EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSECAG00000017141 (Gene tree)
Gene ID
100069294
Gene Symbol
UPF3A
Alias
-
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Equus_caballus
Status
putative
Strand
Plus strand
Length
17879 bases
Position
chr17:80656672-80674550
Accession
24806
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSECAP00000014731Smg4_UPF3PF03467.157.6e-5111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSECAT00000018081-1410-ENSECAP00000014731469 (aa)XP_023477680F6WXU6
Gene Model
Click here to download ENSECAG00000017141's gene model file
Pathways
Pathway IDPathway NameSource
ecb03013RNA transportKEGG
ecb03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000017141's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSECAG00000017141UPF3A8447.677ENSECAG00000016947UPF3B9045.814
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSECAG00000017141UPF3A5255.422ENSG00000125351UPF3B8863.158Homo_sapiens
ENSECAG00000017141UPF3A10073.402ENSG00000169062UPF3A9979.808Homo_sapiens
ENSECAG00000017141UPF3A5158.800ENSAPOG00000012775upf3b9450.000Acanthochromis_polyacanthus
ENSECAG00000017141UPF3A8644.575ENSAMEG00000000163UPF3B9050.926Ailuropoda_melanoleuca
ENSECAG00000017141UPF3A9378.947ENSAMEG00000004259UPF3A9978.947Ailuropoda_melanoleuca
ENSECAG00000017141UPF3A5158.000ENSAOCG00000000706upf3b9548.081Amphiprion_ocellaris
ENSECAG00000017141UPF3A5158.800ENSAPEG00000005545upf3b9449.887Amphiprion_percula
ENSECAG00000017141UPF3A9357.494ENSATEG00000005843upf3a8859.016Anabas_testudineus
ENSECAG00000017141UPF3A8346.618ENSACAG00000003625UPF3B9150.575Anolis_carolinensis
ENSECAG00000017141UPF3A8566.187ENSACAG00000001540UPF3A9966.187Anolis_carolinensis
ENSECAG00000017141UPF3A8245.455ENSANAG00000025598-8946.009Aotus_nancymaae
ENSECAG00000017141UPF3A8444.743ENSANAG00000021894-8862.632Aotus_nancymaae
ENSECAG00000017141UPF3A10070.309ENSANAG00000021713UPF3A10070.309Aotus_nancymaae
ENSECAG00000017141UPF3A9158.581ENSAMXG00000002608upf3a9158.701Astyanax_mexicanus
ENSECAG00000017141UPF3A8444.499ENSCJAG00000004975UPF3B8862.105Callithrix_jacchus
ENSECAG00000017141UPF3A10071.753ENSCJAG00000019102UPF3A10071.753Callithrix_jacchus
ENSECAG00000017141UPF3A8445.833ENSCAFG00000018426UPF3B9251.152Canis_familiaris
ENSECAG00000017141UPF3A9676.559ENSCAFG00000006504UPF3A9976.559Canis_familiaris
ENSECAG00000017141UPF3A9877.101ENSCAFG00020014268UPF3A9977.101Canis_lupus_dingo
ENSECAG00000017141UPF3A8445.409ENSCAFG00020004074UPF3B8163.000Canis_lupus_dingo
ENSECAG00000017141UPF3A8444.787ENSCHIG00000018011-9249.441Capra_hircus
ENSECAG00000017141UPF3A8340.554ENSCHIG00000011454-9138.480Capra_hircus
ENSECAG00000017141UPF3A9671.581ENSCHIG00000008682UPF3A9071.613Capra_hircus
ENSECAG00000017141UPF3A8444.787ENSCHIG00000000247-9049.217Capra_hircus
ENSECAG00000017141UPF3A7866.931ENSTSYG00000001918UPF3A10066.931Carlito_syrichta
ENSECAG00000017141UPF3A8444.853ENSTSYG00000014690UPF3B8758.974Carlito_syrichta
ENSECAG00000017141UPF3A8864.169ENSCPOG00000006824UPF3A9463.971Cavia_porcellus
ENSECAG00000017141UPF3A10073.196ENSCCAG00000018406UPF3A10073.196Cebus_capucinus
ENSECAG00000017141UPF3A8238.265ENSCCAG00000029813-9237.500Cebus_capucinus
ENSECAG00000017141UPF3A5851.799ENSCATG00000017506UPF3B8962.827Cercocebus_atys
ENSECAG00000017141UPF3A10072.577ENSCATG00000029733UPF3A10072.577Cercocebus_atys
ENSECAG00000017141UPF3A5652.536ENSCLAG00000003260UPF3B9050.230Chinchilla_lanigera
ENSECAG00000017141UPF3A10071.516ENSCSAG00000017388UPF3A10071.516Chlorocebus_sabaeus
ENSECAG00000017141UPF3A6292.857ENSCHOG00000006918-8177.778Choloepus_hoffmanni
ENSECAG00000017141UPF3A5158.506ENSCPBG00000020685UPF3B8945.763Chrysemys_picta_bellii
ENSECAG00000017141UPF3A5354.373ENSCGRG00001013643-8351.133Cricetulus_griseus_chok1gshd
ENSECAG00000017141UPF3A8970.276ENSCGRG00001017387Upf3a9570.120Cricetulus_griseus_chok1gshd
ENSECAG00000017141UPF3A5055.833ENSCGRG00001006858-8850.238Cricetulus_griseus_chok1gshd
ENSECAG00000017141UPF3A8870.163ENSCGRG00000001468Upf3a9570.120Cricetulus_griseus_crigri
ENSECAG00000017141UPF3A8047.356ENSCSEG00000002046upf3b8948.214Cynoglossus_semilaevis
ENSECAG00000017141UPF3A8857.968ENSCSEG00000005106upf3a8858.726Cynoglossus_semilaevis
ENSECAG00000017141UPF3A8260.050ENSCVAG00000022333upf3a8360.050Cyprinodon_variegatus
ENSECAG00000017141UPF3A5157.258ENSDARG00000000489upf3b8951.408Danio_rerio
ENSECAG00000017141UPF3A9455.947ENSDARG00000069297upf3a9354.526Danio_rerio
ENSECAG00000017141UPF3A8772.998ENSDNOG00000034391UPF3A9375.306Dasypus_novemcinctus
ENSECAG00000017141UPF3A8643.764ENSDNOG00000008665UPF3B9049.217Dasypus_novemcinctus
ENSECAG00000017141UPF3A8445.542ENSDORG00000006077Upf3b8851.991Dipodomys_ordii
ENSECAG00000017141UPF3A10064.754ENSETEG00000010110UPF3A10065.984Echinops_telfairi
ENSECAG00000017141UPF3A8447.677ENSEASG00005012919UPF3B8059.574Equus_asinus_asinus
ENSECAG00000017141UPF3A10098.507ENSEASG00005021884UPF3A10098.507Equus_asinus_asinus
ENSECAG00000017141UPF3A9755.579ENSELUG00000011050upf3a9556.250Esox_lucius
ENSECAG00000017141UPF3A9976.240ENSFCAG00000014602UPF3A9976.240Felis_catus
ENSECAG00000017141UPF3A5256.400ENSFCAG00000004388UPF3B9050.345Felis_catus
ENSECAG00000017141UPF3A8843.678ENSFDAG00000018869UPF3B9148.864Fukomys_damarensis
ENSECAG00000017141UPF3A6962.426ENSGMOG00000019615upf3a10061.834Gadus_morhua
ENSECAG00000017141UPF3A5161.446ENSGMOG00000001621upf3b8748.441Gadus_morhua
ENSECAG00000017141UPF3A8957.143ENSGAFG00000021170upf3a8857.143Gambusia_affinis
ENSECAG00000017141UPF3A5057.025ENSGACG00000017435upf3b8849.275Gasterosteus_aculeatus
ENSECAG00000017141UPF3A6962.048ENSGACG00000001972upf3a10062.349Gasterosteus_aculeatus
ENSECAG00000017141UPF3A10072.784ENSGGOG00000015428UPF3A10072.784Gorilla_gorilla
ENSECAG00000017141UPF3A5255.422ENSGGOG00000023995UPF3B9050.233Gorilla_gorilla
ENSECAG00000017141UPF3A9857.816ENSGGOG00000041219-9459.775Gorilla_gorilla
ENSECAG00000017141UPF3A9853.376ENSGGOG00000043074-9357.016Gorilla_gorilla
ENSECAG00000017141UPF3A8167.766ENSHGLG00000001544UPF3A8668.800Heterocephalus_glaber_female
ENSECAG00000017141UPF3A8843.448ENSHGLG00000019582-9149.091Heterocephalus_glaber_female
ENSECAG00000017141UPF3A5649.635ENSHGLG00000011189-8847.861Heterocephalus_glaber_female
ENSECAG00000017141UPF3A5649.635ENSHGLG00100001889-8847.838Heterocephalus_glaber_male
ENSECAG00000017141UPF3A8167.766ENSHGLG00100013244UPF3A8668.800Heterocephalus_glaber_male
ENSECAG00000017141UPF3A8843.488ENSHGLG00100002042-9148.966Heterocephalus_glaber_male
ENSECAG00000017141UPF3A8149.265ENSHCOG00000017004upf3b8748.792Hippocampus_comes
ENSECAG00000017141UPF3A9457.143ENSIPUG00000023450upf3a9158.161Ictalurus_punctatus
ENSECAG00000017141UPF3A5163.454ENSIPUG00000019249upf3b9049.415Ictalurus_punctatus
ENSECAG00000017141UPF3A8645.794ENSSTOG00000001101UPF3B9051.157Ictidomys_tridecemlineatus
ENSECAG00000017141UPF3A8742.890ENSJJAG00000000053Upf3b8950.591Jaculus_jaculus
ENSECAG00000017141UPF3A9355.361ENSKMAG00000004381upf3a8856.751Kryptolebias_marmoratus
ENSECAG00000017141UPF3A5259.375ENSLBEG00000028689upf3b5561.176Labrus_bergylta
ENSECAG00000017141UPF3A6445.970ENSLACG00000006645UPF3A10040.921Latimeria_chalumnae
ENSECAG00000017141UPF3A9460.268ENSLOCG00000002665upf3a9061.905Lepisosteus_oculatus
ENSECAG00000017141UPF3A5166.532ENSLOCG00000015238upf3b9547.696Lepisosteus_oculatus
ENSECAG00000017141UPF3A8246.766ENSLAFG00000001267UPF3B9051.270Loxodonta_africana
ENSECAG00000017141UPF3A8461.751ENSLAFG00000023358UPF3A10061.772Loxodonta_africana
ENSECAG00000017141UPF3A10067.886ENSMFAG00000045016UPF3A10067.886Macaca_fascicularis
ENSECAG00000017141UPF3A5851.799ENSMFAG00000045414UPF3B8962.827Macaca_fascicularis
ENSECAG00000017141UPF3A9271.396ENSMMUG00000007449UPF3A10069.502Macaca_mulatta
ENSECAG00000017141UPF3A5851.799ENSMMUG00000020222UPF3B8962.827Macaca_mulatta
ENSECAG00000017141UPF3A5851.799ENSMNEG00000039794UPF3B8962.827Macaca_nemestrina
ENSECAG00000017141UPF3A9966.397ENSMNEG00000036402UPF3A9070.628Macaca_nemestrina
ENSECAG00000017141UPF3A5851.799ENSMLEG00000010999UPF3B8962.827Mandrillus_leucophaeus
ENSECAG00000017141UPF3A8772.902ENSMLEG00000014726UPF3A9472.902Mandrillus_leucophaeus
ENSECAG00000017141UPF3A9355.508ENSMAMG00000018364upf3a8956.885Mastacembelus_armatus
ENSECAG00000017141UPF3A8366.667ENSMGAG00000014837UPF3A9966.667Meleagris_gallopavo
ENSECAG00000017141UPF3A8750.469ENSMAUG00000008705Upf3b8851.905Mesocricetus_auratus
ENSECAG00000017141UPF3A7075.602ENSMOCG00000000550Upf3a8576.038Microtus_ochrogaster
ENSECAG00000017141UPF3A8644.213ENSMOCG00000017893Upf3b8948.853Microtus_ochrogaster
ENSECAG00000017141UPF3A8152.463ENSMODG00000010232UPF3B9352.580Monodelphis_domestica
ENSECAG00000017141UPF3A8869.697ENSMODG00000003159UPF3A10069.697Monodelphis_domestica
ENSECAG00000017141UPF3A8567.470MGP_CAROLIEiJ_G0030848Upf3a9567.470Mus_caroli
ENSECAG00000017141UPF3A8644.159MGP_CAROLIEiJ_G0032999Upf3b9049.420Mus_caroli
ENSECAG00000017141UPF3A8567.952ENSMUSG00000038398Upf3a9567.952Mus_musculus
ENSECAG00000017141UPF3A8643.925ENSMUSG00000036572Upf3b9050.231Mus_musculus
ENSECAG00000017141UPF3A8644.626MGP_PahariEiJ_G0031543Upf3b9049.884Mus_pahari
ENSECAG00000017141UPF3A8567.470MGP_PahariEiJ_G0021311Upf3a9567.470Mus_pahari
ENSECAG00000017141UPF3A8643.925MGP_SPRETEiJ_G0034152Upf3b9050.231Mus_spretus
ENSECAG00000017141UPF3A8567.711MGP_SPRETEiJ_G0031958Upf3a9567.711Mus_spretus
ENSECAG00000017141UPF3A5256.400ENSMPUG00000001531UPF3B9250.808Mustela_putorius_furo
ENSECAG00000017141UPF3A9978.306ENSMPUG00000009139UPF3A9978.306Mustela_putorius_furo
ENSECAG00000017141UPF3A8245.750ENSMLUG00000010821UPF3B9051.620Myotis_lucifugus
ENSECAG00000017141UPF3A8779.810ENSMLUG00000015905UPF3A10079.810Myotis_lucifugus
ENSECAG00000017141UPF3A8971.198ENSNGAG00000019314Upf3a9570.843Nannospalax_galili
ENSECAG00000017141UPF3A5255.422ENSNLEG00000014897UPF3B9050.233Nomascus_leucogenys
ENSECAG00000017141UPF3A10072.016ENSNLEG00000007563UPF3A10072.016Nomascus_leucogenys
ENSECAG00000017141UPF3A6167.949ENSOPRG00000008846-5369.658Ochotona_princeps
ENSECAG00000017141UPF3A8743.357ENSODEG00000002186-9048.174Octodon_degus
ENSECAG00000017141UPF3A7663.115ENSOANG00000006985-9562.842Ornithorhynchus_anatinus
ENSECAG00000017141UPF3A8743.468ENSOCUG00000010213UPF3B8850.691Oryctolagus_cuniculus
ENSECAG00000017141UPF3A9961.845ENSOCUG00000008450UPF3A9463.516Oryctolagus_cuniculus
ENSECAG00000017141UPF3A8757.143ENSORLG00000010911upf3a8758.118Oryzias_latipes
ENSECAG00000017141UPF3A8141.294ENSORLG00000001026upf3b8848.551Oryzias_latipes
ENSECAG00000017141UPF3A8757.245ENSORLG00020014317upf3a8757.482Oryzias_latipes_hni
ENSECAG00000017141UPF3A8141.294ENSORLG00020003758upf3b8848.551Oryzias_latipes_hni
ENSECAG00000017141UPF3A8141.294ENSORLG00015012954upf3b8844.878Oryzias_latipes_hsok
ENSECAG00000017141UPF3A8757.442ENSORLG00015017339upf3a5157.442Oryzias_latipes_hsok
ENSECAG00000017141UPF3A8856.979ENSOMEG00000014425upf3a8857.944Oryzias_melastigma
ENSECAG00000017141UPF3A5055.602ENSOMEG00000014736upf3b8949.279Oryzias_melastigma
ENSECAG00000017141UPF3A8842.466ENSOGAG00000033003-9448.081Otolemur_garnettii
ENSECAG00000017141UPF3A8670.952ENSOGAG00000004788UPF3A9572.070Otolemur_garnettii
ENSECAG00000017141UPF3A5454.851ENSOGAG00000004643-9050.926Otolemur_garnettii
ENSECAG00000017141UPF3A8444.471ENSOARG00000016051-9048.889Ovis_aries
ENSECAG00000017141UPF3A9573.407ENSOARG00000009004UPF3A9176.047Ovis_aries
ENSECAG00000017141UPF3A8343.590ENSOARG00000007869-9340.769Ovis_aries
ENSECAG00000017141UPF3A10071.546ENSPPAG00000042267UPF3A9672.103Pan_paniscus
ENSECAG00000017141UPF3A5255.422ENSPPAG00000040390UPF3B9050.233Pan_paniscus
ENSECAG00000017141UPF3A8245.500ENSPPRG00000023536UPF3B9050.922Panthera_pardus
ENSECAG00000017141UPF3A9977.066ENSPPRG00000025062UPF3A9977.066Panthera_pardus
ENSECAG00000017141UPF3A5256.400ENSPTIG00000015264UPF3B9049.441Panthera_tigris_altaica
ENSECAG00000017141UPF3A5255.422ENSPTRG00000022228UPF3B9050.233Pan_troglodytes
ENSECAG00000017141UPF3A10072.371ENSPTRG00000006073UPF3A10072.371Pan_troglodytes
ENSECAG00000017141UPF3A9357.978ENSPTRG00000051640-9957.978Pan_troglodytes
ENSECAG00000017141UPF3A8760.671ENSPTRG00000041187-9160.432Pan_troglodytes
ENSECAG00000017141UPF3A9654.721ENSPTRG00000041835-10054.936Pan_troglodytes
ENSECAG00000017141UPF3A5851.799ENSPANG00000000900UPF3B8962.827Papio_anubis
ENSECAG00000017141UPF3A10072.784ENSPANG00000004346UPF3A10072.784Papio_anubis
ENSECAG00000017141UPF3A5164.659ENSPKIG00000019226upf3b7670.339Paramormyrops_kingsleyae
ENSECAG00000017141UPF3A9951.587ENSPKIG00000004422upf3a9754.442Paramormyrops_kingsleyae
ENSECAG00000017141UPF3A8768.421ENSPSIG00000007468UPF3A10068.421Pelodiscus_sinensis
ENSECAG00000017141UPF3A8970.276ENSPEMG00000019968-9570.361Peromyscus_maniculatus_bairdii
ENSECAG00000017141UPF3A8743.807ENSPEMG00000012352Upf3b8850.355Peromyscus_maniculatus_bairdii
ENSECAG00000017141UPF3A7876.793ENSPCIG00000019590-8783.824Phascolarctos_cinereus
ENSECAG00000017141UPF3A8444.366ENSPCIG00000028914UPF3B8944.811Phascolarctos_cinereus
ENSECAG00000017141UPF3A8958.314ENSPFOG00000013222upf3a8858.314Poecilia_formosa
ENSECAG00000017141UPF3A8957.377ENSPLAG00000011960upf3a9057.377Poecilia_latipinna
ENSECAG00000017141UPF3A8954.767ENSPMEG00000000836upf3a8955.381Poecilia_mexicana
ENSECAG00000017141UPF3A10072.784ENSPPYG00000005536UPF3A10072.784Pongo_abelii
ENSECAG00000017141UPF3A8645.330ENSPCAG00000009464UPF3B9050.562Procavia_capensis
ENSECAG00000017141UPF3A8068.155ENSPCAG00000013124UPF3A7568.038Procavia_capensis
ENSECAG00000017141UPF3A8246.384ENSPCOG00000021960UPF3B9050.694Propithecus_coquereli
ENSECAG00000017141UPF3A10072.784ENSPVAG00000005656UPF3A10073.402Pteropus_vampyrus
ENSECAG00000017141UPF3A5162.550ENSPNAG00000021528upf3b9049.412Pygocentrus_nattereri
ENSECAG00000017141UPF3A9057.541ENSPNAG00000019532upf3a9157.541Pygocentrus_nattereri
ENSECAG00000017141UPF3A5454.275ENSRNOG00000039994Upf3b9049.769Rattus_norvegicus
ENSECAG00000017141UPF3A8669.194ENSRNOG00000017397Upf3a9568.983Rattus_norvegicus
ENSECAG00000017141UPF3A8972.430ENSRBIG00000034007UPF3A9672.562Rhinopithecus_bieti
ENSECAG00000017141UPF3A8772.596ENSRROG00000012212UPF3A8572.596Rhinopithecus_roxellana
ENSECAG00000017141UPF3A5255.422ENSRROG00000041031UPF3B8962.827Rhinopithecus_roxellana
ENSECAG00000017141UPF3A8443.750ENSSBOG00000019740UPF3B9063.158Saimiri_boliviensis_boliviensis
ENSECAG00000017141UPF3A10064.948ENSSBOG00000029989UPF3A10064.948Saimiri_boliviensis_boliviensis
ENSECAG00000017141UPF3A8147.525ENSSHAG00000008634UPF3B8646.209Sarcophilus_harrisii
ENSECAG00000017141UPF3A8669.121ENSSHAG00000009895UPF3A10069.121Sarcophilus_harrisii
ENSECAG00000017141UPF3A5358.594ENSSFOG00015005614upf3b9445.940Scleropages_formosus
ENSECAG00000017141UPF3A9354.705ENSSFOG00015021851upf3a9654.505Scleropages_formosus
ENSECAG00000017141UPF3A5163.745ENSSMAG00000012913upf3b8849.640Scophthalmus_maximus
ENSECAG00000017141UPF3A8848.966ENSSDUG00000009680upf3a8955.882Seriola_dumerili
ENSECAG00000017141UPF3A8166.324ENSSARG00000007262UPF3A9463.496Sorex_araneus
ENSECAG00000017141UPF3A5064.754ENSSPAG00000009989upf3b9150.469Stegastes_partitus
ENSECAG00000017141UPF3A8445.122ENSSSCG00000012617UPF3B9050.812Sus_scrofa
ENSECAG00000017141UPF3A10074.639ENSSSCG00000024679UPF3A9774.639Sus_scrofa
ENSECAG00000017141UPF3A8271.501ENSTGUG00000009493UPF3A9971.501Taeniopygia_guttata
ENSECAG00000017141UPF3A8350.000ENSTNIG00000014973upf3a10050.868Tetraodon_nigroviridis
ENSECAG00000017141UPF3A6861.515ENSTBEG00000017186-10061.515Tupaia_belangeri
ENSECAG00000017141UPF3A10066.186ENSTTRG00000015414UPF3A10066.186Tursiops_truncatus
ENSECAG00000017141UPF3A8444.853ENSUAMG00000024565UPF3B7957.447Ursus_americanus
ENSECAG00000017141UPF3A8043.702ENSUMAG00000002150UPF3B8445.431Ursus_maritimus
ENSECAG00000017141UPF3A7842.386ENSVPAG00000009971UPF3B9349.490Vicugna_pacos
ENSECAG00000017141UPF3A8775.721ENSVPAG00000003525UPF3A10075.721Vicugna_pacos
ENSECAG00000017141UPF3A9974.380ENSVVUG00000013538UPF3A9874.380Vulpes_vulpes
ENSECAG00000017141UPF3A8445.658ENSVVUG00000011594UPF3B9063.021Vulpes_vulpes
ENSECAG00000017141UPF3A8157.801ENSXETG00000002572upf3a9157.801Xenopus_tropicalis
ENSECAG00000017141UPF3A8346.377ENSXETG00000007440upf3b7668.182Xenopus_tropicalis
ENSECAG00000017141UPF3A8957.611ENSXMAG00000013452upf3a8857.611Xiphophorus_maculatus
ENSECAG00000017141UPF3A8639.819ENSXMAG00000013680upf3b9249.650Xiphophorus_maculatus

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