EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000022209 (Gene tree)
Gene ID: 100063277
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 17362 bases
Position: chr9:85143103-85160464
Accession: 16833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000020101	CPSF_A	PF03178.15	4.6e-92	1	1
ENSECAP00000020132	CPSF_A	PF03178.15	1.7e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000024206	-	4349	XM_001504997	ENSECAP00000020101	1444 (aa)	XP_001505047	F6U2K6
ENSECAT00000024239	-	4665	-	ENSECAP00000020132	1554 (aa)	-	F6U1U0

Gene Model

Click here to download ENSECAG00000022209's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000022209's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000022209	CPSF1	100	97.165	ENSG00000071894	CPSF1	100	97.165	Homo_sapiens
ENSECAG00000022209	CPSF1	100	78.003	ENSAPOG00000019621	cpsf1	100	77.800	Acanthochromis_polyacanthus
ENSECAG00000022209	CPSF1	97	96.855	ENSAMEG00000005557	CPSF1	100	96.855	Ailuropoda_melanoleuca
ENSECAG00000022209	CPSF1	100	78.162	ENSACIG00000006112	cpsf1	100	78.231	Amphilophus_citrinellus
ENSECAG00000022209	CPSF1	100	79.353	ENSAOCG00000007120	cpsf1	100	79.215	Amphiprion_ocellaris
ENSECAG00000022209	CPSF1	100	79.574	ENSAPEG00000005755	cpsf1	100	79.574	Amphiprion_percula
ENSECAG00000022209	CPSF1	100	77.658	ENSATEG00000011097	cpsf1	100	77.860	Anabas_testudineus
ENSECAG00000022209	CPSF1	93	82.244	ENSACAG00000009655	CPSF1	100	82.244	Anolis_carolinensis
ENSECAG00000022209	CPSF1	100	97.024	ENSANAG00000036514	CPSF1	100	97.024	Aotus_nancymaae
ENSECAG00000022209	CPSF1	100	77.402	ENSACLG00000012231	cpsf1	99	78.632	Astatotilapia_calliptera
ENSECAG00000022209	CPSF1	100	74.120	ENSAMXG00000008485	cpsf1	100	74.189	Astyanax_mexicanus
ENSECAG00000022209	CPSF1	100	95.779	ENSBTAG00000008355	CPSF1	100	95.821	Bos_taurus
ENSECAG00000022209	CPSF1	100	31.911	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSECAG00000022209	CPSF1	100	96.955	ENSCJAG00000021421	CPSF1	100	96.955	Callithrix_jacchus
ENSECAG00000022209	CPSF1	97	98.212	ENSCAFG00000001600	CPSF1	100	98.374	Canis_familiaris
ENSECAG00000022209	CPSF1	100	98.407	ENSCAFG00020020821	CPSF1	100	98.407	Canis_lupus_dingo
ENSECAG00000022209	CPSF1	100	92.138	ENSCHIG00000015833	CPSF1	100	92.138	Capra_hircus
ENSECAG00000022209	CPSF1	100	97.509	ENSTSYG00000028560	CPSF1	100	97.509	Carlito_syrichta
ENSECAG00000022209	CPSF1	97	95.848	ENSCAPG00000014921	CPSF1	99	96.040	Cavia_aperea
ENSECAG00000022209	CPSF1	100	95.433	ENSCPOG00000011448	CPSF1	100	95.433	Cavia_porcellus
ENSECAG00000022209	CPSF1	100	97.024	ENSCCAG00000037658	CPSF1	100	97.024	Cebus_capucinus
ENSECAG00000022209	CPSF1	100	96.886	ENSCATG00000037234	CPSF1	100	96.886	Cercocebus_atys
ENSECAG00000022209	CPSF1	100	97.299	ENSCLAG00000012166	CPSF1	100	97.299	Chinchilla_lanigera
ENSECAG00000022209	CPSF1	100	96.955	ENSCSAG00000008502	CPSF1	100	96.955	Chlorocebus_sabaeus
ENSECAG00000022209	CPSF1	99	87.980	ENSCPBG00000018910	CPSF1	96	87.980	Chrysemys_picta_bellii
ENSECAG00000022209	CPSF1	96	48.108	ENSCING00000000514	-	100	48.037	Ciona_intestinalis
ENSECAG00000022209	CPSF1	99	48.047	ENSCSAVG00000002293	-	99	49.302	Ciona_savignyi
ENSECAG00000022209	CPSF1	99	91.760	ENSCANG00000032760	CPSF1	99	91.760	Colobus_angolensis_palliatus
ENSECAG00000022209	CPSF1	100	96.607	ENSCGRG00001016344	Cpsf1	100	96.607	Cricetulus_griseus_chok1gshd
ENSECAG00000022209	CPSF1	100	94.460	ENSCGRG00000003118	Cpsf1	100	94.460	Cricetulus_griseus_crigri
ENSECAG00000022209	CPSF1	100	77.678	ENSCSEG00000013464	cpsf1	100	77.609	Cynoglossus_semilaevis
ENSECAG00000022209	CPSF1	85	77.309	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSECAG00000022209	CPSF1	100	79.436	ENSDARG00000034178	cpsf1	100	79.574	Danio_rerio
ENSECAG00000022209	CPSF1	68	97.101	ENSDNOG00000043654	CPSF1	94	97.101	Dasypus_novemcinctus
ENSECAG00000022209	CPSF1	97	96.557	ENSDORG00000006278	Cpsf1	99	96.828	Dipodomys_ordii
ENSECAG00000022209	CPSF1	100	45.222	FBgn0024698	Cpsf160	100	45.332	Drosophila_melanogaster
ENSECAG00000022209	CPSF1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
ENSECAG00000022209	CPSF1	100	99.861	ENSEASG00005010774	CPSF1	100	99.861	Equus_asinus_asinus
ENSECAG00000022209	CPSF1	100	96.055	ENSEEUG00000000471	CPSF1	100	96.055	Erinaceus_europaeus
ENSECAG00000022209	CPSF1	100	78.112	ENSELUG00000012271	cpsf1	100	78.659	Esox_lucius
ENSECAG00000022209	CPSF1	100	97.161	ENSFDAG00000016060	CPSF1	100	97.161	Fukomys_damarensis
ENSECAG00000022209	CPSF1	100	77.029	ENSFHEG00000016801	cpsf1	100	76.891	Fundulus_heteroclitus
ENSECAG00000022209	CPSF1	100	78.045	ENSGMOG00000000796	cpsf1	100	78.183	Gadus_morhua
ENSECAG00000022209	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSECAG00000022209	CPSF1	100	78.640	ENSGACG00000008703	cpsf1	100	78.425	Gasterosteus_aculeatus
ENSECAG00000022209	CPSF1	100	84.392	ENSGAGG00000004276	CPSF1	98	88.161	Gopherus_agassizii
ENSECAG00000022209	CPSF1	100	97.299	ENSGGOG00000016185	CPSF1	100	97.299	Gorilla_gorilla
ENSECAG00000022209	CPSF1	100	79.544	ENSHBUG00000018900	cpsf1	100	79.475	Haplochromis_burtoni
ENSECAG00000022209	CPSF1	100	97.161	ENSHGLG00000016139	CPSF1	100	97.161	Heterocephalus_glaber_female
ENSECAG00000022209	CPSF1	100	97.091	ENSHGLG00100009750	CPSF1	100	97.091	Heterocephalus_glaber_male
ENSECAG00000022209	CPSF1	100	76.913	ENSHCOG00000018509	cpsf1	100	77.033	Hippocampus_comes
ENSECAG00000022209	CPSF1	100	76.390	ENSIPUG00000011259	cpsf1	100	76.390	Ictalurus_punctatus
ENSECAG00000022209	CPSF1	97	96.790	ENSSTOG00000009957	CPSF1	99	96.790	Ictidomys_tridecemlineatus
ENSECAG00000022209	CPSF1	100	96.537	ENSJJAG00000023002	Cpsf1	100	96.537	Jaculus_jaculus
ENSECAG00000022209	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSECAG00000022209	CPSF1	100	77.297	ENSLBEG00000003601	cpsf1	100	77.552	Labrus_bergylta
ENSECAG00000022209	CPSF1	88	81.851	ENSLACG00000000233	CPSF1	100	69.136	Latimeria_chalumnae
ENSECAG00000022209	CPSF1	100	78.222	ENSLOCG00000008484	cpsf1	100	78.360	Lepisosteus_oculatus
ENSECAG00000022209	CPSF1	97	96.492	ENSLAFG00000022601	CPSF1	100	96.492	Loxodonta_africana
ENSECAG00000022209	CPSF1	100	96.886	ENSMFAG00000037013	CPSF1	100	96.886	Macaca_fascicularis
ENSECAG00000022209	CPSF1	100	96.955	ENSMMUG00000007380	CPSF1	100	96.955	Macaca_mulatta
ENSECAG00000022209	CPSF1	97	96.994	ENSMNEG00000043564	CPSF1	100	96.994	Macaca_nemestrina
ENSECAG00000022209	CPSF1	100	97.024	ENSMLEG00000043010	CPSF1	100	97.024	Mandrillus_leucophaeus
ENSECAG00000022209	CPSF1	100	77.800	ENSMAMG00000003803	cpsf1	100	78.273	Mastacembelus_armatus
ENSECAG00000022209	CPSF1	100	77.540	ENSMZEG00005001168	cpsf1	100	77.471	Maylandia_zebra
ENSECAG00000022209	CPSF1	100	96.537	ENSMAUG00000003601	Cpsf1	100	96.537	Mesocricetus_auratus
ENSECAG00000022209	CPSF1	100	97.715	ENSMICG00000015767	CPSF1	100	97.715	Microcebus_murinus
ENSECAG00000022209	CPSF1	100	96.745	ENSMOCG00000022758	Cpsf1	100	96.745	Microtus_ochrogaster
ENSECAG00000022209	CPSF1	100	78.867	ENSMMOG00000021245	cpsf1	100	78.729	Mola_mola
ENSECAG00000022209	CPSF1	100	94.203	ENSMODG00000010755	CPSF1	100	94.203	Monodelphis_domestica
ENSECAG00000022209	CPSF1	100	77.703	ENSMALG00000020545	cpsf1	100	77.635	Monopterus_albus
ENSECAG00000022209	CPSF1	100	97.161	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.161	Mus_caroli
ENSECAG00000022209	CPSF1	100	97.091	ENSMUSG00000034022	Cpsf1	100	97.091	Mus_musculus
ENSECAG00000022209	CPSF1	100	96.884	MGP_PahariEiJ_G0019946	Cpsf1	100	96.884	Mus_pahari
ENSECAG00000022209	CPSF1	100	97.091	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.091	Mus_spretus
ENSECAG00000022209	CPSF1	93	97.628	ENSMPUG00000006419	CPSF1	93	97.628	Mustela_putorius_furo
ENSECAG00000022209	CPSF1	100	96.676	ENSNGAG00000022460	Cpsf1	100	96.676	Nannospalax_galili
ENSECAG00000022209	CPSF1	100	74.931	ENSNBRG00000000813	cpsf1	100	75.000	Neolamprologus_brichardi
ENSECAG00000022209	CPSF1	86	85.462	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSECAG00000022209	CPSF1	82	98.837	ENSMEUG00000014922	CPSF1	85	98.837	Notamacropus_eugenii
ENSECAG00000022209	CPSF1	60	97.449	ENSOPRG00000004693	-	71	97.449	Ochotona_princeps
ENSECAG00000022209	CPSF1	100	97.438	ENSODEG00000013995	CPSF1	100	97.438	Octodon_degus
ENSECAG00000022209	CPSF1	100	79.889	ENSONIG00000007676	cpsf1	100	79.751	Oreochromis_niloticus
ENSECAG00000022209	CPSF1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSECAG00000022209	CPSF1	100	77.733	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSECAG00000022209	CPSF1	100	77.868	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSECAG00000022209	CPSF1	100	77.883	ENSORLG00015009979	cpsf1	100	77.748	Oryzias_latipes_hsok
ENSECAG00000022209	CPSF1	100	77.634	ENSOMEG00000011849	cpsf1	100	77.566	Oryzias_melastigma
ENSECAG00000022209	CPSF1	100	97.163	ENSOGAG00000000315	CPSF1	100	97.163	Otolemur_garnettii
ENSECAG00000022209	CPSF1	100	97.301	ENSPPAG00000019280	CPSF1	100	97.301	Pan_paniscus
ENSECAG00000022209	CPSF1	100	97.301	ENSPTRG00000049288	-	100	97.301	Pan_troglodytes
ENSECAG00000022209	CPSF1	100	95.646	ENSPTRG00000051253	-	100	95.646	Pan_troglodytes
ENSECAG00000022209	CPSF1	97	96.850	ENSPANG00000015005	CPSF1	100	96.850	Papio_anubis
ENSECAG00000022209	CPSF1	100	80.456	ENSPKIG00000002582	cpsf1	100	81.108	Paramormyrops_kingsleyae
ENSECAG00000022209	CPSF1	100	94.134	ENSPCIG00000009035	CPSF1	100	94.134	Phascolarctos_cinereus
ENSECAG00000022209	CPSF1	100	76.486	ENSPFOG00000012870	cpsf1	100	76.554	Poecilia_formosa
ENSECAG00000022209	CPSF1	100	76.435	ENSPREG00000016307	cpsf1	100	76.300	Poecilia_reticulata
ENSECAG00000022209	CPSF1	100	88.927	ENSPPYG00000018973	CPSF1	100	88.927	Pongo_abelii
ENSECAG00000022209	CPSF1	91	95.455	ENSPCAG00000011541	CPSF1	94	95.455	Procavia_capensis
ENSECAG00000022209	CPSF1	100	93.495	ENSPCOG00000020001	CPSF1	100	93.495	Propithecus_coquereli
ENSECAG00000022209	CPSF1	91	99.429	ENSPVAG00000006761	CPSF1	91	99.429	Pteropus_vampyrus
ENSECAG00000022209	CPSF1	100	78.513	ENSPNYG00000004906	cpsf1	100	78.445	Pundamilia_nyererei
ENSECAG00000022209	CPSF1	100	75.310	ENSPNAG00000024395	cpsf1	100	75.310	Pygocentrus_nattereri
ENSECAG00000022209	CPSF1	100	97.091	ENSRNOG00000030705	Cpsf1	100	97.091	Rattus_norvegicus
ENSECAG00000022209	CPSF1	100	96.955	ENSRBIG00000044907	CPSF1	100	96.955	Rhinopithecus_bieti
ENSECAG00000022209	CPSF1	100	96.886	ENSRROG00000044861	CPSF1	100	96.886	Rhinopithecus_roxellana
ENSECAG00000022209	CPSF1	97	96.994	ENSSBOG00000027177	CPSF1	100	96.994	Saimiri_boliviensis_boliviensis
ENSECAG00000022209	CPSF1	100	94.134	ENSSHAG00000006500	CPSF1	100	94.134	Sarcophilus_harrisii
ENSECAG00000022209	CPSF1	100	78.404	ENSSFOG00015004606	cpsf1	100	81.150	Scleropages_formosus
ENSECAG00000022209	CPSF1	100	78.108	ENSSMAG00000020547	cpsf1	100	78.108	Scophthalmus_maximus
ENSECAG00000022209	CPSF1	100	79.020	ENSSDUG00000001100	cpsf1	100	79.089	Seriola_dumerili
ENSECAG00000022209	CPSF1	100	79.282	ENSSLDG00000003619	cpsf1	100	79.213	Seriola_lalandi_dorsalis
ENSECAG00000022209	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSECAG00000022209	CPSF1	96	88.223	ENSSPUG00000014396	CPSF1	99	88.223	Sphenodon_punctatus
ENSECAG00000022209	CPSF1	100	77.920	ENSSPAG00000005349	cpsf1	100	78.055	Stegastes_partitus
ENSECAG00000022209	CPSF1	100	97.368	ENSSSCG00000005906	CPSF1	100	97.368	Sus_scrofa
ENSECAG00000022209	CPSF1	96	78.331	ENSTRUG00000013134	cpsf1	99	78.261	Takifugu_rubripes
ENSECAG00000022209	CPSF1	100	78.807	ENSTNIG00000014027	cpsf1	100	78.601	Tetraodon_nigroviridis
ENSECAG00000022209	CPSF1	77	89.365	ENSTBEG00000001756	CPSF1	89	94.707	Tupaia_belangeri
ENSECAG00000022209	CPSF1	90	97.927	ENSTTRG00000001937	CPSF1	90	97.927	Tursiops_truncatus
ENSECAG00000022209	CPSF1	97	98.569	ENSUAMG00000006476	CPSF1	98	98.569	Ursus_americanus
ENSECAG00000022209	CPSF1	100	77.486	ENSXCOG00000003608	cpsf1	100	77.486	Xiphophorus_couchianus
ENSECAG00000022209	CPSF1	100	77.034	ENSXMAG00000005798	cpsf1	100	77.034	Xiphophorus_maculatus