EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000017163 (Gene tree)
Gene ID: 100061100
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 3289 bases
Position: chr6:36761329-36764617
Accession: 15417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000014758	APOBEC_N	PF08210.11	2.7e-27	1	1
ENSECAP00000037510	APOBEC_N	PF08210.11	2.7e-27	1	1
ENSECAP00000014758	APOBEC_C	PF05240.14	2.9e-23	1	1
ENSECAP00000037510	APOBEC_C	PF05240.14	2.9e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000041121	-	850	XM_014740541	ENSECAP00000037510	191 (aa)	XP_014596027	UPI000C9EADDC
ENSECAT00000018111	-	859	XM_014740541	ENSECAP00000014758	191 (aa)	XP_014596027	F6WR88

Gene Model

Click here to download ENSECAG00000017163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000017163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000017163	APOBEC1	57	40.594	ENSECAG00000006071	-	56	40.594

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000017163	APOBEC1	100	82.199	ENSG00000111701	APOBEC1	81	82.199	Homo_sapiens
ENSECAG00000017163	APOBEC1	99	84.211	ENSAMEG00000007098	APOBEC1	80	84.211	Ailuropoda_melanoleuca
ENSECAG00000017163	APOBEC1	66	43.651	ENSACAG00000028578	-	69	43.651	Anolis_carolinensis
ENSECAG00000017163	APOBEC1	99	84.737	ENSANAG00000027743	APOBEC1	77	84.737	Aotus_nancymaae
ENSECAG00000017163	APOBEC1	99	79.474	ENSBTAG00000014683	APOBEC1	81	79.474	Bos_taurus
ENSECAG00000017163	APOBEC1	100	83.246	ENSCJAG00000005398	APOBEC1	86	83.246	Callithrix_jacchus
ENSECAG00000017163	APOBEC1	99	80.526	ENSCAFG00000013901	APOBEC1	81	80.526	Canis_familiaris
ENSECAG00000017163	APOBEC1	99	81.053	ENSCAFG00020003511	APOBEC1	79	81.053	Canis_lupus_dingo
ENSECAG00000017163	APOBEC1	99	80.000	ENSCHIG00000011898	APOBEC1	79	80.000	Capra_hircus
ENSECAG00000017163	APOBEC1	53	79.208	ENSTSYG00000029141	APOBEC1	72	79.208	Carlito_syrichta
ENSECAG00000017163	APOBEC1	96	71.038	ENSCAPG00000015882	-	85	71.038	Cavia_aperea
ENSECAG00000017163	APOBEC1	99	67.725	ENSCPOG00000033068	APOBEC1	80	67.725	Cavia_porcellus
ENSECAG00000017163	APOBEC1	100	83.770	ENSCCAG00000022258	APOBEC1	81	83.770	Cebus_capucinus
ENSECAG00000017163	APOBEC1	100	83.770	ENSCATG00000021613	APOBEC1	77	83.770	Cercocebus_atys
ENSECAG00000017163	APOBEC1	96	71.196	ENSCLAG00000014645	APOBEC1	80	71.196	Chinchilla_lanigera
ENSECAG00000017163	APOBEC1	100	83.246	ENSCSAG00000009817	APOBEC1	100	83.246	Chlorocebus_sabaeus
ENSECAG00000017163	APOBEC1	57	75.000	ENSCHOG00000002355	-	89	75.000	Choloepus_hoffmanni
ENSECAG00000017163	APOBEC1	73	50.000	ENSCPBG00000014335	-	57	50.000	Chrysemys_picta_bellii
ENSECAG00000017163	APOBEC1	83	43.452	ENSCPBG00000017398	-	74	43.452	Chrysemys_picta_bellii
ENSECAG00000017163	APOBEC1	98	39.474	ENSCPBG00000014331	-	76	39.474	Chrysemys_picta_bellii
ENSECAG00000017163	APOBEC1	81	48.387	ENSCPBG00000014327	-	58	48.387	Chrysemys_picta_bellii
ENSECAG00000017163	APOBEC1	87	45.238	ENSCPBG00000014328	-	73	45.238	Chrysemys_picta_bellii
ENSECAG00000017163	APOBEC1	100	82.199	ENSCANG00000038359	APOBEC1	83	82.199	Colobus_angolensis_palliatus
ENSECAG00000017163	APOBEC1	95	72.527	ENSCGRG00001011130	Apobec1	79	72.527	Cricetulus_griseus_chok1gshd
ENSECAG00000017163	APOBEC1	95	72.527	ENSCGRG00000008644	Apobec1	79	72.527	Cricetulus_griseus_crigri
ENSECAG00000017163	APOBEC1	99	79.474	ENSDNOG00000010926	APOBEC1	81	79.474	Dasypus_novemcinctus
ENSECAG00000017163	APOBEC1	95	68.306	ENSDORG00000023717	Apobec1	86	68.306	Dipodomys_ordii
ENSECAG00000017163	APOBEC1	98	77.778	ENSETEG00000004867	APOBEC1	80	77.778	Echinops_telfairi
ENSECAG00000017163	APOBEC1	100	100.000	ENSEASG00005015951	APOBEC1	80	100.000	Equus_asinus_asinus
ENSECAG00000017163	APOBEC1	91	50.867	ENSEEUG00000007530	-	82	50.867	Erinaceus_europaeus
ENSECAG00000017163	APOBEC1	96	65.761	ENSEEUG00000009112	-	82	65.761	Erinaceus_europaeus
ENSECAG00000017163	APOBEC1	99	84.737	ENSFCAG00000009350	APOBEC1	81	84.737	Felis_catus
ENSECAG00000017163	APOBEC1	57	54.545	ENSFALG00000007257	-	55	54.545	Ficedula_albicollis
ENSECAG00000017163	APOBEC1	99	57.143	ENSFDAG00000018470	APOBEC1	91	57.143	Fukomys_damarensis
ENSECAG00000017163	APOBEC1	73	49.296	ENSGAGG00000004947	-	70	49.296	Gopherus_agassizii
ENSECAG00000017163	APOBEC1	81	46.104	ENSGAGG00000021744	-	60	46.104	Gopherus_agassizii
ENSECAG00000017163	APOBEC1	90	47.126	ENSGAGG00000011837	-	80	51.695	Gopherus_agassizii
ENSECAG00000017163	APOBEC1	99	61.905	ENSHGLG00000001495	APOBEC1	80	61.905	Heterocephalus_glaber_female
ENSECAG00000017163	APOBEC1	99	61.905	ENSHGLG00100002187	APOBEC1	80	61.905	Heterocephalus_glaber_male
ENSECAG00000017163	APOBEC1	96	63.587	ENSSTOG00000021971	APOBEC1	68	83.582	Ictidomys_tridecemlineatus
ENSECAG00000017163	APOBEC1	95	76.243	ENSJJAG00000022108	Apobec1	79	76.243	Jaculus_jaculus
ENSECAG00000017163	APOBEC1	99	80.526	ENSLAFG00000030837	APOBEC1	85	80.526	Loxodonta_africana
ENSECAG00000017163	APOBEC1	100	84.293	ENSMFAG00000000277	APOBEC1	100	84.293	Macaca_fascicularis
ENSECAG00000017163	APOBEC1	100	83.770	ENSMNEG00000029670	APOBEC1	81	83.770	Macaca_nemestrina
ENSECAG00000017163	APOBEC1	100	83.770	ENSMLEG00000036301	APOBEC1	81	83.770	Mandrillus_leucophaeus
ENSECAG00000017163	APOBEC1	95	74.176	ENSMAUG00000022167	Apobec1	82	74.176	Mesocricetus_auratus
ENSECAG00000017163	APOBEC1	99	81.579	ENSMICG00000043645	APOBEC1	83	81.579	Microcebus_murinus
ENSECAG00000017163	APOBEC1	99	65.789	ENSMODG00000018004	APOBEC1	81	65.789	Monodelphis_domestica
ENSECAG00000017163	APOBEC1	95	70.718	ENSMUSG00000040613	Apobec1	79	70.718	Mus_musculus
ENSECAG00000017163	APOBEC1	94	70.000	MGP_PahariEiJ_G0022580	-	79	70.000	Mus_pahari
ENSECAG00000017163	APOBEC1	95	70.718	MGP_SPRETEiJ_G0029857	Apobec1	79	70.718	Mus_spretus
ENSECAG00000017163	APOBEC1	99	79.474	ENSMPUG00000017532	APOBEC1	81	79.474	Mustela_putorius_furo
ENSECAG00000017163	APOBEC1	95	74.725	ENSNGAG00000022607	Apobec1	79	74.725	Nannospalax_galili
ENSECAG00000017163	APOBEC1	100	83.246	ENSNLEG00000005342	APOBEC1	81	83.246	Nomascus_leucogenys
ENSECAG00000017163	APOBEC1	99	65.263	ENSMEUG00000013406	APOBEC1	81	65.263	Notamacropus_eugenii
ENSECAG00000017163	APOBEC1	74	62.411	ENSOPRG00000009508	-	78	62.411	Ochotona_princeps
ENSECAG00000017163	APOBEC1	99	74.737	ENSOCUG00000025736	APOBEC1	71	74.737	Oryctolagus_cuniculus
ENSECAG00000017163	APOBEC1	99	79.474	ENSOGAG00000026415	APOBEC1	81	79.474	Otolemur_garnettii
ENSECAG00000017163	APOBEC1	99	81.053	ENSOARG00000002072	APOBEC1	79	81.053	Ovis_aries
ENSECAG00000017163	APOBEC1	87	82.530	ENSPPAG00000027657	APOBEC1	76	82.530	Pan_paniscus
ENSECAG00000017163	APOBEC1	99	85.263	ENSPPRG00000012182	APOBEC1	81	85.263	Panthera_pardus
ENSECAG00000017163	APOBEC1	99	85.263	ENSPTIG00000020280	APOBEC1	81	85.263	Panthera_tigris_altaica
ENSECAG00000017163	APOBEC1	100	83.246	ENSPTRG00000004614	APOBEC1	81	83.246	Pan_troglodytes
ENSECAG00000017163	APOBEC1	100	83.246	ENSPANG00000021027	APOBEC1	81	83.246	Papio_anubis
ENSECAG00000017163	APOBEC1	66	50.459	ENSPSIG00000012791	-	72	50.459	Pelodiscus_sinensis
ENSECAG00000017163	APOBEC1	67	51.562	ENSPSIG00000012568	-	55	51.562	Pelodiscus_sinensis
ENSECAG00000017163	APOBEC1	95	73.077	ENSPEMG00000023841	Apobec1	79	73.077	Peromyscus_maniculatus_bairdii
ENSECAG00000017163	APOBEC1	99	68.947	ENSPCIG00000023973	APOBEC1	81	68.947	Phascolarctos_cinereus
ENSECAG00000017163	APOBEC1	100	82.199	ENSPPYG00000004228	APOBEC1	77	82.199	Pongo_abelii
ENSECAG00000017163	APOBEC1	74	82.979	ENSPCAG00000008733	APOBEC1	75	82.979	Procavia_capensis
ENSECAG00000017163	APOBEC1	99	83.684	ENSPCOG00000013957	APOBEC1	84	83.684	Propithecus_coquereli
ENSECAG00000017163	APOBEC1	99	63.684	ENSPVAG00000010709	APOBEC1	80	63.684	Pteropus_vampyrus
ENSECAG00000017163	APOBEC1	95	69.613	ENSRNOG00000015411	Apobec1	79	69.613	Rattus_norvegicus
ENSECAG00000017163	APOBEC1	100	82.199	ENSRBIG00000031161	APOBEC1	81	82.199	Rhinopithecus_bieti
ENSECAG00000017163	APOBEC1	100	82.199	ENSRROG00000033576	APOBEC1	100	82.199	Rhinopithecus_roxellana
ENSECAG00000017163	APOBEC1	74	83.803	ENSSBOG00000030587	APOBEC1	80	83.803	Saimiri_boliviensis_boliviensis
ENSECAG00000017163	APOBEC1	99	67.895	ENSSHAG00000008925	APOBEC1	83	67.895	Sarcophilus_harrisii
ENSECAG00000017163	APOBEC1	50	70.833	ENSSARG00000011972	-	73	70.833	Sorex_araneus
ENSECAG00000017163	APOBEC1	72	69.343	ENSSARG00000000032	-	80	69.343	Sorex_araneus
ENSECAG00000017163	APOBEC1	90	39.655	ENSSPUG00000009044	-	67	39.655	Sphenodon_punctatus
ENSECAG00000017163	APOBEC1	99	81.579	ENSSSCG00000000668	APOBEC1	81	81.579	Sus_scrofa
ENSECAG00000017163	APOBEC1	58	54.955	ENSTGUG00000013118	-	76	54.955	Taeniopygia_guttata
ENSECAG00000017163	APOBEC1	99	75.789	ENSTBEG00000010043	APOBEC1	80	75.789	Tupaia_belangeri
ENSECAG00000017163	APOBEC1	74	79.433	ENSTTRG00000014015	APOBEC1	75	79.433	Tursiops_truncatus
ENSECAG00000017163	APOBEC1	99	83.684	ENSUAMG00000011636	APOBEC1	78	83.684	Ursus_americanus
ENSECAG00000017163	APOBEC1	99	83.684	ENSUMAG00000016552	APOBEC1	78	83.684	Ursus_maritimus
ENSECAG00000017163	APOBEC1	99	78.421	ENSVPAG00000001343	APOBEC1	81	78.421	Vicugna_pacos
ENSECAG00000017163	APOBEC1	99	82.105	ENSVVUG00000010522	APOBEC1	81	82.105	Vulpes_vulpes