EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000020248 (Gene tree)
Gene ID: 100146840
Gene Symbol: -
Alias: -
Full Name: chromosome 11 C17orf47 homolog
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 27063 bases
Position: chr11:33023939-33051001
Accession: 100146840
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000034356	MMR_HSR1	PF01926.23	1.7e-07	1	1
ENSECAP00000037924	MMR_HSR1	PF01926.23	3.4e-07	1	1
ENSECAP00000028656	MMR_HSR1	PF01926.23	3.8e-07	1	1
ENSECAP00000018139	MMR_HSR1	PF01926.23	6.1e-07	1	1
ENSECAP00000029438	MMR_HSR1	PF01926.23	6.4e-07	1	1
ENSECAP00000020694	MMR_HSR1	PF01926.23	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000021975	-	1434	-	ENSECAP00000018139	477 (aa)	XP_023508663	F6UN58
ENSECAT00000061180	-	1140	-	ENSECAP00000028656	379 (aa)	-	-
ENSECAT00000024888	-	3060	XM_023652890	ENSECAP00000020694	1019 (aa)	XP_023508658	F6V1K1
ENSECAT00000032602	-	693	-	ENSECAP00000034356	230 (aa)	-	-
ENSECAT00000038716	-	201	-	ENSECAP00000028435	66 (aa)	-	-
ENSECAT00000061430	-	450	-	ENSECAP00000029438	149 (aa)	-	-
ENSECAT00000046205	-	1008	-	ENSECAP00000037924	335 (aa)	-	-

Gene Model

Click here to download ENSECAG00000020248's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb04210	Apoptosis	KEGG
ecb04215	Apoptosis - multiple species	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000020248's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000020248	-	96	69.444	ENSECAG00000009390	SEPT1	93	65.278
ENSECAG00000020248	-	93	42.857	ENSECAG00000005768	SEPT11	66	43.537
ENSECAG00000020248	-	95	89.510	ENSECAG00000020718	-	68	76.902
ENSECAG00000020248	-	95	62.937	ENSECAG00000022693	SEPT7	72	58.442
ENSECAG00000020248	-	93	52.482	ENSECAG00000020246	SEPT9	67	44.681
ENSECAG00000020248	-	93	41.429	ENSECAG00000014530	SEPT10	69	40.385
ENSECAG00000020248	-	93	44.681	ENSECAG00000018692	SEPT12	82	42.633
ENSECAG00000020248	-	96	68.750	ENSECAG00000017553	SEPT2	91	60.511
ENSECAG00000020248	-	98	47.788	ENSECAG00000023601	SEPT3	90	49.216
ENSECAG00000020248	-	93	40.714	ENSECAG00000017362	SEPT14	74	41.639

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000020248	-	96	100.000	ENSCAFG00000017532	SEPT4	99	100.000	Canis_familiaris
ENSECAG00000020248	-	100	97.361	ENSCATG00000032851	-	100	97.361	Cercocebus_atys
ENSECAG00000020248	-	100	97.098	ENSGGOG00000013814	-	100	97.098	Gorilla_gorilla
ENSECAG00000020248	-	100	97.361	ENSMFAG00000038431	SEPT4	100	97.361	Macaca_fascicularis
ENSECAG00000020248	-	100	97.361	ENSMMUG00000008423	-	100	97.361	Macaca_mulatta
ENSECAG00000020248	-	100	97.361	ENSMNEG00000036497	-	100	97.361	Macaca_nemestrina
ENSECAG00000020248	-	100	97.361	ENSMLEG00000026740	-	100	98.023	Mandrillus_leucophaeus
ENSECAG00000020248	-	96	100.000	ENSMPUG00000015285	-	100	81.845	Mustela_putorius_furo
ENSECAG00000020248	-	100	97.361	ENSNLEG00000008245	-	100	97.361	Nomascus_leucogenys
ENSECAG00000020248	-	96	98.182	ENSOARG00000010822	-	100	77.549	Ovis_aries
ENSECAG00000020248	-	100	97.098	ENSPPAG00000028255	-	100	97.098	Pan_paniscus
ENSECAG00000020248	-	100	97.098	ENSPTRG00000009455	SEPT4	100	97.098	Pan_troglodytes