EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000023673 (Gene tree)
Gene ID: 100059375
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 84348 bases
Position: chr1:77731464-77815811
Accession: 100059375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000030909	SpoU_methylase	PF00588.19	7.3e-30	1	1
ENSECAP00000027483	SpoU_methylase	PF00588.19	7.9e-30	1	1
ENSECAP00000035563	SpoU_methylase	PF00588.19	7.9e-30	1	1
ENSECAP00000021121	SpoU_methylase	PF00588.19	8.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000030431	TARBP1-204	4575	-	ENSECAP00000030909	1524 (aa)	-	-
ENSECAT00000054177	TARBP1-202	4864	XM_023647324	ENSECAP00000035563	1591 (aa)	XP_023503092	UPI000C9DE360
ENSECAT00000025393	TARBP1-201	4936	XM_023647316	ENSECAP00000021121	1615 (aa)	XP_023503084	F7C877
ENSECAT00000046233	TARBP1-203	4761	XM_023647327	ENSECAP00000027483	1586 (aa)	XP_023503095	UPI000C9DF58B

Gene Model

Click here to download ENSECAG00000023673's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000023673's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000023673	TARBP1	99	88.403	ENSG00000059588	TARBP1	99	87.931	Homo_sapiens
ENSECAG00000023673	TARBP1	90	46.394	ENSAPOG00000016419	si:dkey-85a20.4	88	44.566	Acanthochromis_polyacanthus
ENSECAG00000023673	TARBP1	83	90.323	ENSAMEG00000003359	TARBP1	100	88.840	Ailuropoda_melanoleuca
ENSECAG00000023673	TARBP1	84	46.599	ENSATEG00000020266	si:dkey-85a20.4	85	45.050	Anabas_testudineus
ENSECAG00000023673	TARBP1	84	68.540	ENSAPLG00000007666	TARBP1	99	69.595	Anas_platyrhynchos
ENSECAG00000023673	TARBP1	99	64.000	ENSACAG00000001142	TARBP1	99	59.252	Anolis_carolinensis
ENSECAG00000023673	TARBP1	92	88.074	ENSANAG00000022031	TARBP1	95	88.074	Aotus_nancymaae
ENSECAG00000023673	TARBP1	100	88.035	ENSBTAG00000004517	TARBP1	99	87.647	Bos_taurus
ENSECAG00000023673	TARBP1	99	87.199	ENSCJAG00000018155	TARBP1	99	86.700	Callithrix_jacchus
ENSECAG00000023673	TARBP1	88	88.943	ENSCAFG00000011533	TARBP1	100	89.140	Canis_familiaris
ENSECAG00000023673	TARBP1	100	89.047	ENSCAFG00020027141	TARBP1	100	88.411	Canis_lupus_dingo
ENSECAG00000023673	TARBP1	99	87.211	ENSCHIG00000011437	TARBP1	99	87.093	Capra_hircus
ENSECAG00000023673	TARBP1	80	89.135	ENSTSYG00000010382	TARBP1	99	86.934	Carlito_syrichta
ENSECAG00000023673	TARBP1	78	69.255	ENSCAPG00000010831	TARBP1	99	69.279	Cavia_aperea
ENSECAG00000023673	TARBP1	99	76.852	ENSCPOG00000013995	TARBP1	99	76.975	Cavia_porcellus
ENSECAG00000023673	TARBP1	99	87.459	ENSCCAG00000037278	TARBP1	99	87.069	Cebus_capucinus
ENSECAG00000023673	TARBP1	99	88.184	ENSCATG00000011754	TARBP1	99	87.500	Cercocebus_atys
ENSECAG00000023673	TARBP1	83	85.000	ENSCLAG00000003655	TARBP1	99	85.000	Chinchilla_lanigera
ENSECAG00000023673	TARBP1	79	88.084	ENSCSAG00000010100	TARBP1	99	88.006	Chlorocebus_sabaeus
ENSECAG00000023673	TARBP1	93	71.429	ENSCPBG00000005587	TARBP1	98	66.406	Chrysemys_picta_bellii
ENSECAG00000023673	TARBP1	84	88.041	ENSCANG00000034343	TARBP1	99	88.041	Colobus_angolensis_palliatus
ENSECAG00000023673	TARBP1	99	77.008	ENSCGRG00001016690	Tarbp1	99	75.464	Cricetulus_griseus_chok1gshd
ENSECAG00000023673	TARBP1	89	77.008	ENSCGRG00000016893	Tarbp1	98	77.172	Cricetulus_griseus_crigri
ENSECAG00000023673	TARBP1	97	44.260	ENSCSEG00000005255	si:dkey-85a20.4	99	40.087	Cynoglossus_semilaevis
ENSECAG00000023673	TARBP1	87	45.944	ENSDARG00000079055	si:dkey-85a20.4	99	53.886	Danio_rerio
ENSECAG00000023673	TARBP1	99	88.043	ENSDNOG00000008637	TARBP1	99	85.223	Dasypus_novemcinctus
ENSECAG00000023673	TARBP1	78	81.699	ENSDORG00000007984	Tarbp1	100	75.482	Dipodomys_ordii
ENSECAG00000023673	TARBP1	100	98.878	ENSEASG00005000252	TARBP1	100	98.829	Equus_asinus_asinus
ENSECAG00000023673	TARBP1	85	45.053	ENSELUG00000012193	si:dkey-85a20.4	86	45.053	Esox_lucius
ENSECAG00000023673	TARBP1	100	87.404	ENSFCAG00000014183	TARBP1	100	87.323	Felis_catus
ENSECAG00000023673	TARBP1	79	73.802	ENSFALG00000013565	TARBP1	95	73.802	Ficedula_albicollis
ENSECAG00000023673	TARBP1	78	84.536	ENSFDAG00000001308	TARBP1	97	84.536	Fukomys_damarensis
ENSECAG00000023673	TARBP1	99	38.546	ENSFHEG00000007565	si:dkey-85a20.4	93	53.482	Fundulus_heteroclitus
ENSECAG00000023673	TARBP1	82	45.961	ENSGMOG00000004549	si:dkey-85a20.4	98	43.750	Gadus_morhua
ENSECAG00000023673	TARBP1	96	65.191	ENSGALG00000011000	TARBP1	99	64.889	Gallus_gallus
ENSECAG00000023673	TARBP1	99	46.389	ENSGAFG00000007387	si:dkey-85a20.4	85	45.085	Gambusia_affinis
ENSECAG00000023673	TARBP1	84	46.835	ENSGACG00000005865	si:dkey-85a20.4	99	45.152	Gasterosteus_aculeatus
ENSECAG00000023673	TARBP1	92	73.875	ENSGAGG00000012102	TARBP1	95	73.319	Gopherus_agassizii
ENSECAG00000023673	TARBP1	84	89.067	ENSGGOG00000022879	TARBP1	99	85.839	Gorilla_gorilla
ENSECAG00000023673	TARBP1	86	46.747	ENSHBUG00000008877	si:dkey-85a20.4	85	46.676	Haplochromis_burtoni
ENSECAG00000023673	TARBP1	99	78.642	ENSHGLG00000011592	TARBP1	99	78.704	Heterocephalus_glaber_female
ENSECAG00000023673	TARBP1	93	82.338	ENSHGLG00100015169	TARBP1	99	79.315	Heterocephalus_glaber_male
ENSECAG00000023673	TARBP1	98	46.282	ENSIPUG00000005249	si:dkey-85a20.4	84	43.737	Ictalurus_punctatus
ENSECAG00000023673	TARBP1	86	83.146	ENSSTOG00000032291	TARBP1	100	78.042	Ictidomys_tridecemlineatus
ENSECAG00000023673	TARBP1	95	72.832	ENSJJAG00000017840	Tarbp1	99	74.277	Jaculus_jaculus
ENSECAG00000023673	TARBP1	89	46.579	ENSKMAG00000017546	si:dkey-85a20.4	74	47.390	Kryptolebias_marmoratus
ENSECAG00000023673	TARBP1	69	50.134	ENSLBEG00000012132	si:dkey-85a20.4	74	50.134	Labrus_bergylta
ENSECAG00000023673	TARBP1	99	58.015	ENSLACG00000004337	TARBP1	94	57.906	Latimeria_chalumnae
ENSECAG00000023673	TARBP1	99	52.365	ENSLOCG00000016214	si:dkey-85a20.4	95	52.365	Lepisosteus_oculatus
ENSECAG00000023673	TARBP1	96	88.229	ENSLAFG00000011394	TARBP1	100	84.088	Loxodonta_africana
ENSECAG00000023673	TARBP1	99	88.293	ENSMFAG00000041068	TARBP1	99	84.246	Macaca_fascicularis
ENSECAG00000023673	TARBP1	99	88.074	ENSMMUG00000021703	TARBP1	99	85.065	Macaca_mulatta
ENSECAG00000023673	TARBP1	99	88.293	ENSMNEG00000045002	TARBP1	99	87.562	Macaca_nemestrina
ENSECAG00000023673	TARBP1	84	88.292	ENSMLEG00000044182	TARBP1	99	88.218	Mandrillus_leucophaeus
ENSECAG00000023673	TARBP1	96	47.085	ENSMAMG00000021760	si:dkey-85a20.4	89	45.492	Mastacembelus_armatus
ENSECAG00000023673	TARBP1	86	46.676	ENSMZEG00005005751	si:dkey-85a20.4	85	46.605	Maylandia_zebra
ENSECAG00000023673	TARBP1	99	76.018	ENSMAUG00000020968	Tarbp1	99	74.660	Mesocricetus_auratus
ENSECAG00000023673	TARBP1	99	78.838	ENSMICG00000015280	TARBP1	99	78.879	Microcebus_murinus
ENSECAG00000023673	TARBP1	99	75.771	ENSMOCG00000004128	Tarbp1	99	73.671	Microtus_ochrogaster
ENSECAG00000023673	TARBP1	98	46.025	ENSMMOG00000007795	si:dkey-85a20.4	99	41.219	Mola_mola
ENSECAG00000023673	TARBP1	99	76.948	ENSMODG00000008504	TARBP1	98	76.948	Monodelphis_domestica
ENSECAG00000023673	TARBP1	85	44.724	ENSMALG00000002916	si:dkey-85a20.4	85	45.101	Monopterus_albus
ENSECAG00000023673	TARBP1	99	75.497	MGP_CAROLIEiJ_G0031729	Tarbp1	99	73.408	Mus_caroli
ENSECAG00000023673	TARBP1	99	75.717	ENSMUSG00000090290	Tarbp1	99	73.469	Mus_musculus
ENSECAG00000023673	TARBP1	100	74.863	MGP_PahariEiJ_G0023326	Tarbp1	100	73.186	Mus_pahari
ENSECAG00000023673	TARBP1	100	75.192	MGP_SPRETEiJ_G0032846	Tarbp1	100	73.153	Mus_spretus
ENSECAG00000023673	TARBP1	75	89.960	ENSMPUG00000002802	TARBP1	100	87.712	Mustela_putorius_furo
ENSECAG00000023673	TARBP1	83	80.645	ENSMLUG00000002414	TARBP1	100	77.230	Myotis_lucifugus
ENSECAG00000023673	TARBP1	99	88.403	ENSNLEG00000002518	TARBP1	99	87.869	Nomascus_leucogenys
ENSECAG00000023673	TARBP1	69	78.390	ENSMEUG00000011370	-	67	78.390	Notamacropus_eugenii
ENSECAG00000023673	TARBP1	75	87.728	ENSOPRG00000013822	TARBP1	74	87.728	Ochotona_princeps
ENSECAG00000023673	TARBP1	99	76.295	ENSODEG00000005238	TARBP1	99	74.877	Octodon_degus
ENSECAG00000023673	TARBP1	84	47.930	ENSONIG00000009789	si:dkey-85a20.4	99	46.317	Oreochromis_niloticus
ENSECAG00000023673	TARBP1	99	86.552	ENSOCUG00000017418	TARBP1	99	86.552	Oryctolagus_cuniculus
ENSECAG00000023673	TARBP1	97	44.929	ENSORLG00000010529	si:dkey-85a20.4	85	43.997	Oryzias_latipes
ENSECAG00000023673	TARBP1	97	44.493	ENSORLG00020019264	si:dkey-85a20.4	99	40.721	Oryzias_latipes_hni
ENSECAG00000023673	TARBP1	97	44.602	ENSORLG00015003276	si:dkey-85a20.4	85	43.927	Oryzias_latipes_hsok
ENSECAG00000023673	TARBP1	99	86.080	ENSOGAG00000002379	TARBP1	99	84.412	Otolemur_garnettii
ENSECAG00000023673	TARBP1	98	87.126	ENSOARG00000003434	TARBP1	100	86.849	Ovis_aries
ENSECAG00000023673	TARBP1	84	88.507	ENSPPAG00000028097	TARBP1	99	88.507	Pan_paniscus
ENSECAG00000023673	TARBP1	95	88.272	ENSPPRG00000013561	TARBP1	100	82.438	Panthera_pardus
ENSECAG00000023673	TARBP1	83	90.632	ENSPTIG00000009281	TARBP1	100	90.558	Panthera_tigris_altaica
ENSECAG00000023673	TARBP1	99	88.184	ENSPTRG00000002124	TARBP1	99	87.761	Pan_troglodytes
ENSECAG00000023673	TARBP1	99	88.184	ENSPANG00000021933	TARBP1	99	87.562	Papio_anubis
ENSECAG00000023673	TARBP1	99	47.883	ENSPKIG00000016716	si:dkey-85a20.4	88	46.154	Paramormyrops_kingsleyae
ENSECAG00000023673	TARBP1	78	73.448	ENSPSIG00000010699	TARBP1	99	71.328	Pelodiscus_sinensis
ENSECAG00000023673	TARBP1	98	76.509	ENSPEMG00000006888	Tarbp1	100	76.955	Peromyscus_maniculatus_bairdii
ENSECAG00000023673	TARBP1	92	85.922	ENSPCIG00000029710	TARBP1	99	85.922	Phascolarctos_cinereus
ENSECAG00000023673	TARBP1	85	46.046	ENSPFOG00000013020	si:dkey-85a20.4	99	45.248	Poecilia_formosa
ENSECAG00000023673	TARBP1	85	46.681	ENSPLAG00000006044	si:dkey-85a20.4	85	45.351	Poecilia_latipinna
ENSECAG00000023673	TARBP1	99	46.464	ENSPMEG00000017857	si:dkey-85a20.4	85	45.209	Poecilia_mexicana
ENSECAG00000023673	TARBP1	99	46.797	ENSPREG00000022753	si:dkey-85a20.4	85	45.287	Poecilia_reticulata
ENSECAG00000023673	TARBP1	91	88.188	ENSPPYG00000000102	TARBP1	99	88.188	Pongo_abelii
ENSECAG00000023673	TARBP1	87	91.558	ENSPCAG00000004808	TARBP1	85	91.558	Procavia_capensis
ENSECAG00000023673	TARBP1	99	85.934	ENSPCOG00000005666	TARBP1	100	85.318	Propithecus_coquereli
ENSECAG00000023673	TARBP1	98	74.138	ENSPVAG00000014798	TARBP1	99	71.067	Pteropus_vampyrus
ENSECAG00000023673	TARBP1	86	45.455	ENSPNYG00000019135	si:dkey-85a20.4	85	45.384	Pundamilia_nyererei
ENSECAG00000023673	TARBP1	99	69.697	ENSRNOG00000053574	Tarbp1	99	69.487	Rattus_norvegicus
ENSECAG00000023673	TARBP1	98	88.558	ENSRBIG00000043362	TARBP1	93	88.444	Rhinopithecus_bieti
ENSECAG00000023673	TARBP1	99	87.965	ENSRROG00000029527	TARBP1	99	83.682	Rhinopithecus_roxellana
ENSECAG00000023673	TARBP1	89	87.527	ENSSBOG00000034503	TARBP1	99	86.000	Saimiri_boliviensis_boliviensis
ENSECAG00000023673	TARBP1	83	76.571	ENSSHAG00000000013	TARBP1	99	76.423	Sarcophilus_harrisii
ENSECAG00000023673	TARBP1	84	45.770	ENSSFOG00015002660	si:dkey-85a20.4	96	46.622	Scleropages_formosus
ENSECAG00000023673	TARBP1	90	46.774	ENSSMAG00000007081	si:dkey-85a20.4	99	42.722	Scophthalmus_maximus
ENSECAG00000023673	TARBP1	83	48.794	ENSSDUG00000023566	si:dkey-85a20.4	85	44.993	Seriola_dumerili
ENSECAG00000023673	TARBP1	85	46.605	ENSSLDG00000020200	si:dkey-85a20.4	86	46.535	Seriola_lalandi_dorsalis
ENSECAG00000023673	TARBP1	89	88.710	ENSSARG00000012207	TARBP1	89	88.710	Sorex_araneus
ENSECAG00000023673	TARBP1	99	65.678	ENSSPUG00000015364	TARBP1	99	65.489	Sphenodon_punctatus
ENSECAG00000023673	TARBP1	99	46.783	ENSSPAG00000007213	si:dkey-85a20.4	88	44.945	Stegastes_partitus
ENSECAG00000023673	TARBP1	100	90.133	ENSSSCG00000010160	TARBP1	100	89.440	Sus_scrofa
ENSECAG00000023673	TARBP1	79	73.802	ENSTGUG00000010214	TARBP1	98	73.802	Taeniopygia_guttata
ENSECAG00000023673	TARBP1	91	43.077	ENSTNIG00000016586	si:dkey-85a20.4	99	44.985	Tetraodon_nigroviridis
ENSECAG00000023673	TARBP1	90	89.290	ENSTTRG00000008707	TARBP1	95	86.291	Tursiops_truncatus
ENSECAG00000023673	TARBP1	81	90.634	ENSUMAG00000006730	TARBP1	99	88.881	Ursus_maritimus
ENSECAG00000023673	TARBP1	80	93.814	ENSVPAG00000007665	TARBP1	87	93.814	Vicugna_pacos
ENSECAG00000023673	TARBP1	85	89.660	ENSVVUG00000007460	TARBP1	98	89.458	Vulpes_vulpes
ENSECAG00000023673	TARBP1	82	58.840	ENSXETG00000016224	tarbp1	99	56.067	Xenopus_tropicalis
ENSECAG00000023673	TARBP1	78	49.250	ENSXCOG00000011779	si:dkey-85a20.4	93	49.250	Xiphophorus_couchianus
ENSECAG00000023673	TARBP1	60	51.282	ENSXMAG00000009600	si:dkey-85a20.4	100	43.715	Xiphophorus_maculatus