EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000016617 (Gene tree)
Gene ID: 100063716
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 18812 bases
Position: chr13:6647653-6666464
Accession: 100063716
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000014360	PPR	PF01535.20	2.7e-15	1	1
ENSECAP00000031312	PPR	PF01535.20	3.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000062233	-	3155	-	ENSECAP00000031312	710 (aa)	XP_005598573	UPI0001560EE8
ENSECAT00000017663	-	2089	-	ENSECAP00000014360	688 (aa)	XP_014585284	F6YHC6

Gene Model

Click here to download ENSECAG00000016617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000016617's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000016617	-	100	79.073	ENSG00000106246	PTCD1	100	79.213	Homo_sapiens
ENSECAG00000016617	-	100	79.073	ENSG00000248919	ATP5MF-PTCD1	93	79.213	Homo_sapiens
ENSECAG00000016617	-	89	46.935	ENSAPOG00000010679	ptcd1	91	46.129	Acanthochromis_polyacanthus
ENSECAG00000016617	-	100	85.775	ENSAMEG00000006224	-	93	84.789	Ailuropoda_melanoleuca
ENSECAG00000016617	-	89	49.530	ENSACIG00000017861	ptcd1	94	47.982	Amphilophus_citrinellus
ENSECAG00000016617	-	92	46.960	ENSAOCG00000020741	-	88	47.141	Amphiprion_ocellaris
ENSECAG00000016617	-	91	46.276	ENSAOCG00000022617	ptcd1	91	45.597	Amphiprion_ocellaris
ENSECAG00000016617	-	90	47.344	ENSAPEG00000022632	ptcd1	88	46.739	Amphiprion_percula
ENSECAG00000016617	-	87	49.597	ENSATEG00000007016	ptcd1	84	48.548	Anabas_testudineus
ENSECAG00000016617	-	84	61.564	ENSAPLG00000006862	-	93	61.231	Anas_platyrhynchos
ENSECAG00000016617	-	99	55.633	ENSACAG00000012871	-	93	55.216	Anolis_carolinensis
ENSECAG00000016617	-	98	79.310	ENSANAG00000035790	-	100	79.454	Aotus_nancymaae
ENSECAG00000016617	-	88	46.288	ENSACLG00000002824	ptcd1	80	49.500	Astatotilapia_calliptera
ENSECAG00000016617	-	86	48.270	ENSAMXG00000037292	ptcd1	88	47.874	Astyanax_mexicanus
ENSECAG00000016617	-	100	84.507	ENSBTAG00000020440	-	87	84.507	Bos_taurus
ENSECAG00000016617	-	100	79.775	ENSCJAG00000015815	-	100	79.916	Callithrix_jacchus
ENSECAG00000016617	-	100	85.070	ENSCAFG00000015055	-	93	84.085	Canis_familiaris
ENSECAG00000016617	-	100	85.070	ENSCAFG00020014480	-	93	84.085	Canis_lupus_dingo
ENSECAG00000016617	-	100	83.803	ENSCHIG00000027000	-	99	83.803	Capra_hircus
ENSECAG00000016617	-	100	82.254	ENSTSYG00000029495	-	100	82.254	Carlito_syrichta
ENSECAG00000016617	-	93	79.939	ENSCAPG00000014660	-	100	79.939	Cavia_aperea
ENSECAG00000016617	-	100	78.873	ENSCPOG00000001780	-	100	78.873	Cavia_porcellus
ENSECAG00000016617	-	100	78.541	ENSCCAG00000034025	-	100	78.682	Cebus_capucinus
ENSECAG00000016617	-	100	78.682	ENSCATG00000040859	-	100	79.243	Cercocebus_atys
ENSECAG00000016617	-	98	80.918	ENSCLAG00000006354	-	100	80.282	Chinchilla_lanigera
ENSECAG00000016617	-	94	78.407	ENSCSAG00000017794	-	95	79.020	Chlorocebus_sabaeus
ENSECAG00000016617	-	88	61.702	ENSCPBG00000020866	-	85	62.461	Chrysemys_picta_bellii
ENSECAG00000016617	-	82	30.354	ENSCING00000007717	-	91	30.357	Ciona_intestinalis
ENSECAG00000016617	-	100	78.200	ENSCANG00000023441	-	100	78.762	Colobus_angolensis_palliatus
ENSECAG00000016617	-	100	76.124	ENSCGRG00001023686	Ptcd1	100	76.124	Cricetulus_griseus_chok1gshd
ENSECAG00000016617	-	99	76.305	ENSCGRG00000015031	Ptcd1	100	76.305	Cricetulus_griseus_crigri
ENSECAG00000016617	-	84	47.264	ENSCSEG00000002378	ptcd1	83	46.569	Cynoglossus_semilaevis
ENSECAG00000016617	-	83	49.666	ENSCVAG00000015826	ptcd1	81	49.408	Cyprinodon_variegatus
ENSECAG00000016617	-	85	48.680	ENSCVAG00000003621	ptcd1	88	48.590	Cyprinodon_variegatus
ENSECAG00000016617	-	86	49.919	ENSDARG00000076176	ptcd1	88	49.431	Danio_rerio
ENSECAG00000016617	-	100	80.845	ENSDNOG00000009957	-	100	81.127	Dasypus_novemcinctus
ENSECAG00000016617	-	98	78.049	ENSDORG00000000740	Ptcd1	99	78.049	Dipodomys_ordii
ENSECAG00000016617	-	86	41.317	ENSEBUG00000014515	ptcd1	98	41.969	Eptatretus_burgeri
ENSECAG00000016617	-	100	98.592	ENSEASG00005002480	-	100	98.592	Equus_asinus_asinus
ENSECAG00000016617	-	83	48.325	ENSELUG00000016517	ptcd1	82	48.480	Esox_lucius
ENSECAG00000016617	-	100	86.056	ENSFCAG00000015069	-	100	86.056	Felis_catus
ENSECAG00000016617	-	97	55.556	ENSFALG00000013803	-	97	56.276	Ficedula_albicollis
ENSECAG00000016617	-	100	78.873	ENSFDAG00000006393	-	100	78.451	Fukomys_damarensis
ENSECAG00000016617	-	75	48.704	ENSFHEG00000012491	ptcd1	88	48.529	Fundulus_heteroclitus
ENSECAG00000016617	-	82	48.805	ENSGMOG00000007639	ptcd1	91	48.034	Gadus_morhua
ENSECAG00000016617	-	86	59.370	ENSGALG00000004711	-	99	55.230	Gallus_gallus
ENSECAG00000016617	-	84	48.852	ENSGAFG00000013175	ptcd1	82	48.414	Gambusia_affinis
ENSECAG00000016617	-	85	50.165	ENSGACG00000016607	ptcd1	91	49.423	Gasterosteus_aculeatus
ENSECAG00000016617	-	84	61.092	ENSGAGG00000021832	-	85	59.864	Gopherus_agassizii
ENSECAG00000016617	-	99	78.762	ENSGGOG00000015123	-	99	78.903	Gorilla_gorilla
ENSECAG00000016617	-	83	51.007	ENSHBUG00000018275	ptcd1	80	50.588	Haplochromis_burtoni
ENSECAG00000016617	-	100	79.044	ENSHGLG00000017621	-	100	79.044	Heterocephalus_glaber_female
ENSECAG00000016617	-	100	79.044	ENSHGLG00100007218	-	100	79.044	Heterocephalus_glaber_male
ENSECAG00000016617	-	83	48.469	ENSHCOG00000010784	ptcd1	82	47.782	Hippocampus_comes
ENSECAG00000016617	-	100	80.563	ENSSTOG00000001682	-	100	80.141	Ictidomys_tridecemlineatus
ENSECAG00000016617	-	100	75.809	ENSJJAG00000000319	Ptcd1	100	75.387	Jaculus_jaculus
ENSECAG00000016617	-	90	47.352	ENSKMAG00000008708	ptcd1	88	47.352	Kryptolebias_marmoratus
ENSECAG00000016617	-	89	46.552	ENSLBEG00000008061	ptcd1	86	46.095	Labrus_bergylta
ENSECAG00000016617	-	88	57.937	ENSLACG00000011172	ptcd1	85	58.170	Latimeria_chalumnae
ENSECAG00000016617	-	93	53.085	ENSLOCG00000004833	ptcd1	97	54.386	Lepisosteus_oculatus
ENSECAG00000016617	-	100	76.934	ENSLAFG00000002588	-	100	76.934	Loxodonta_africana
ENSECAG00000016617	-	100	78.401	ENSMFAG00000041324	-	100	78.962	Macaca_fascicularis
ENSECAG00000016617	-	100	78.261	ENSMMUG00000030408	-	100	78.822	Macaca_mulatta
ENSECAG00000016617	-	100	78.401	ENSMNEG00000043786	-	100	78.962	Macaca_nemestrina
ENSECAG00000016617	-	100	76.056	ENSMLEG00000031179	-	100	61.560	Mandrillus_leucophaeus
ENSECAG00000016617	-	93	48.286	ENSMAMG00000007623	ptcd1	89	47.690	Mastacembelus_armatus
ENSECAG00000016617	-	88	46.288	ENSMZEG00005012722	ptcd1	80	49.500	Maylandia_zebra
ENSECAG00000016617	-	94	57.396	ENSMGAG00000004211	-	89	56.953	Meleagris_gallopavo
ENSECAG00000016617	-	100	81.690	ENSMICG00000017428	-	100	81.690	Microcebus_murinus
ENSECAG00000016617	-	88	47.302	ENSMMOG00000020243	ptcd1	94	46.299	Mola_mola
ENSECAG00000016617	-	97	61.096	ENSMODG00000001350	-	98	60.685	Monodelphis_domestica
ENSECAG00000016617	-	84	49.507	ENSMALG00000018442	ptcd1	81	49.342	Monopterus_albus
ENSECAG00000016617	-	99	77.825	MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.825	Mus_caroli
ENSECAG00000016617	-	99	77.542	ENSMUSG00000029624	Ptcd1	99	77.542	Mus_musculus
ENSECAG00000016617	-	100	77.637	MGP_PahariEiJ_G0024580	Ptcd1	100	77.215	Mus_pahari
ENSECAG00000016617	-	99	77.966	MGP_SPRETEiJ_G0029012	Ptcd1	99	77.966	Mus_spretus
ENSECAG00000016617	-	100	84.930	ENSMPUG00000016518	-	100	84.930	Mustela_putorius_furo
ENSECAG00000016617	-	100	87.746	ENSMLUG00000010994	-	94	88.169	Myotis_lucifugus
ENSECAG00000016617	-	86	49.919	ENSNBRG00000010079	ptcd1	86	49.351	Neolamprologus_brichardi
ENSECAG00000016617	-	83	82.033	ENSNLEG00000011060	-	99	82.033	Nomascus_leucogenys
ENSECAG00000016617	-	97	64.194	ENSMEUG00000006930	-	99	64.051	Notamacropus_eugenii
ENSECAG00000016617	-	90	79.302	ENSOPRG00000013647	-	90	78.837	Ochotona_princeps
ENSECAG00000016617	-	83	48.918	ENSONIG00000003168	ptcd1	95	48.333	Oreochromis_niloticus
ENSECAG00000016617	-	91	56.280	ENSOANG00000007728	-	80	55.272	Ornithorhynchus_anatinus
ENSECAG00000016617	-	99	77.997	ENSOCUG00000010584	-	98	77.997	Oryctolagus_cuniculus
ENSECAG00000016617	-	87	48.392	ENSORLG00000009275	ptcd1	87	47.923	Oryzias_latipes
ENSECAG00000016617	-	87	47.943	ENSORLG00020000988	ptcd1	88	47.484	Oryzias_latipes_hni
ENSECAG00000016617	-	87	47.833	ENSORLG00015010557	ptcd1	87	47.368	Oryzias_latipes_hsok
ENSECAG00000016617	-	90	47.434	ENSOMEG00000020627	ptcd1	91	47.141	Oryzias_melastigma
ENSECAG00000016617	-	99	79.403	ENSOGAG00000010877	-	100	79.403	Otolemur_garnettii
ENSECAG00000016617	-	100	78.762	ENSOARG00000018676	-	100	78.762	Ovis_aries
ENSECAG00000016617	-	100	78.652	ENSPPAG00000036024	-	100	78.792	Pan_paniscus
ENSECAG00000016617	-	100	86.197	ENSPPRG00000003478	-	100	86.197	Panthera_pardus
ENSECAG00000016617	-	100	78.511	ENSPTRG00000019452	-	100	78.652	Pan_troglodytes
ENSECAG00000016617	-	100	78.682	ENSPANG00000016730	-	100	79.243	Papio_anubis
ENSECAG00000016617	-	89	51.794	ENSPKIG00000014215	ptcd1	87	53.695	Paramormyrops_kingsleyae
ENSECAG00000016617	-	84	60.820	ENSPSIG00000011184	-	100	59.543	Pelodiscus_sinensis
ENSECAG00000016617	-	74	41.346	ENSPMAG00000009667	ptcd1	100	41.603	Petromyzon_marinus
ENSECAG00000016617	-	95	63.531	ENSPCIG00000024778	-	92	63.386	Phascolarctos_cinereus
ENSECAG00000016617	-	86	48.408	ENSPFOG00000004458	ptcd1	82	49.091	Poecilia_formosa
ENSECAG00000016617	-	84	49.106	ENSPLAG00000011051	ptcd1	82	49.421	Poecilia_latipinna
ENSECAG00000016617	-	86	48.183	ENSPMEG00000020547	ptcd1	82	48.926	Poecilia_mexicana
ENSECAG00000016617	-	83	49.832	ENSPREG00000000059	ptcd1	82	49.745	Poecilia_reticulata
ENSECAG00000016617	-	93	79.940	ENSPPYG00000017377	-	99	79.940	Pongo_abelii
ENSECAG00000016617	-	81	83.803	ENSPCAG00000001852	-	89	83.803	Procavia_capensis
ENSECAG00000016617	-	100	82.535	ENSPCOG00000018596	-	100	82.535	Propithecus_coquereli
ENSECAG00000016617	-	69	92.000	ENSPVAG00000007529	-	70	92.000	Pteropus_vampyrus
ENSECAG00000016617	-	83	49.917	ENSPNYG00000019993	ptcd1	80	49.500	Pundamilia_nyererei
ENSECAG00000016617	-	93	50.221	ENSPNAG00000014931	ptcd1	98	48.787	Pygocentrus_nattereri
ENSECAG00000016617	-	99	77.260	ENSRNOG00000000987	Ptcd1	99	76.977	Rattus_norvegicus
ENSECAG00000016617	-	100	78.481	ENSRBIG00000043393	-	100	79.044	Rhinopithecus_bieti
ENSECAG00000016617	-	100	78.481	ENSRROG00000036420	-	100	79.044	Rhinopithecus_roxellana
ENSECAG00000016617	-	100	80.337	ENSSBOG00000024114	-	100	80.478	Saimiri_boliviensis_boliviensis
ENSECAG00000016617	-	98	58.824	ENSSHAG00000011376	-	98	62.997	Sarcophilus_harrisii
ENSECAG00000016617	-	88	53.727	ENSSFOG00015007909	ptcd1	85	52.950	Scleropages_formosus
ENSECAG00000016617	-	87	46.497	ENSSMAG00000000218	ptcd1	95	46.785	Scophthalmus_maximus
ENSECAG00000016617	-	97	45.286	ENSSDUG00000015671	ptcd1	96	44.666	Seriola_dumerili
ENSECAG00000016617	-	94	45.333	ENSSLDG00000014261	ptcd1	93	44.428	Seriola_lalandi_dorsalis
ENSECAG00000016617	-	97	54.017	ENSSPUG00000003540	-	83	58.710	Sphenodon_punctatus
ENSECAG00000016617	-	87	48.499	ENSSPAG00000011049	ptcd1	84	48.499	Stegastes_partitus
ENSECAG00000016617	-	92	86.022	ENSSSCG00000007622	-	99	85.952	Sus_scrofa
ENSECAG00000016617	-	86	60.097	ENSTGUG00000007563	-	99	60.393	Taeniopygia_guttata
ENSECAG00000016617	-	84	48.833	ENSTRUG00000013471	ptcd1	81	47.508	Takifugu_rubripes
ENSECAG00000016617	-	91	47.872	ENSTNIG00000008271	ptcd1	92	46.789	Tetraodon_nigroviridis
ENSECAG00000016617	-	100	79.663	ENSTBEG00000011021	-	100	79.243	Tupaia_belangeri
ENSECAG00000016617	-	100	82.958	ENSTTRG00000003006	-	100	82.958	Tursiops_truncatus
ENSECAG00000016617	-	100	86.056	ENSUAMG00000008049	-	100	85.070	Ursus_americanus
ENSECAG00000016617	-	99	85.714	ENSVVUG00000008836	-	100	85.714	Vulpes_vulpes
ENSECAG00000016617	-	88	52.366	ENSXETG00000009891	ptcd1	91	51.932	Xenopus_tropicalis
ENSECAG00000016617	-	84	49.169	ENSXMAG00000015540	ptcd1	85	47.974	Xiphophorus_maculatus