EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000017792 (Gene tree)
Gene ID: 100050655
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 147754 bases
Position: chr13:31607660-31755413
Accession: 51216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000015789	RNA_bind	PF08675.11	2.4e-33	1	1
ENSECAP00000039033	RNA_bind	PF08675.11	2.4e-33	1	1
ENSECAP00000015789	CAF1	PF04857.20	6.7e-89	1	1
ENSECAP00000039033	CAF1	PF04857.20	7e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000052361	-	1941	-	ENSECAP00000039033	646 (aa)	-	-
ENSECAT00000019299	-	1914	-	ENSECAP00000015789	637 (aa)	XP_001490195	F6Q3J7

Gene Model

Click here to download ENSECAG00000017792's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000017792's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000017792	PARN	100	92.645	ENSG00000140694	PARN	100	96.610	Homo_sapiens
ENSECAG00000017792	PARN	100	93.584	ENSAMEG00000011208	PARN	100	93.584	Ailuropoda_melanoleuca
ENSECAG00000017792	PARN	83	75.560	ENSACIG00000000619	parn	83	75.560	Amphilophus_citrinellus
ENSECAG00000017792	PARN	100	64.586	ENSAOCG00000003465	parn	83	73.024	Amphiprion_ocellaris
ENSECAG00000017792	PARN	74	77.801	ENSAPEG00000010661	parn	91	77.801	Amphiprion_percula
ENSECAG00000017792	PARN	99	68.300	ENSATEG00000004661	parn	88	70.531	Anabas_testudineus
ENSECAG00000017792	PARN	99	82.938	ENSAPLG00000013914	PARN	99	82.938	Anas_platyrhynchos
ENSECAG00000017792	PARN	100	77.077	ENSACAG00000004973	PARN	100	77.077	Anolis_carolinensis
ENSECAG00000017792	PARN	100	91.862	ENSANAG00000031516	PARN	100	96.610	Aotus_nancymaae
ENSECAG00000017792	PARN	100	65.096	ENSACLG00000004742	parn	100	64.714	Astatotilapia_calliptera
ENSECAG00000017792	PARN	90	71.826	ENSAMXG00000012390	parn	92	71.826	Astyanax_mexicanus
ENSECAG00000017792	PARN	100	91.850	ENSBTAG00000018097	PARN	100	94.454	Bos_taurus
ENSECAG00000017792	PARN	100	92.801	ENSCJAG00000015866	PARN	100	96.610	Callithrix_jacchus
ENSECAG00000017792	PARN	100	93.887	ENSCAFG00000018795	PARN	100	93.887	Canis_familiaris
ENSECAG00000017792	PARN	100	93.887	ENSCAFG00020024126	PARN	100	93.887	Canis_lupus_dingo
ENSECAG00000017792	PARN	100	95.141	ENSCHIG00000018143	PARN	100	95.141	Capra_hircus
ENSECAG00000017792	PARN	73	62.630	ENSCAPG00000007984	PARN	78	62.630	Cavia_aperea
ENSECAG00000017792	PARN	100	88.558	ENSCPOG00000002263	PARN	100	88.558	Cavia_porcellus
ENSECAG00000017792	PARN	100	92.645	ENSCCAG00000030367	PARN	100	96.610	Cebus_capucinus
ENSECAG00000017792	PARN	53	36.735	ENSCATG00000033196	PNLDC1	71	36.735	Cercocebus_atys
ENSECAG00000017792	PARN	90	96.552	ENSCATG00000041368	PARN	100	96.610	Cercocebus_atys
ENSECAG00000017792	PARN	100	89.342	ENSCLAG00000015406	PARN	99	89.342	Chinchilla_lanigera
ENSECAG00000017792	PARN	100	93.271	ENSCSAG00000008142	PARN	100	93.271	Chlorocebus_sabaeus
ENSECAG00000017792	PARN	99	76.862	ENSCHOG00000007014	PARN	100	76.862	Choloepus_hoffmanni
ENSECAG00000017792	PARN	88	83.957	ENSCPBG00000006609	PARN	97	84.171	Chrysemys_picta_bellii
ENSECAG00000017792	PARN	80	43.715	ENSCING00000010142	-	99	43.715	Ciona_intestinalis
ENSECAG00000017792	PARN	100	81.498	ENSCANG00000028849	-	100	96.610	Colobus_angolensis_palliatus
ENSECAG00000017792	PARN	100	85.647	ENSCGRG00001012096	Parn	100	85.647	Cricetulus_griseus_chok1gshd
ENSECAG00000017792	PARN	100	85.647	ENSCGRG00000004939	Parn	100	85.647	Cricetulus_griseus_crigri
ENSECAG00000017792	PARN	100	63.439	ENSCSEG00000002064	parn	100	63.801	Cynoglossus_semilaevis
ENSECAG00000017792	PARN	91	72.696	ENSCVAG00000014848	parn	83	72.696	Cyprinodon_variegatus
ENSECAG00000017792	PARN	100	64.394	ENSDARG00000102634	parn	92	68.152	Danio_rerio
ENSECAG00000017792	PARN	100	93.103	ENSDNOG00000000833	PARN	98	95.504	Dasypus_novemcinctus
ENSECAG00000017792	PARN	74	93.916	ENSETEG00000014828	-	78	93.916	Echinops_telfairi
ENSECAG00000017792	PARN	100	99.529	ENSEASG00005011400	PARN	100	99.529	Equus_asinus_asinus
ENSECAG00000017792	PARN	86	83.258	ENSEEUG00000010370	PARN	86	83.258	Erinaceus_europaeus
ENSECAG00000017792	PARN	90	72.899	ENSELUG00000013139	parn	75	72.899	Esox_lucius
ENSECAG00000017792	PARN	100	94.671	ENSFCAG00000044961	PARN	100	96.610	Felis_catus
ENSECAG00000017792	PARN	58	31.053	ENSFALG00000012081	PNLDC1	70	31.053	Ficedula_albicollis
ENSECAG00000017792	PARN	99	82.250	ENSFALG00000003911	PARN	98	82.250	Ficedula_albicollis
ENSECAG00000017792	PARN	100	89.185	ENSFDAG00000009234	PARN	100	89.185	Fukomys_damarensis
ENSECAG00000017792	PARN	91	65.829	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSECAG00000017792	PARN	83	76.306	ENSGMOG00000003231	parn	97	76.306	Gadus_morhua
ENSECAG00000017792	PARN	100	81.348	ENSGALG00000003091	PARN	100	81.348	Gallus_gallus
ENSECAG00000017792	PARN	90	72.899	ENSGAFG00000011061	parn	84	72.420	Gambusia_affinis
ENSECAG00000017792	PARN	100	68.585	ENSGACG00000019501	parn	100	69.051	Gasterosteus_aculeatus
ENSECAG00000017792	PARN	51	78.834	ENSGAGG00000023281	PARN	83	78.834	Gopherus_agassizii
ENSECAG00000017792	PARN	97	92.915	ENSGGOG00000025224	PARN	100	96.610	Gorilla_gorilla
ENSECAG00000017792	PARN	92	71.980	ENSHBUG00000017906	parn	90	75.978	Haplochromis_burtoni
ENSECAG00000017792	PARN	100	89.028	ENSHGLG00000010886	PARN	100	89.028	Heterocephalus_glaber_female
ENSECAG00000017792	PARN	100	89.028	ENSHGLG00100014659	PARN	100	89.028	Heterocephalus_glaber_male
ENSECAG00000017792	PARN	82	72.590	ENSHCOG00000008683	parn	91	72.590	Hippocampus_comes
ENSECAG00000017792	PARN	90	63.351	ENSIPUG00000012401	parn	84	63.351	Ictalurus_punctatus
ENSECAG00000017792	PARN	100	91.223	ENSSTOG00000007519	PARN	100	91.223	Ictidomys_tridecemlineatus
ENSECAG00000017792	PARN	100	88.558	ENSJJAG00000023049	Parn	100	88.558	Jaculus_jaculus
ENSECAG00000017792	PARN	91	72.774	ENSKMAG00000009462	parn	83	72.774	Kryptolebias_marmoratus
ENSECAG00000017792	PARN	90	72.509	ENSLBEG00000009167	parn	89	72.509	Labrus_bergylta
ENSECAG00000017792	PARN	79	78.175	ENSLACG00000004207	PARN	100	76.179	Latimeria_chalumnae
ENSECAG00000017792	PARN	90	75.563	ENSLOCG00000000715	parn	83	75.563	Lepisosteus_oculatus
ENSECAG00000017792	PARN	100	92.476	ENSLAFG00000015036	PARN	100	92.476	Loxodonta_africana
ENSECAG00000017792	PARN	100	88.281	ENSMFAG00000044852	PARN	100	96.610	Macaca_fascicularis
ENSECAG00000017792	PARN	100	92.958	ENSMMUG00000018849	PARN	100	96.610	Macaca_mulatta
ENSECAG00000017792	PARN	100	93.114	ENSMNEG00000045108	PARN	100	96.610	Macaca_nemestrina
ENSECAG00000017792	PARN	100	92.958	ENSMLEG00000031743	PARN	100	96.610	Mandrillus_leucophaeus
ENSECAG00000017792	PARN	99	67.378	ENSMAMG00000006939	parn	84	71.429	Mastacembelus_armatus
ENSECAG00000017792	PARN	92	71.980	ENSMZEG00005013590	parn	90	75.746	Maylandia_zebra
ENSECAG00000017792	PARN	95	81.743	ENSMGAG00000001004	PARN	95	81.743	Meleagris_gallopavo
ENSECAG00000017792	PARN	100	80.123	ENSMAUG00000008025	Parn	100	80.123	Mesocricetus_auratus
ENSECAG00000017792	PARN	100	93.417	ENSMICG00000016053	PARN	100	98.305	Microcebus_murinus
ENSECAG00000017792	PARN	78	90.891	ENSMOCG00000022211	Parn	100	90.891	Microtus_ochrogaster
ENSECAG00000017792	PARN	100	65.839	ENSMMOG00000011333	parn	87	75.514	Mola_mola
ENSECAG00000017792	PARN	78	93.548	ENSMODG00000004915	PARN	99	93.548	Monodelphis_domestica
ENSECAG00000017792	PARN	83	78.026	ENSMALG00000019426	parn	91	78.026	Monopterus_albus
ENSECAG00000017792	PARN	100	86.991	MGP_CAROLIEiJ_G0020466	Parn	100	86.991	Mus_caroli
ENSECAG00000017792	PARN	100	86.364	ENSMUSG00000022685	Parn	100	93.902	Mus_musculus
ENSECAG00000017792	PARN	100	86.677	MGP_PahariEiJ_G0016172	Parn	100	86.677	Mus_pahari
ENSECAG00000017792	PARN	100	86.834	MGP_SPRETEiJ_G0021361	Parn	100	86.834	Mus_spretus
ENSECAG00000017792	PARN	100	94.671	ENSMPUG00000014464	PARN	100	94.671	Mustela_putorius_furo
ENSECAG00000017792	PARN	77	94.534	ENSMLUG00000005414	PARN	100	94.534	Myotis_lucifugus
ENSECAG00000017792	PARN	83	75.468	ENSNBRG00000006805	parn	90	75.468	Neolamprologus_brichardi
ENSECAG00000017792	PARN	100	92.645	ENSNLEG00000010241	PARN	100	96.610	Nomascus_leucogenys
ENSECAG00000017792	PARN	99	61.807	ENSMEUG00000008178	-	100	61.807	Notamacropus_eugenii
ENSECAG00000017792	PARN	99	86.212	ENSOPRG00000012187	PARN	100	86.212	Ochotona_princeps
ENSECAG00000017792	PARN	100	80.811	ENSODEG00000001617	PARN	100	80.811	Octodon_degus
ENSECAG00000017792	PARN	100	68.493	ENSONIG00000000151	parn	100	68.493	Oreochromis_niloticus
ENSECAG00000017792	PARN	59	83.421	ENSOANG00000020155	-	97	83.684	Ornithorhynchus_anatinus
ENSECAG00000017792	PARN	99	90.079	ENSOCUG00000000322	PARN	100	90.079	Oryctolagus_cuniculus
ENSECAG00000017792	PARN	91	72.260	ENSORLG00020010313	parn	88	69.836	Oryzias_latipes_hni
ENSECAG00000017792	PARN	91	72.432	ENSORLG00015000300	parn	88	70.000	Oryzias_latipes_hsok
ENSECAG00000017792	PARN	99	66.364	ENSOMEG00000019555	parn	97	65.158	Oryzias_melastigma
ENSECAG00000017792	PARN	77	92.525	ENSOGAG00000014626	PARN	100	92.525	Otolemur_garnettii
ENSECAG00000017792	PARN	77	97.368	ENSOARG00000007574	PARN	100	97.368	Ovis_aries
ENSECAG00000017792	PARN	100	92.332	ENSPPAG00000031438	PARN	100	96.610	Pan_paniscus
ENSECAG00000017792	PARN	100	94.514	ENSPPRG00000018583	PARN	100	96.610	Panthera_pardus
ENSECAG00000017792	PARN	100	94.514	ENSPTIG00000012135	PARN	100	96.610	Panthera_tigris_altaica
ENSECAG00000017792	PARN	100	92.332	ENSPTRG00000007792	PARN	100	96.610	Pan_troglodytes
ENSECAG00000017792	PARN	100	89.984	ENSPANG00000020099	PARN	100	96.610	Papio_anubis
ENSECAG00000017792	PARN	91	73.875	ENSPKIG00000022807	parn	84	72.963	Paramormyrops_kingsleyae
ENSECAG00000017792	PARN	99	82.567	ENSPSIG00000014804	PARN	100	82.496	Pelodiscus_sinensis
ENSECAG00000017792	PARN	86	72.563	ENSPMGG00000014431	parn	77	73.056	Periophthalmus_magnuspinnatus
ENSECAG00000017792	PARN	100	83.699	ENSPEMG00000018439	Parn	100	83.699	Peromyscus_maniculatus_bairdii
ENSECAG00000017792	PARN	82	66.412	ENSPMAG00000003956	parn	99	66.667	Petromyzon_marinus
ENSECAG00000017792	PARN	66	85.816	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
ENSECAG00000017792	PARN	90	72.806	ENSPFOG00000012823	parn	83	72.727	Poecilia_formosa
ENSECAG00000017792	PARN	90	72.978	ENSPLAG00000006395	parn	83	72.899	Poecilia_latipinna
ENSECAG00000017792	PARN	90	72.978	ENSPMEG00000007711	parn	84	72.449	Poecilia_mexicana
ENSECAG00000017792	PARN	90	72.633	ENSPREG00000000147	parn	84	72.109	Poecilia_reticulata
ENSECAG00000017792	PARN	100	92.044	ENSPPYG00000007123	PARN	100	92.044	Pongo_abelii
ENSECAG00000017792	PARN	95	82.314	ENSPCAG00000001741	PARN	100	82.314	Procavia_capensis
ENSECAG00000017792	PARN	100	90.909	ENSPCOG00000019292	PARN	100	98.305	Propithecus_coquereli
ENSECAG00000017792	PARN	99	90.808	ENSPVAG00000002547	PARN	100	90.808	Pteropus_vampyrus
ENSECAG00000017792	PARN	97	68.955	ENSPNYG00000006835	parn	90	72.998	Pundamilia_nyererei
ENSECAG00000017792	PARN	83	74.004	ENSPNAG00000018905	parn	84	74.004	Pygocentrus_nattereri
ENSECAG00000017792	PARN	100	84.146	ENSRNOG00000002912	Parn	98	88.889	Rattus_norvegicus
ENSECAG00000017792	PARN	52	89.790	ENSRBIG00000018726	PARN	100	89.790	Rhinopithecus_bieti
ENSECAG00000017792	PARN	52	89.790	ENSRROG00000011162	-	100	89.790	Rhinopithecus_roxellana
ENSECAG00000017792	PARN	100	91.080	ENSSBOG00000034726	PARN	100	96.610	Saimiri_boliviensis_boliviensis
ENSECAG00000017792	PARN	66	92.584	ENSSHAG00000008493	PARN	94	92.584	Sarcophilus_harrisii
ENSECAG00000017792	PARN	96	72.712	ENSSFOG00015014165	parn	92	73.739	Scleropages_formosus
ENSECAG00000017792	PARN	100	62.558	ENSSMAG00000000685	parn	100	62.404	Scophthalmus_maximus
ENSECAG00000017792	PARN	90	72.432	ENSSDUG00000014555	parn	83	72.774	Seriola_dumerili
ENSECAG00000017792	PARN	81	94.700	ENSSARG00000014339	PARN	89	94.700	Sorex_araneus
ENSECAG00000017792	PARN	100	83.699	ENSSPUG00000007719	PARN	100	83.699	Sphenodon_punctatus
ENSECAG00000017792	PARN	100	65.839	ENSSPAG00000007095	parn	100	65.839	Stegastes_partitus
ENSECAG00000017792	PARN	100	93.887	ENSSSCG00000007878	PARN	89	93.887	Sus_scrofa
ENSECAG00000017792	PARN	55	30.556	ENSTGUG00000011418	PNLDC1	68	30.556	Taeniopygia_guttata
ENSECAG00000017792	PARN	99	82.148	ENSTGUG00000004971	PARN	99	82.148	Taeniopygia_guttata
ENSECAG00000017792	PARN	100	68.421	ENSTNIG00000008252	parn	100	68.421	Tetraodon_nigroviridis
ENSECAG00000017792	PARN	91	79.102	ENSTBEG00000010407	PARN	100	79.102	Tupaia_belangeri
ENSECAG00000017792	PARN	99	89.699	ENSTTRG00000002843	PARN	100	89.699	Tursiops_truncatus
ENSECAG00000017792	PARN	73	78.587	ENSUAMG00000008283	PARN	96	78.587	Ursus_americanus
ENSECAG00000017792	PARN	100	93.574	ENSUMAG00000004527	PARN	100	93.574	Ursus_maritimus
ENSECAG00000017792	PARN	96	90.879	ENSVPAG00000008968	PARN	100	90.879	Vicugna_pacos
ENSECAG00000017792	PARN	100	94.201	ENSVVUG00000019509	PARN	100	94.201	Vulpes_vulpes
ENSECAG00000017792	PARN	100	74.062	ENSXETG00000010994	parn	100	82.129	Xenopus_tropicalis
ENSECAG00000017792	PARN	90	69.483	ENSXCOG00000015990	parn	96	69.048	Xiphophorus_couchianus
ENSECAG00000017792	PARN	91	72.635	ENSXMAG00000014783	parn	84	72.635	Xiphophorus_maculatus