EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000017022 (Gene tree)
Gene ID: 100069342
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 106207 bases
Position: chr29:23624031-23730237
Accession: 24805
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000014909	Upf2	PF04050.14	8.1e-33	1	1
ENSECAP00000014909	MIF4G	PF02854.19	1.7e-76	1	3
ENSECAP00000014909	MIF4G	PF02854.19	1.7e-76	2	3
ENSECAP00000014909	MIF4G	PF02854.19	1.7e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000018288	-	4181	XM_001916601	ENSECAP00000014909	1270 (aa)	XP_001916636	F7AZI4

Gene Model

Click here to download ENSECAG00000017022's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03013	RNA transport	KEGG
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000017022's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000017022	UPF2	100	97.956	ENSG00000151461	UPF2	100	97.956	Homo_sapiens
ENSECAG00000017022	UPF2	99	78.213	ENSAPOG00000015837	UPF2	100	78.056	Acanthochromis_polyacanthus
ENSECAG00000017022	UPF2	100	98.820	ENSAMEG00000004586	UPF2	100	98.820	Ailuropoda_melanoleuca
ENSECAG00000017022	UPF2	99	82.174	ENSACIG00000018078	UPF2	100	82.095	Amphilophus_citrinellus
ENSECAG00000017022	UPF2	100	82.358	ENSAOCG00000016766	UPF2	100	82.436	Amphiprion_ocellaris
ENSECAG00000017022	UPF2	100	82.436	ENSAPEG00000019084	UPF2	100	82.514	Amphiprion_percula
ENSECAG00000017022	UPF2	100	82.179	ENSATEG00000021677	UPF2	99	82.229	Anabas_testudineus
ENSECAG00000017022	UPF2	100	86.871	ENSAPLG00000010287	UPF2	90	91.138	Anas_platyrhynchos
ENSECAG00000017022	UPF2	100	91.896	ENSACAG00000009259	UPF2	100	92.211	Anolis_carolinensis
ENSECAG00000017022	UPF2	99	88.434	ENSANAG00000028451	UPF2	99	86.467	Aotus_nancymaae
ENSECAG00000017022	UPF2	100	81.499	ENSACLG00000012696	UPF2	100	82.201	Astatotilapia_calliptera
ENSECAG00000017022	UPF2	99	83.099	ENSAMXG00000013700	UPF2	99	82.473	Astyanax_mexicanus
ENSECAG00000017022	UPF2	100	98.741	ENSBTAG00000000288	UPF2	100	98.741	Bos_taurus
ENSECAG00000017022	UPF2	100	97.876	ENSCJAG00000020685	UPF2	100	97.876	Callithrix_jacchus
ENSECAG00000017022	UPF2	100	98.820	ENSCAFG00000004839	UPF2	100	98.820	Canis_familiaris
ENSECAG00000017022	UPF2	99	96.375	ENSCAFG00020005882	UPF2	98	98.417	Canis_lupus_dingo
ENSECAG00000017022	UPF2	100	98.820	ENSCHIG00000020359	UPF2	100	98.820	Capra_hircus
ENSECAG00000017022	UPF2	100	97.640	ENSTSYG00000000935	UPF2	100	97.640	Carlito_syrichta
ENSECAG00000017022	UPF2	91	87.349	ENSCAPG00000016658	UPF2	95	86.919	Cavia_aperea
ENSECAG00000017022	UPF2	99	96.111	ENSCPOG00000008809	UPF2	99	96.111	Cavia_porcellus
ENSECAG00000017022	UPF2	100	92.447	ENSCCAG00000035991	UPF2	100	92.447	Cebus_capucinus
ENSECAG00000017022	UPF2	100	97.956	ENSCATG00000032679	UPF2	100	97.956	Cercocebus_atys
ENSECAG00000017022	UPF2	100	97.874	ENSCLAG00000011434	UPF2	100	97.874	Chinchilla_lanigera
ENSECAG00000017022	UPF2	100	98.035	ENSCSAG00000013372	UPF2	100	98.035	Chlorocebus_sabaeus
ENSECAG00000017022	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSECAG00000017022	UPF2	99	93.060	ENSCPBG00000027823	UPF2	100	92.823	Chrysemys_picta_bellii
ENSECAG00000017022	UPF2	79	48.865	ENSCSAVG00000007772	-	79	50.509	Ciona_savignyi
ENSECAG00000017022	UPF2	99	90.938	ENSCANG00000040396	UPF2	100	90.795	Colobus_angolensis_palliatus
ENSECAG00000017022	UPF2	100	97.954	ENSCGRG00001019347	Upf2	100	97.954	Cricetulus_griseus_chok1gshd
ENSECAG00000017022	UPF2	100	97.954	ENSCGRG00000017993	Upf2	100	97.954	Cricetulus_griseus_crigri
ENSECAG00000017022	UPF2	99	77.734	ENSCSEG00000003520	UPF2	99	77.244	Cynoglossus_semilaevis
ENSECAG00000017022	UPF2	99	81.997	ENSCVAG00000006167	UPF2	100	81.525	Cyprinodon_variegatus
ENSECAG00000017022	UPF2	100	98.741	ENSDNOG00000018160	UPF2	100	98.741	Dasypus_novemcinctus
ENSECAG00000017022	UPF2	100	97.718	ENSDORG00000002478	Upf2	100	97.718	Dipodomys_ordii
ENSECAG00000017022	UPF2	89	36.304	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSECAG00000017022	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSECAG00000017022	UPF2	69	68.955	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSECAG00000017022	UPF2	100	99.921	ENSEASG00005019274	UPF2	100	99.921	Equus_asinus_asinus
ENSECAG00000017022	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSECAG00000017022	UPF2	99	81.079	ENSELUG00000012014	UPF2	100	81.415	Esox_lucius
ENSECAG00000017022	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	98.662	Felis_catus
ENSECAG00000017022	UPF2	100	93.155	ENSFALG00000001889	UPF2	98	93.627	Ficedula_albicollis
ENSECAG00000017022	UPF2	100	97.559	ENSFDAG00000014348	UPF2	100	97.559	Fukomys_damarensis
ENSECAG00000017022	UPF2	99	82.647	ENSFHEG00000009826	UPF2	99	82.171	Fundulus_heteroclitus
ENSECAG00000017022	UPF2	91	83.851	ENSGMOG00000005557	UPF2	100	79.609	Gadus_morhua
ENSECAG00000017022	UPF2	100	93.396	ENSGALG00000033772	UPF2	100	92.453	Gallus_gallus
ENSECAG00000017022	UPF2	100	80.328	ENSGAFG00000020867	UPF2	100	81.109	Gambusia_affinis
ENSECAG00000017022	UPF2	91	84.642	ENSGACG00000001080	UPF2	100	81.783	Gasterosteus_aculeatus
ENSECAG00000017022	UPF2	100	92.683	ENSGAGG00000002700	UPF2	100	93.076	Gopherus_agassizii
ENSECAG00000017022	UPF2	100	97.956	ENSGGOG00000001479	UPF2	100	97.956	Gorilla_gorilla
ENSECAG00000017022	UPF2	100	81.343	ENSHBUG00000004249	UPF2	100	82.174	Haplochromis_burtoni
ENSECAG00000017022	UPF2	100	97.874	ENSHGLG00000015176	-	100	97.874	Heterocephalus_glaber_female
ENSECAG00000017022	UPF2	99	86.682	ENSHGLG00000003822	-	99	85.973	Heterocephalus_glaber_female
ENSECAG00000017022	UPF2	99	94.874	ENSHGLG00100010036	UPF2	100	94.953	Heterocephalus_glaber_male
ENSECAG00000017022	UPF2	100	80.171	ENSHCOG00000004025	UPF2	99	80.171	Hippocampus_comes
ENSECAG00000017022	UPF2	100	81.123	ENSIPUG00000015524	UPF2	100	81.655	Ictalurus_punctatus
ENSECAG00000017022	UPF2	100	98.033	ENSSTOG00000013075	UPF2	100	98.033	Ictidomys_tridecemlineatus
ENSECAG00000017022	UPF2	100	96.932	ENSJJAG00000004913	Upf2	100	96.932	Jaculus_jaculus
ENSECAG00000017022	UPF2	92	84.851	ENSKMAG00000001071	UPF2	99	82.078	Kryptolebias_marmoratus
ENSECAG00000017022	UPF2	80	81.711	ENSLBEG00000000728	-	93	81.809	Labrus_bergylta
ENSECAG00000017022	UPF2	100	82.504	ENSLBEG00000016394	-	99	82.555	Labrus_bergylta
ENSECAG00000017022	UPF2	99	79.389	ENSLACG00000015945	UPF2	100	78.683	Latimeria_chalumnae
ENSECAG00000017022	UPF2	99	85.343	ENSLOCG00000015698	UPF2	100	85.264	Lepisosteus_oculatus
ENSECAG00000017022	UPF2	100	97.877	ENSMFAG00000043865	UPF2	100	97.877	Macaca_fascicularis
ENSECAG00000017022	UPF2	100	97.877	ENSMMUG00000008241	UPF2	100	97.877	Macaca_mulatta
ENSECAG00000017022	UPF2	81	97.073	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
ENSECAG00000017022	UPF2	95	100.000	ENSMLEG00000036120	UPF2	100	100.000	Mandrillus_leucophaeus
ENSECAG00000017022	UPF2	100	81.946	ENSMAMG00000018276	UPF2	100	81.995	Mastacembelus_armatus
ENSECAG00000017022	UPF2	100	81.499	ENSMZEG00005021595	UPF2	100	82.201	Maylandia_zebra
ENSECAG00000017022	UPF2	99	92.520	ENSMGAG00000004573	UPF2	99	91.969	Meleagris_gallopavo
ENSECAG00000017022	UPF2	100	95.673	ENSMAUG00000016512	Upf2	100	95.673	Mesocricetus_auratus
ENSECAG00000017022	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSECAG00000017022	UPF2	100	97.008	ENSMOCG00000008263	Upf2	100	97.008	Microtus_ochrogaster
ENSECAG00000017022	UPF2	90	83.203	ENSMMOG00000006528	UPF2	100	79.421	Mola_mola
ENSECAG00000017022	UPF2	100	95.515	ENSMODG00000016794	UPF2	100	95.987	Monodelphis_domestica
ENSECAG00000017022	UPF2	99	81.847	ENSMALG00000002663	UPF2	100	81.740	Monopterus_albus
ENSECAG00000017022	UPF2	100	97.325	MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	Mus_caroli
ENSECAG00000017022	UPF2	100	97.325	ENSMUSG00000043241	Upf2	100	97.325	Mus_musculus
ENSECAG00000017022	UPF2	100	97.168	MGP_PahariEiJ_G0019217	Upf2	100	97.524	Mus_pahari
ENSECAG00000017022	UPF2	100	97.561	MGP_SPRETEiJ_G0024075	Upf2	100	97.905	Mus_spretus
ENSECAG00000017022	UPF2	100	98.899	ENSMPUG00000001064	UPF2	100	98.899	Mustela_putorius_furo
ENSECAG00000017022	UPF2	99	98.429	ENSMLUG00000000228	UPF2	100	98.429	Myotis_lucifugus
ENSECAG00000017022	UPF2	100	81.499	ENSNBRG00000013629	UPF2	100	82.201	Neolamprologus_brichardi
ENSECAG00000017022	UPF2	100	97.799	ENSNLEG00000012058	UPF2	100	97.799	Nomascus_leucogenys
ENSECAG00000017022	UPF2	56	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSECAG00000017022	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSECAG00000017022	UPF2	100	97.402	ENSODEG00000001290	UPF2	100	97.402	Octodon_degus
ENSECAG00000017022	UPF2	100	81.577	ENSONIG00000017991	UPF2	100	82.279	Oreochromis_niloticus
ENSECAG00000017022	UPF2	99	97.490	ENSOCUG00000006230	UPF2	100	97.490	Oryctolagus_cuniculus
ENSECAG00000017022	UPF2	100	81.089	ENSORLG00000017189	UPF2	100	80.952	Oryzias_latipes
ENSECAG00000017022	UPF2	100	81.089	ENSORLG00020005969	UPF2	100	80.952	Oryzias_latipes_hni
ENSECAG00000017022	UPF2	100	81.089	ENSORLG00015005713	UPF2	100	80.952	Oryzias_latipes_hsok
ENSECAG00000017022	UPF2	99	77.769	ENSOMEG00000023420	UPF2	98	78.247	Oryzias_melastigma
ENSECAG00000017022	UPF2	100	97.876	ENSOGAG00000005796	UPF2	100	97.876	Otolemur_garnettii
ENSECAG00000017022	UPF2	100	98.665	ENSOARG00000014587	UPF2	100	98.665	Ovis_aries
ENSECAG00000017022	UPF2	99	93.354	ENSPPAG00000037953	UPF2	100	93.307	Pan_paniscus
ENSECAG00000017022	UPF2	100	98.662	ENSPPRG00000000690	UPF2	100	98.662	Panthera_pardus
ENSECAG00000017022	UPF2	100	98.662	ENSPTIG00000008867	UPF2	100	98.662	Panthera_tigris_altaica
ENSECAG00000017022	UPF2	100	97.956	ENSPTRG00000002291	UPF2	100	97.956	Pan_troglodytes
ENSECAG00000017022	UPF2	100	97.877	ENSPANG00000023399	UPF2	100	97.877	Papio_anubis
ENSECAG00000017022	UPF2	100	81.201	ENSPKIG00000025502	UPF2	100	80.265	Paramormyrops_kingsleyae
ENSECAG00000017022	UPF2	59	90.969	ENSPSIG00000015158	UPF2	95	91.501	Pelodiscus_sinensis
ENSECAG00000017022	UPF2	99	79.167	ENSPMGG00000005259	UPF2	100	80.031	Periophthalmus_magnuspinnatus
ENSECAG00000017022	UPF2	93	93.586	ENSPEMG00000015731	Upf2	99	95.044	Peromyscus_maniculatus_bairdii
ENSECAG00000017022	UPF2	100	95.122	ENSPCIG00000006656	UPF2	100	95.358	Phascolarctos_cinereus
ENSECAG00000017022	UPF2	100	80.406	ENSPFOG00000017118	UPF2	100	81.187	Poecilia_formosa
ENSECAG00000017022	UPF2	100	80.406	ENSPLAG00000005094	UPF2	100	81.187	Poecilia_latipinna
ENSECAG00000017022	UPF2	100	80.406	ENSPMEG00000017009	UPF2	100	81.187	Poecilia_mexicana
ENSECAG00000017022	UPF2	99	80.329	ENSPREG00000021880	UPF2	100	81.426	Poecilia_reticulata
ENSECAG00000017022	UPF2	66	99.402	ENSPPYG00000002089	-	100	99.402	Pongo_abelii
ENSECAG00000017022	UPF2	100	83.399	ENSPCAG00000000684	UPF2	100	83.871	Procavia_capensis
ENSECAG00000017022	UPF2	99	95.193	ENSPCOG00000021656	UPF2	100	95.272	Propithecus_coquereli
ENSECAG00000017022	UPF2	100	90.723	ENSPVAG00000017286	UPF2	100	91.116	Pteropus_vampyrus
ENSECAG00000017022	UPF2	99	79.046	ENSPNYG00000017096	UPF2	100	79.750	Pundamilia_nyererei
ENSECAG00000017022	UPF2	100	83.307	ENSPNAG00000009357	UPF2	100	82.839	Pygocentrus_nattereri
ENSECAG00000017022	UPF2	99	90.816	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSECAG00000017022	UPF2	99	96.848	ENSRBIG00000037780	UPF2	100	96.848	Rhinopithecus_bieti
ENSECAG00000017022	UPF2	100	97.799	ENSRROG00000043547	UPF2	100	97.799	Rhinopithecus_roxellana
ENSECAG00000017022	UPF2	100	98.033	ENSSBOG00000020012	UPF2	100	98.033	Saimiri_boliviensis_boliviensis
ENSECAG00000017022	UPF2	100	81.669	ENSSFOG00015023788	upf2	100	83.073	Scleropages_formosus
ENSECAG00000017022	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	79.690	Scophthalmus_maximus
ENSECAG00000017022	UPF2	100	82.201	ENSSDUG00000017244	UPF2	99	82.358	Seriola_dumerili
ENSECAG00000017022	UPF2	99	80.486	ENSSLDG00000016866	UPF2	100	80.721	Seriola_lalandi_dorsalis
ENSECAG00000017022	UPF2	100	96.223	ENSSARG00000008615	UPF2	100	96.223	Sorex_araneus
ENSECAG00000017022	UPF2	99	89.685	ENSSPUG00000014544	UPF2	99	90.079	Sphenodon_punctatus
ENSECAG00000017022	UPF2	68	99.079	ENSSSCG00000011117	-	100	99.079	Sus_scrofa
ENSECAG00000017022	UPF2	99	93.139	ENSTGUG00000002163	-	100	93.612	Taeniopygia_guttata
ENSECAG00000017022	UPF2	100	81.761	ENSTRUG00000007519	UPF2	99	81.733	Takifugu_rubripes
ENSECAG00000017022	UPF2	100	80.156	ENSTNIG00000004453	UPF2	100	79.891	Tetraodon_nigroviridis
ENSECAG00000017022	UPF2	93	89.585	ENSTBEG00000012679	UPF2	93	89.162	Tupaia_belangeri
ENSECAG00000017022	UPF2	100	98.504	ENSTTRG00000016388	UPF2	100	98.504	Tursiops_truncatus
ENSECAG00000017022	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSECAG00000017022	UPF2	100	98.977	ENSUMAG00000012953	UPF2	95	98.977	Ursus_maritimus
ENSECAG00000017022	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSECAG00000017022	UPF2	100	98.741	ENSVVUG00000006166	UPF2	100	98.741	Vulpes_vulpes
ENSECAG00000017022	UPF2	100	82.462	ENSXETG00000033103	UPF2	100	80.887	Xenopus_tropicalis
ENSECAG00000017022	UPF2	92	84.615	ENSXCOG00000011604	UPF2	100	81.079	Xiphophorus_couchianus
ENSECAG00000017022	UPF2	92	84.898	ENSXMAG00000017209	UPF2	100	81.030	Xiphophorus_maculatus