.554	Octodon_degus
ENSECAG00000015662	CMSS1	99	88.496	ENSODEG00000005226	-	92	85.992	Octodon_degus
ENSECAG00000015662	CMSS1	96	79.817	ENSODEG00000009446	-	95	71.094	Octodon_degus
ENSECAG00000015662	CMSS1	89	59.901	ENSONIG00000006678	cmss1	77	59.500	Oreochromis_niloticus
ENSECAG00000015662	CMSS1	99	72.566	ENSOANG00000007529	CMSS1	100	72.103	Ornithorhynchus_anatinus
ENSECAG00000015662	CMSS1	99	89.381	ENSOCUG00000025366	CMSS1	94	88.417	Oryctolagus_cuniculus
ENSECAG00000015662	CMSS1	89	62.376	ENSORLG00000020340	cmss1	81	56.327	Oryzias_latipes
ENSECAG00000015662	CMSS1	95	55.556	ENSORLG00020012235	cmss1	85	56.000	Oryzias_latipes_hni
ENSECAG00000015662	CMSS1	89	55.446	ENSORLG00015015551	cmss1	75	55.000	Oryzias_latipes_hsok
ENSECAG00000015662	CMSS1	89	62.871	ENSOMEG00000012555	cmss1	69	62.500	Oryzias_melastigma
ENSECAG00000015662	CMSS1	99	90.708	ENSOGAG00000002045	CMSS1	100	91.228	Otolemur_garnettii
ENSECAG00000015662	CMSS1	99	90.308	ENSOARG00000017899	CMSS1	89	88.417	Ovis_aries
ENSECAG00000015662	CMSS1	99	92.035	ENSPPAG00000038515	CMSS1	94	89.883	Pan_paniscus
ENSECAG00000015662	CMSS1	99	92.920	ENSPPRG00000016767	CMSS1	95	90.226	Panthera_pardus
ENSECAG00000015662	CMSS1	99	92.478	ENSPTIG00000018274	CMSS1	95	89.474	Panthera_tigris_altaica
ENSECAG00000015662	CMSS1	99	91.593	ENSPTRG00000015157	CMSS1	99	89.754	Pan_troglodytes
ENSECAG00000015662	CMSS1	99	92.035	ENSPANG00000019980	CMSS1	99	87.160	Papio_anubis
ENSECAG00000015662	CMSS1	99	59.565	ENSPKIG00000012609	cmss1	95	53.480	Paramormyrops_kingsleyae
ENSECAG00000015662	CMSS1	99	70.354	ENSPSIG00000003849	CMSS1	100	70.742	Pelodiscus_sinensis
ENSECAG00000015662	CMSS1	89	60.099	ENSPMGG00000010286	cmss1	86	59.701	Periophthalmus_magnuspinnatus
ENSECAG00000015662	CMSS1	99	83.186	ENSPEMG00000016384	Cmss1	95	78.277	Peromyscus_maniculatus_bairdii
ENSECAG00000015662	CMSS1	90	50.490	ENSPMAG00000001146	cmss1	98	50.500	Petromyzon_marinus
ENSECAG00000015662	CMSS1	99	76.106	ENSPCIG00000015656	CMSS1	100	70.677	Phascolarctos_cinereus
ENSECAG00000015662	CMSS1	89	61.881	ENSPFOG00000016849	cmss1	70	61.500	Poecilia_formosa
ENSECAG00000015662	CMSS1	89	61.386	ENSPLAG00000008323	cmss1	70	61.000	Poecilia_latipinna
ENSECAG00000015662	CMSS1	89	61.881	ENSPMEG00000021020	cmss1	69	61.500	Poecilia_mexicana
ENSECAG00000015662	CMSS1	89	61.386	ENSPREG00000007618	cmss1	96	51.056	Poecilia_reticulata
ENSECAG00000015662	CMSS1	99	91.150	ENSPPYG00000013606	CMSS1	99	85.978	Pongo_abelii
ENSECAG00000015662	CMSS1	99	92.035	ENSPCOG00000020035	CMSS1	98	89.062	Propithecus_coquereli
ENSECAG00000015662	CMSS1	99	76.549	ENSPVAG00000017031	CMSS1	94	75.479	Pteropus_vampyrus
ENSECAG00000015662	CMSS1	78	61.932	ENSPNYG00000013428	cmss1	64	61.494	Pundamilia_nyererei
ENSECAG00000015662	CMSS1	99	52.174	ENSPNAG00000007912	cmss1	94	49.091	Pygocentrus_nattereri
ENSECAG00000015662	CMSS1	99	81.938	ENSRNOG00000027888	Cmss1	97	79.447	Rattus_norvegicus
ENSECAG00000015662	CMSS1	99	92.478	ENSRBIG00000037931	CMSS1	98	90.272	Rhinopithecus_bieti
ENSECAG00000015662	CMSS1	99	92.478	ENSRROG00000042910	CMSS1	98	90.272	Rhinopithecus_roxellana
ENSECAG00000015662	CMSS1	99	90.265	ENSSBOG00000030980	CMSS1	98	88.760	Saimiri_boliviensis_boliviensis
ENSECAG00000015662	CMSS1	99	76.991	ENSSHAG00000009321	CMSS1	99	72.222	Sarcophilus_harrisii
ENSECAG00000015662	CMSS1	99	60.000	ENSSFOG00015001509	cmss1	82	58.824	Scleropages_formosus
ENSECAG00000015662	CMSS1	97	60.619	ENSSMAG00000001653	cmss1	69	62.000	Scophthalmus_maximus
ENSECAG00000015662	CMSS1	99	58.079	ENSSDUG00000007719	cmss1	93	53.358	Seriola_dumerili
ENSECAG00000015662	CMSS1	91	62.319	ENSSLDG00000012300	cmss1	90	51.142	Seriola_lalandi_dorsalis
ENSECAG00000015662	CMSS1	99	73.894	ENSSARG00000003584	CMSS1	92	72.763	Sorex_araneus
ENSECAG00000015662	CMSS1	99	67.699	ENSSPUG00000003865	CMSS1	100	68.142	Sphenodon_punctatus
ENSECAG00000015662	CMSS1	91	62.319	ENSSPAG00000019182	cmss1	84	52.000	Stegastes_partitus
ENSECAG00000015662	CMSS1	99	91.593	ENSSSCG00000011970	CMSS1	94	88.889	Sus_scrofa
ENSECAG00000015662	CMSS1	99	64.602	ENSTGUG00000013635	CMSS1	100	65.066	Taeniopygia_guttata
ENSECAG00000015662	CMSS1	89	60.891	ENSTRUG00000015265	cmss1	71	60.500	Takifugu_rubripes
ENSECAG00000015662	CMSS1	89	54.455	ENSTNIG00000002880	cmss1	72	54.000	Tetraodon_nigroviridis
ENSECAG00000015662	CMSS1	99	68.142	ENSTBEG00000016722	CMSS1	81	68.421	Tupaia_belangeri
ENSECAG00000015662	CMSS1	99	88.496	ENSTTRG00000001562	CMSS1	95	85.714	Tursiops_truncatus
ENSECAG00000015662	CMSS1	99	92.478	ENSUAMG00000024209	CMSS1	100	92.825	Ursus_americanus
ENSECAG00000015662	CMSS1	99	92.478	ENSUMAG00000001983	CMSS1	100	89.961	Ursus_maritimus
ENSECAG00000015662	CMSS1	99	74.779	ENSVPAG00000000263	CMSS1	82	75.439	Vicugna_pacos
ENSECAG00000015662	CMSS1	99	91.150	ENSVVUG00000021647	-	100	90.244	Vulpes_vulpes
ENSECAG00000015662	CMSS1	96	91.705	ENSVVUG00000007776	-	89	89.381	Vulpes_vulpes
ENSECAG00000015662	CMSS1	97	62.613	ENSXETG00000011858	cmss1	83	60.426	Xenopus_tropicalis
ENSECAG00000015662	CMSS1	92	61.538	ENSXCOG00000018724	cmss1	68	61.500	Xiphophorus_couchianus
ENSECAG00000015662	CMSS1	92	61.538	ENSXMAG00000011243	cmss1	75	61.500	Xiphophorus_maculatus