EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000018485 (Gene tree)
Gene ID: 100072997
Gene Symbol: POLR2A
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 25644 bases
Position: chr11:50794067-50819710
Accession: 21673
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000016572	RNA_pol_Rpb1_5	PF04998.17	1.1e-100	1	1
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	1	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	2	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	3	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	4	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	5	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	6	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	7	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	8	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	9	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	10	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	11	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	12	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	13	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	14	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	15	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	16	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	17	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	18	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	19	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	20	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	21	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	22	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	23	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	24	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	25	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	26	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	27	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	28	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	29	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	30	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	31	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	32	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	33	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	34	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	35	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	36	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	37	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	38	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	39	40
ENSECAP00000016572	RNA_pol_Rpb1_R	PF05001.13	5.4e-27	40	40
ENSECAP00000016572	RNA_pol_Rpb1_4	PF05000.17	6.3e-38	1	1
ENSECAP00000016572	RNA_pol_Rpb1_2	PF00623.20	2e-74	1	1
ENSECAP00000016572	RNA_pol_Rpb1_3	PF04983.18	1.5e-49	1	1
ENSECAP00000016572	RNA_pol_Rpb1_1	PF04997.12	9.5e-109	1	1
ENSECAP00000016572	RNA_pol_Rpb1_7	PF04990.12	3.6e-54	1	1
ENSECAP00000016572	RNA_pol_Rpb1_6	PF04992.14	2.5e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000020203	-	6361	XM_014728559	ENSECAP00000016572	1970 (aa)	XP_014584045	F6Z7Q4

Gene Model

Click here to download ENSECAG00000018485's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03020	RNA polymerase	KEGG
ecb05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000018485's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000018485	POLR2A	65	38.300	ENSECAG00000019416	POLR3A	92	38.158
ENSECAG00000018485	POLR2A	63	39.552	ENSECAG00000036306	-	79	39.552
ENSECAG00000018485	POLR2A	63	39.552	ENSECAG00000030510	-	80	39.552
ENSECAG00000018485	POLR2A	63	39.552	ENSECAG00000010092	POLR1A	79	39.552

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000018485	POLR2A	82	94.482	ENSAPOG00000006552	polr2a	91	94.475	Acanthochromis_polyacanthus
ENSECAG00000018485	POLR2A	100	99.645	ENSAMEG00000016265	-	100	99.645	Ailuropoda_melanoleuca
ENSECAG00000018485	POLR2A	82	92.498	ENSACIG00000015982	polr2a	81	92.489	Amphilophus_citrinellus
ENSECAG00000018485	POLR2A	97	92.436	ENSAOCG00000004255	polr2a	96	92.427	Amphiprion_ocellaris
ENSECAG00000018485	POLR2A	82	94.544	ENSAPEG00000012623	polr2a	82	94.538	Amphiprion_percula
ENSECAG00000018485	POLR2A	82	94.420	ENSATEG00000019644	polr2a	82	94.413	Anabas_testudineus
ENSECAG00000018485	POLR2A	100	98.376	ENSACAG00000014561	POLR2A	100	98.376	Anolis_carolinensis
ENSECAG00000018485	POLR2A	100	99.949	ENSANAG00000020093	-	100	99.949	Aotus_nancymaae
ENSECAG00000018485	POLR2A	82	94.234	ENSACLG00000006735	polr2a	82	94.227	Astatotilapia_calliptera
ENSECAG00000018485	POLR2A	82	94.792	ENSAMXG00000020046	polr2a	82	94.786	Astyanax_mexicanus
ENSECAG00000018485	POLR2A	100	99.898	ENSBTAG00000046765	POLR2A	100	99.898	Bos_taurus
ENSECAG00000018485	POLR2A	94	70.025	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSECAG00000018485	POLR2A	100	99.492	ENSCAFG00000016532	POLR2A	100	99.665	Canis_familiaris
ENSECAG00000018485	POLR2A	100	98.985	ENSCAFG00020007929	-	100	98.985	Canis_lupus_dingo
ENSECAG00000018485	POLR2A	100	99.898	ENSCHIG00000027173	-	100	99.898	Capra_hircus
ENSECAG00000018485	POLR2A	100	97.513	ENSTSYG00000012803	-	100	98.020	Carlito_syrichta
ENSECAG00000018485	POLR2A	98	95.553	ENSCAPG00000001882	-	98	98.480	Cavia_aperea
ENSECAG00000018485	POLR2A	100	95.628	ENSCPOG00000014812	-	98	98.509	Cavia_porcellus
ENSECAG00000018485	POLR2A	100	99.949	ENSCCAG00000020938	-	100	99.949	Cebus_capucinus
ENSECAG00000018485	POLR2A	100	99.898	ENSCATG00000013680	-	100	99.898	Cercocebus_atys
ENSECAG00000018485	POLR2A	100	99.797	ENSCLAG00000012196	-	100	99.797	Chinchilla_lanigera
ENSECAG00000018485	POLR2A	82	90.685	ENSCSAG00000011644	-	82	90.685	Chlorocebus_sabaeus
ENSECAG00000018485	POLR2A	100	93.909	ENSCPBG00000012697	POLR2A	100	93.909	Chrysemys_picta_bellii
ENSECAG00000018485	POLR2A	99	76.428	ENSCING00000007884	-	99	76.689	Ciona_intestinalis
ENSECAG00000018485	POLR2A	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSECAG00000018485	POLR2A	100	99.239	ENSCANG00000010622	-	100	99.239	Colobus_angolensis_palliatus
ENSECAG00000018485	POLR2A	100	94.310	ENSCGRG00001003538	Polr2a	100	94.612	Cricetulus_griseus_chok1gshd
ENSECAG00000018485	POLR2A	96	95.440	ENSCGRG00000012105	Polr2a	95	96.012	Cricetulus_griseus_crigri
ENSECAG00000018485	POLR2A	82	93.800	ENSCSEG00000002635	polr2a	82	93.793	Cynoglossus_semilaevis
ENSECAG00000018485	POLR2A	82	94.668	ENSCVAG00000005156	polr2a	82	94.662	Cyprinodon_variegatus
ENSECAG00000018485	POLR2A	82	94.486	ENSDARG00000099966	polr2a	82	94.479	Danio_rerio
ENSECAG00000018485	POLR2A	100	96.954	ENSDNOG00000016482	-	100	96.954	Dasypus_novemcinctus
ENSECAG00000018485	POLR2A	100	99.949	ENSDORG00000008667	Polr2a	100	99.949	Dipodomys_ordii
ENSECAG00000018485	POLR2A	99	69.995	FBgn0003277	RpII215	99	74.828	Drosophila_melanogaster
ENSECAG00000018485	POLR2A	94	88.097	ENSETEG00000002540	-	94	84.711	Echinops_telfairi
ENSECAG00000018485	POLR2A	81	87.960	ENSEBUG00000013967	polr2a	82	87.368	Eptatretus_burgeri
ENSECAG00000018485	POLR2A	100	97.005	ENSEASG00005019114	-	100	97.107	Equus_asinus_asinus
ENSECAG00000018485	POLR2A	87	99.800	ENSEEUG00000001154	-	95	99.800	Erinaceus_europaeus
ENSECAG00000018485	POLR2A	89	90.018	ENSELUG00000014284	polr2a	84	90.685	Esox_lucius
ENSECAG00000018485	POLR2A	100	99.898	ENSFDAG00000008287	-	100	99.898	Fukomys_damarensis
ENSECAG00000018485	POLR2A	85	94.668	ENSFHEG00000001768	polr2a	98	94.662	Fundulus_heteroclitus
ENSECAG00000018485	POLR2A	99	90.361	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSECAG00000018485	POLR2A	99	94.366	ENSGAFG00000005389	polr2a	99	92.427	Gambusia_affinis
ENSECAG00000018485	POLR2A	99	90.750	ENSGACG00000019366	polr2a	100	88.249	Gasterosteus_aculeatus
ENSECAG00000018485	POLR2A	100	98.126	ENSGGOG00000014800	-	100	98.126	Gorilla_gorilla
ENSECAG00000018485	POLR2A	85	94.234	ENSHBUG00000018937	polr2a	99	94.227	Haplochromis_burtoni
ENSECAG00000018485	POLR2A	100	99.898	ENSHGLG00000012381	POLR2A	100	99.898	Heterocephalus_glaber_female
ENSECAG00000018485	POLR2A	100	99.898	ENSHGLG00100014843	POLR2A	100	99.898	Heterocephalus_glaber_male
ENSECAG00000018485	POLR2A	82	93.924	ENSHCOG00000011874	polr2a	82	93.917	Hippocampus_comes
ENSECAG00000018485	POLR2A	82	94.172	ENSIPUG00000002613	Polr2a	82	94.165	Ictalurus_punctatus
ENSECAG00000018485	POLR2A	100	99.949	ENSSTOG00000001304	-	100	99.949	Ictidomys_tridecemlineatus
ENSECAG00000018485	POLR2A	100	99.848	ENSJJAG00000013049	Polr2a	100	99.848	Jaculus_jaculus
ENSECAG00000018485	POLR2A	80	85.355	ENSKMAG00000016343	polr2a	85	85.607	Kryptolebias_marmoratus
ENSECAG00000018485	POLR2A	82	94.172	ENSLBEG00000027652	polr2a	82	94.165	Labrus_bergylta
ENSECAG00000018485	POLR2A	80	87.034	ENSLACG00000012071	POLR2A	81	87.089	Latimeria_chalumnae
ENSECAG00000018485	POLR2A	91	94.777	ENSLOCG00000013863	polr2a	99	94.472	Lepisosteus_oculatus
ENSECAG00000018485	POLR2A	100	99.949	ENSLAFG00000008626	-	100	99.949	Loxodonta_africana
ENSECAG00000018485	POLR2A	50	98.366	ENSMFAG00000007042	-	99	98.366	Macaca_fascicularis
ENSECAG00000018485	POLR2A	100	99.898	ENSMMUG00000023620	-	100	99.898	Macaca_mulatta
ENSECAG00000018485	POLR2A	100	99.191	ENSMNEG00000040407	-	100	99.191	Macaca_nemestrina
ENSECAG00000018485	POLR2A	99	94.972	ENSMLEG00000030263	-	99	98.366	Mandrillus_leucophaeus
ENSECAG00000018485	POLR2A	82	94.296	ENSMAMG00000003351	polr2a	82	94.289	Mastacembelus_armatus
ENSECAG00000018485	POLR2A	82	94.234	ENSMZEG00005021429	polr2a	82	94.227	Maylandia_zebra
ENSECAG00000018485	POLR2A	50	100.000	ENSMAUG00000021055	-	99	100.000	Mesocricetus_auratus
ENSECAG00000018485	POLR2A	100	99.848	ENSMICG00000013372	-	100	99.848	Microcebus_murinus
ENSECAG00000018485	POLR2A	100	93.221	ENSMOCG00000018279	Polr2a	100	93.426	Microtus_ochrogaster
ENSECAG00000018485	POLR2A	87	93.800	ENSMMOG00000012515	polr2a	95	93.793	Mola_mola
ENSECAG00000018485	POLR2A	100	99.492	ENSMODG00000007009	-	100	99.492	Monodelphis_domestica
ENSECAG00000018485	POLR2A	94	91.708	ENSMALG00000008716	polr2a	99	92.365	Monopterus_albus
ENSECAG00000018485	POLR2A	100	99.898	MGP_CAROLIEiJ_G0016587	Polr2a	100	99.898	Mus_caroli
ENSECAG00000018485	POLR2A	100	99.898	ENSMUSG00000005198	Polr2a	100	99.898	Mus_musculus
ENSECAG00000018485	POLR2A	100	98.128	MGP_PahariEiJ_G0017718	Polr2a	100	98.128	Mus_pahari
ENSECAG00000018485	POLR2A	100	99.898	MGP_SPRETEiJ_G0017423	Polr2a	100	99.898	Mus_spretus
ENSECAG00000018485	POLR2A	100	99.848	ENSMPUG00000009648	-	100	99.848	Mustela_putorius_furo
ENSECAG00000018485	POLR2A	100	99.442	ENSMLUG00000009088	-	100	99.442	Myotis_lucifugus
ENSECAG00000018485	POLR2A	100	99.949	ENSNGAG00000002543	Polr2a	100	99.949	Nannospalax_galili
ENSECAG00000018485	POLR2A	82	92.188	ENSNBRG00000002005	polr2a	81	92.179	Neolamprologus_brichardi
ENSECAG00000018485	POLR2A	100	98.734	ENSNLEG00000009460	-	100	98.734	Nomascus_leucogenys
ENSECAG00000018485	POLR2A	94	99.455	ENSMEUG00000008611	-	93	99.455	Notamacropus_eugenii
ENSECAG00000018485	POLR2A	80	99.684	ENSOPRG00000015116	-	99	99.684	Ochotona_princeps
ENSECAG00000018485	POLR2A	100	92.499	ENSODEG00000017674	-	100	95.178	Octodon_degus
ENSECAG00000018485	POLR2A	82	94.420	ENSONIG00000009231	polr2a	82	94.413	Oreochromis_niloticus
ENSECAG00000018485	POLR2A	100	97.362	ENSOCUG00000017929	-	100	97.710	Oryctolagus_cuniculus
ENSECAG00000018485	POLR2A	82	94.296	ENSORLG00000006431	polr2a	82	94.289	Oryzias_latipes
ENSECAG00000018485	POLR2A	82	94.296	ENSORLG00020010235	polr2a	82	94.289	Oryzias_latipes_hni
ENSECAG00000018485	POLR2A	82	94.296	ENSORLG00015007075	polr2a	82	94.289	Oryzias_latipes_hsok
ENSECAG00000018485	POLR2A	92	94.406	ENSOMEG00000010713	polr2a	100	94.406	Oryzias_melastigma
ENSECAG00000018485	POLR2A	100	99.797	ENSOGAG00000033608	-	100	99.797	Otolemur_garnettii
ENSECAG00000018485	POLR2A	98	99.735	ENSOARG00000013874	-	100	99.735	Ovis_aries
ENSECAG00000018485	POLR2A	100	96.904	ENSPPAG00000043734	-	100	97.411	Pan_paniscus
ENSECAG00000018485	POLR2A	100	98.734	ENSPTRG00000008691	POLR2A	100	98.734	Pan_troglodytes
ENSECAG00000018485	POLR2A	100	99.239	ENSPANG00000024099	-	100	99.239	Papio_anubis
ENSECAG00000018485	POLR2A	77	92.793	ENSPKIG00000005727	polr2a	85	82.000	Paramormyrops_kingsleyae
ENSECAG00000018485	POLR2A	98	96.418	ENSPSIG00000014006	POLR2A	100	96.418	Pelodiscus_sinensis
ENSECAG00000018485	POLR2A	100	94.225	ENSPMGG00000019734	polr2a	99	94.662	Periophthalmus_magnuspinnatus
ENSECAG00000018485	POLR2A	100	99.949	ENSPEMG00000012521	Polr2a	100	99.949	Peromyscus_maniculatus_bairdii
ENSECAG00000018485	POLR2A	96	87.257	ENSPCIG00000028851	-	96	87.257	Phascolarctos_cinereus
ENSECAG00000018485	POLR2A	85	94.606	ENSPFOG00000007890	polr2a	99	94.600	Poecilia_formosa
ENSECAG00000018485	POLR2A	85	94.606	ENSPLAG00000007399	polr2a	99	94.600	Poecilia_latipinna
ENSECAG00000018485	POLR2A	85	94.606	ENSPMEG00000002071	polr2a	99	94.600	Poecilia_mexicana
ENSECAG00000018485	POLR2A	82	94.544	ENSPREG00000013122	polr2a	82	94.538	Poecilia_reticulata
ENSECAG00000018485	POLR2A	100	96.755	ENSPPYG00000007924	-	100	98.884	Pongo_abelii
ENSECAG00000018485	POLR2A	92	99.868	ENSPCAG00000006951	-	92	99.868	Procavia_capensis
ENSECAG00000018485	POLR2A	100	98.791	ENSPCOG00000025260	-	100	98.791	Propithecus_coquereli
ENSECAG00000018485	POLR2A	100	99.695	ENSPVAG00000005069	-	100	99.695	Pteropus_vampyrus
ENSECAG00000018485	POLR2A	83	94.499	ENSPNYG00000022340	polr2a	82	94.289	Pundamilia_nyererei
ENSECAG00000018485	POLR2A	82	94.606	ENSPNAG00000011237	polr2a	82	94.600	Pygocentrus_nattereri
ENSECAG00000018485	POLR2A	100	99.848	ENSRNOG00000028834	Polr2a	100	99.848	Rattus_norvegicus
ENSECAG00000018485	POLR2A	82	99.503	ENSRBIG00000002471	-	100	96.548	Rhinopithecus_bieti
ENSECAG00000018485	POLR2A	100	99.543	ENSRROG00000029583	-	100	99.543	Rhinopithecus_roxellana
ENSECAG00000018485	POLR2A	82	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSECAG00000018485	POLR2A	100	99.949	ENSSBOG00000000808	-	100	99.949	Saimiri_boliviensis_boliviensis
ENSECAG00000018485	POLR2A	92	99.379	ENSSHAG00000002858	-	84	99.379	Sarcophilus_harrisii
ENSECAG00000018485	POLR2A	82	94.544	ENSSFOG00015023275	polr2a	82	94.538	Scleropages_formosus
ENSECAG00000018485	POLR2A	82	93.924	ENSSMAG00000009137	polr2a	82	93.917	Scophthalmus_maximus
ENSECAG00000018485	POLR2A	82	94.420	ENSSDUG00000020466	polr2a	82	94.413	Seriola_dumerili
ENSECAG00000018485	POLR2A	82	94.420	ENSSLDG00000020613	polr2a	82	94.413	Seriola_lalandi_dorsalis
ENSECAG00000018485	POLR2A	97	94.976	ENSSARG00000005875	-	99	94.976	Sorex_araneus
ENSECAG00000018485	POLR2A	100	94.482	ENSSPAG00000016741	polr2a	94	94.475	Stegastes_partitus
ENSECAG00000018485	POLR2A	100	99.188	ENSSSCG00000028278	-	100	99.188	Sus_scrofa
ENSECAG00000018485	POLR2A	99	88.600	ENSTRUG00000012320	polr2a	81	88.586	Takifugu_rubripes
ENSECAG00000018485	POLR2A	99	92.932	ENSTNIG00000010136	polr2a	100	92.924	Tetraodon_nigroviridis
ENSECAG00000018485	POLR2A	74	100.000	ENSTBEG00000013294	-	58	100.000	Tupaia_belangeri
ENSECAG00000018485	POLR2A	100	98.376	ENSTTRG00000014273	-	100	98.376	Tursiops_truncatus
ENSECAG00000018485	POLR2A	96	96.904	ENSUAMG00000014866	-	100	99.505	Ursus_americanus
ENSECAG00000018485	POLR2A	99	97.325	ENSUMAG00000015732	-	100	97.325	Ursus_maritimus
ENSECAG00000018485	POLR2A	65	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSECAG00000018485	POLR2A	100	96.553	ENSVVUG00000027878	-	100	98.477	Vulpes_vulpes
ENSECAG00000018485	POLR2A	99	96.920	ENSXETG00000012465	polr2a	100	96.920	Xenopus_tropicalis
ENSECAG00000018485	POLR2A	89	92.374	ENSXCOG00000001804	polr2a	94	92.365	Xiphophorus_couchianus
ENSECAG00000018485	POLR2A	82	94.544	ENSXMAG00000015687	polr2a	82	94.538	Xiphophorus_maculatus