EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000017286 (Gene tree)
Gene ID: 100053345
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 97157 bases
Position: chr17:694898-792054
Accession: 21971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000046595	RRM_1	PF00076.22	1.6e-32	1	2
ENSECAP00000046595	RRM_1	PF00076.22	1.6e-32	2	2
ENSECAP00000014974	RRM_1	PF00076.22	3.8e-32	1	2
ENSECAP00000014974	RRM_1	PF00076.22	3.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000056540	-	1234	-	ENSECAP00000046595	389 (aa)	-	-
ENSECAT00000018359	-	1867	-	ENSECAP00000014974	519 (aa)	XP_023477116	F7AH65

Gene Model

Click here to download ENSECAG00000017286's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000017286's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000017286	PSPC1	83	73.006	ENSECAG00000000642	SFPQ	54	68.579
ENSECAG00000017286	PSPC1	91	59.283	ENSECAG00000008502	NONO	77	69.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000017286	PSPC1	100	97.897	ENSG00000121390	PSPC1	100	97.897	Homo_sapiens
ENSECAG00000017286	PSPC1	88	78.134	ENSAPOG00000015946	pspc1	88	68.763	Acanthochromis_polyacanthus
ENSECAG00000017286	PSPC1	100	98.464	ENSAMEG00000017420	PSPC1	100	98.464	Ailuropoda_melanoleuca
ENSECAG00000017286	PSPC1	98	64.103	ENSACIG00000018695	pspc1	100	55.307	Amphilophus_citrinellus
ENSECAG00000017286	PSPC1	83	80.556	ENSAOCG00000005279	pspc1	88	68.632	Amphiprion_ocellaris
ENSECAG00000017286	PSPC1	83	80.556	ENSAPEG00000015927	pspc1	79	73.488	Amphiprion_percula
ENSECAG00000017286	PSPC1	83	67.593	ENSATEG00000004878	pspc1	87	59.023	Anabas_testudineus
ENSECAG00000017286	PSPC1	81	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSECAG00000017286	PSPC1	78	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSECAG00000017286	PSPC1	76	69.388	ENSACAG00000013307	-	56	65.097	Anolis_carolinensis
ENSECAG00000017286	PSPC1	89	91.631	ENSACAG00000002093	PSPC1	88	91.845	Anolis_carolinensis
ENSECAG00000017286	PSPC1	100	97.889	ENSANAG00000000059	PSPC1	100	97.889	Aotus_nancymaae
ENSECAG00000017286	PSPC1	99	63.000	ENSACLG00000027220	pspc1	100	54.972	Astatotilapia_calliptera
ENSECAG00000017286	PSPC1	99	63.858	ENSAMXG00000036881	pspc1	88	70.231	Astyanax_mexicanus
ENSECAG00000017286	PSPC1	100	96.545	ENSBTAG00000003934	PSPC1	100	96.545	Bos_taurus
ENSECAG00000017286	PSPC1	100	97.889	ENSCJAG00000004554	PSPC1	100	97.889	Callithrix_jacchus
ENSECAG00000017286	PSPC1	100	98.464	ENSCAFG00020002009	PSPC1	100	98.464	Canis_lupus_dingo
ENSECAG00000017286	PSPC1	100	96.545	ENSCHIG00000016708	PSPC1	100	96.545	Capra_hircus
ENSECAG00000017286	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSECAG00000017286	PSPC1	100	96.931	ENSCPOG00000000395	PSPC1	100	96.931	Cavia_porcellus
ENSECAG00000017286	PSPC1	100	97.889	ENSCCAG00000033498	PSPC1	100	97.889	Cebus_capucinus
ENSECAG00000017286	PSPC1	100	97.897	ENSCATG00000036434	PSPC1	100	97.897	Cercocebus_atys
ENSECAG00000017286	PSPC1	89	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSECAG00000017286	PSPC1	98	96.114	ENSCHOG00000008913	PSPC1	100	89.675	Choloepus_hoffmanni
ENSECAG00000017286	PSPC1	99	87.810	ENSCPBG00000020859	PSPC1	99	87.619	Chrysemys_picta_bellii
ENSECAG00000017286	PSPC1	79	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSECAG00000017286	PSPC1	68	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSECAG00000017286	PSPC1	100	97.126	ENSCGRG00001018368	Pspc1	100	97.126	Cricetulus_griseus_chok1gshd
ENSECAG00000017286	PSPC1	100	97.126	ENSCGRG00000011724	Pspc1	100	97.126	Cricetulus_griseus_crigri
ENSECAG00000017286	PSPC1	82	78.616	ENSCVAG00000007679	-	86	65.443	Cyprinodon_variegatus
ENSECAG00000017286	PSPC1	98	72.468	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSECAG00000017286	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSECAG00000017286	PSPC1	100	93.881	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSECAG00000017286	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSECAG00000017286	PSPC1	83	73.313	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSECAG00000017286	PSPC1	82	45.087	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSECAG00000017286	PSPC1	100	100.000	ENSEASG00005000119	PSPC1	100	100.000	Equus_asinus_asinus
ENSECAG00000017286	PSPC1	73	93.443	ENSEEUG00000011288	-	88	83.648	Erinaceus_europaeus
ENSECAG00000017286	PSPC1	98	72.449	ENSELUG00000003746	pspc1	78	82.154	Esox_lucius
ENSECAG00000017286	PSPC1	100	98.464	ENSFCAG00000027841	PSPC1	100	98.464	Felis_catus
ENSECAG00000017286	PSPC1	90	94.861	ENSFALG00000008750	PSPC1	99	87.713	Ficedula_albicollis
ENSECAG00000017286	PSPC1	100	94.990	ENSFDAG00000002617	PSPC1	100	94.990	Fukomys_damarensis
ENSECAG00000017286	PSPC1	74	82.986	ENSGMOG00000015074	pspc1	86	65.817	Gadus_morhua
ENSECAG00000017286	PSPC1	99	88.213	ENSGALG00000017142	PSPC1	99	88.023	Gallus_gallus
ENSECAG00000017286	PSPC1	98	68.354	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSECAG00000017286	PSPC1	85	73.414	ENSGACG00000014901	pspc1	93	73.414	Gasterosteus_aculeatus
ENSECAG00000017286	PSPC1	81	74.528	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSECAG00000017286	PSPC1	99	87.619	ENSGAGG00000019164	PSPC1	99	87.429	Gopherus_agassizii
ENSECAG00000017286	PSPC1	100	97.706	ENSGGOG00000003414	PSPC1	100	97.706	Gorilla_gorilla
ENSECAG00000017286	PSPC1	99	70.483	ENSHBUG00000001139	pspc1	100	64.850	Haplochromis_burtoni
ENSECAG00000017286	PSPC1	100	96.737	ENSHGLG00000018811	PSPC1	100	96.737	Heterocephalus_glaber_female
ENSECAG00000017286	PSPC1	89	92.775	ENSHGLG00100007962	PSPC1	100	92.775	Heterocephalus_glaber_male
ENSECAG00000017286	PSPC1	85	73.333	ENSHCOG00000013251	pspc1	83	71.277	Hippocampus_comes
ENSECAG00000017286	PSPC1	98	73.834	ENSIPUG00000013192	pspc1	88	73.885	Ictalurus_punctatus
ENSECAG00000017286	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSECAG00000017286	PSPC1	100	97.126	ENSJJAG00000018334	Pspc1	100	97.126	Jaculus_jaculus
ENSECAG00000017286	PSPC1	89	55.508	ENSKMAG00000013525	-	84	54.624	Kryptolebias_marmoratus
ENSECAG00000017286	PSPC1	85	77.039	ENSLBEG00000004474	pspc1	70	77.744	Labrus_bergylta
ENSECAG00000017286	PSPC1	99	77.239	ENSLACG00000010762	PSPC1	99	78.585	Latimeria_chalumnae
ENSECAG00000017286	PSPC1	89	84.382	ENSLOCG00000010832	pspc1	99	77.799	Lepisosteus_oculatus
ENSECAG00000017286	PSPC1	100	96.935	ENSLAFG00000010968	PSPC1	100	96.935	Loxodonta_africana
ENSECAG00000017286	PSPC1	100	97.897	ENSMFAG00000032728	PSPC1	100	97.897	Macaca_fascicularis
ENSECAG00000017286	PSPC1	100	97.897	ENSMMUG00000020262	PSPC1	100	97.897	Macaca_mulatta
ENSECAG00000017286	PSPC1	100	97.897	ENSMNEG00000027401	PSPC1	100	97.897	Macaca_nemestrina
ENSECAG00000017286	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	99.248	Mandrillus_leucophaeus
ENSECAG00000017286	PSPC1	86	75.595	ENSMAMG00000004333	pspc1	87	62.687	Mastacembelus_armatus
ENSECAG00000017286	PSPC1	99	63.000	ENSMZEG00005005726	pspc1	100	54.972	Maylandia_zebra
ENSECAG00000017286	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSECAG00000017286	PSPC1	99	89.948	ENSMAUG00000021067	Pspc1	99	91.323	Mesocricetus_auratus
ENSECAG00000017286	PSPC1	100	97.889	ENSMICG00000013970	PSPC1	100	97.889	Microcebus_murinus
ENSECAG00000017286	PSPC1	100	96.935	ENSMOCG00000006060	Pspc1	100	96.935	Microtus_ochrogaster
ENSECAG00000017286	PSPC1	88	54.360	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSECAG00000017286	PSPC1	99	95.630	ENSMODG00000008029	PSPC1	78	95.876	Monodelphis_domestica
ENSECAG00000017286	PSPC1	87	73.504	ENSMALG00000008914	pspc1	88	67.872	Monopterus_albus
ENSECAG00000017286	PSPC1	100	96.750	MGP_CAROLIEiJ_G0019341	Pspc1	100	96.750	Mus_caroli
ENSECAG00000017286	PSPC1	100	96.941	ENSMUSG00000021938	Pspc1	100	96.941	Mus_musculus
ENSECAG00000017286	PSPC1	100	97.132	MGP_PahariEiJ_G0030359	Pspc1	100	97.132	Mus_pahari
ENSECAG00000017286	PSPC1	100	97.132	MGP_SPRETEiJ_G0020232	Pspc1	100	97.132	Mus_spretus
ENSECAG00000017286	PSPC1	100	98.273	ENSMPUG00000013347	PSPC1	100	98.273	Mustela_putorius_furo
ENSECAG00000017286	PSPC1	100	96.565	ENSMLUG00000017663	PSPC1	100	96.565	Myotis_lucifugus
ENSECAG00000017286	PSPC1	100	96.935	ENSNGAG00000011271	Pspc1	100	96.935	Nannospalax_galili
ENSECAG00000017286	PSPC1	98	64.394	ENSNBRG00000014059	pspc1	92	62.532	Neolamprologus_brichardi
ENSECAG00000017286	PSPC1	100	97.897	ENSNLEG00000001294	PSPC1	100	97.897	Nomascus_leucogenys
ENSECAG00000017286	PSPC1	84	92.969	ENSMEUG00000000476	PSPC1	84	94.141	Notamacropus_eugenii
ENSECAG00000017286	PSPC1	99	86.563	ENSODEG00000019012	-	100	85.769	Octodon_degus
ENSECAG00000017286	PSPC1	100	85.221	ENSODEG00000007817	-	100	81.404	Octodon_degus
ENSECAG00000017286	PSPC1	98	71.282	ENSONIG00000012010	pspc1	99	64.126	Oreochromis_niloticus
ENSECAG00000017286	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSECAG00000017286	PSPC1	99	66.538	ENSOANG00000011381	-	99	66.154	Ornithorhynchus_anatinus
ENSECAG00000017286	PSPC1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSECAG00000017286	PSPC1	87	73.803	ENSORLG00000004232	-	87	64.596	Oryzias_latipes
ENSECAG00000017286	PSPC1	87	72.958	ENSORLG00020000578	PSPC1	87	66.454	Oryzias_latipes_hni
ENSECAG00000017286	PSPC1	87	74.085	ENSORLG00015017480	pspc1	82	69.108	Oryzias_latipes_hsok
ENSECAG00000017286	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSECAG00000017286	PSPC1	100	97.706	ENSOGAG00000012643	PSPC1	100	97.706	Otolemur_garnettii
ENSECAG00000017286	PSPC1	100	92.131	ENSOARG00000014163	PSPC1	100	92.131	Ovis_aries
ENSECAG00000017286	PSPC1	85	98.792	ENSPPAG00000009836	PSPC1	94	98.792	Pan_paniscus
ENSECAG00000017286	PSPC1	100	98.464	ENSPPRG00000008833	PSPC1	100	98.464	Panthera_pardus
ENSECAG00000017286	PSPC1	100	83.815	ENSPTIG00000016917	PSPC1	100	83.815	Panthera_tigris_altaica
ENSECAG00000017286	PSPC1	100	97.201	ENSPTRG00000005677	PSPC1	100	97.201	Pan_troglodytes
ENSECAG00000017286	PSPC1	100	97.897	ENSPANG00000001992	PSPC1	100	97.897	Papio_anubis
ENSECAG00000017286	PSPC1	93	79.167	ENSPKIG00000003578	pspc1	89	73.486	Paramormyrops_kingsleyae
ENSECAG00000017286	PSPC1	99	86.692	ENSPSIG00000005168	PSPC1	99	86.932	Pelodiscus_sinensis
ENSECAG00000017286	PSPC1	79	69.745	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSECAG00000017286	PSPC1	100	97.126	ENSPEMG00000015214	Pspc1	100	97.126	Peromyscus_maniculatus_bairdii
ENSECAG00000017286	PSPC1	72	44.637	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSECAG00000017286	PSPC1	99	96.169	ENSPCIG00000017680	PSPC1	100	96.169	Phascolarctos_cinereus
ENSECAG00000017286	PSPC1	92	71.809	ENSPFOG00000003362	pspc1	97	64.381	Poecilia_formosa
ENSECAG00000017286	PSPC1	92	71.809	ENSPLAG00000011540	pspc1	99	63.265	Poecilia_latipinna
ENSECAG00000017286	PSPC1	76	68.350	ENSPLAG00000004407	-	51	61.035	Poecilia_latipinna
ENSECAG00000017286	PSPC1	78	67.763	ENSPMEG00000001025	-	51	60.705	Poecilia_mexicana
ENSECAG00000017286	PSPC1	92	71.277	ENSPMEG00000008322	pspc1	99	62.894	Poecilia_mexicana
ENSECAG00000017286	PSPC1	92	71.011	ENSPREG00000007786	pspc1	99	62.894	Poecilia_reticulata
ENSECAG00000017286	PSPC1	100	97.889	ENSPPYG00000005186	PSPC1	100	97.889	Pongo_abelii
ENSECAG00000017286	PSPC1	72	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSECAG00000017286	PSPC1	98	97.150	ENSPCOG00000014364	PSPC1	100	93.308	Propithecus_coquereli
ENSECAG00000017286	PSPC1	99	96.883	ENSPVAG00000005036	PSPC1	100	95.183	Pteropus_vampyrus
ENSECAG00000017286	PSPC1	99	64.467	ENSPNYG00000008893	pspc1	100	55.347	Pundamilia_nyererei
ENSECAG00000017286	PSPC1	98	74.026	ENSPNAG00000016511	pspc1	100	68.480	Pygocentrus_nattereri
ENSECAG00000017286	PSPC1	100	96.935	ENSRNOG00000020782	Pspc1	100	96.935	Rattus_norvegicus
ENSECAG00000017286	PSPC1	93	98.357	ENSRBIG00000036057	PSPC1	100	98.357	Rhinopithecus_bieti
ENSECAG00000017286	PSPC1	100	97.897	ENSRROG00000036334	PSPC1	100	97.897	Rhinopithecus_roxellana
ENSECAG00000017286	PSPC1	80	89.104	ENSSBOG00000028172	PSPC1	91	94.624	Saimiri_boliviensis_boliviensis
ENSECAG00000017286	PSPC1	100	89.905	ENSSHAG00000004696	PSPC1	100	90.667	Sarcophilus_harrisii
ENSECAG00000017286	PSPC1	84	85.015	ENSSFOG00015001395	pspc1	89	78.972	Scleropages_formosus
ENSECAG00000017286	PSPC1	92	70.079	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSECAG00000017286	PSPC1	84	80.428	ENSSDUG00000010651	pspc1	76	74.419	Seriola_dumerili
ENSECAG00000017286	PSPC1	83	74.303	ENSSLDG00000004284	pspc1	86	59.746	Seriola_lalandi_dorsalis
ENSECAG00000017286	PSPC1	100	90.944	ENSSARG00000000888	PSPC1	100	90.944	Sorex_araneus
ENSECAG00000017286	PSPC1	99	75.568	ENSSPUG00000008550	PSPC1	99	75.518	Sphenodon_punctatus
ENSECAG00000017286	PSPC1	82	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSECAG00000017286	PSPC1	84	80.122	ENSSPAG00000001921	pspc1	88	67.010	Stegastes_partitus
ENSECAG00000017286	PSPC1	100	97.126	ENSSSCG00000009569	PSPC1	100	97.126	Sus_scrofa
ENSECAG00000017286	PSPC1	90	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSECAG00000017286	PSPC1	92	66.216	ENSTRUG00000011335	pspc1	90	61.587	Takifugu_rubripes
ENSECAG00000017286	PSPC1	84	72.477	ENSTNIG00000010358	pspc1	88	62.796	Tetraodon_nigroviridis
ENSECAG00000017286	PSPC1	99	85.233	ENSTBEG00000002361	PSPC1	100	75.192	Tupaia_belangeri
ENSECAG00000017286	PSPC1	100	97.308	ENSTTRG00000003343	PSPC1	100	97.308	Tursiops_truncatus
ENSECAG00000017286	PSPC1	89	98.281	ENSUAMG00000012309	PSPC1	100	98.281	Ursus_americanus
ENSECAG00000017286	PSPC1	93	98.357	ENSUMAG00000013993	PSPC1	100	98.357	Ursus_maritimus
ENSECAG00000017286	PSPC1	77	99.499	ENSVPAG00000010029	PSPC1	100	99.499	Vicugna_pacos
ENSECAG00000017286	PSPC1	100	98.464	ENSVVUG00000006414	PSPC1	100	98.464	Vulpes_vulpes
ENSECAG00000017286	PSPC1	92	71.892	ENSXCOG00000017438	pspc1	93	68.367	Xiphophorus_couchianus
ENSECAG00000017286	PSPC1	92	72.162	ENSXMAG00000007929	pspc1	93	68.622	Xiphophorus_maculatus