EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000023962 (Gene tree)
Gene ID: 100058749
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 18832 bases
Position: chr8:8834114-8852945
Accession: 22886
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000021544	PRP21_like_P	PF12230.8	1.3e-51	1	1
ENSECAP00000021544	Surp	PF01805.20	9.8e-46	1	2
ENSECAP00000021544	Surp	PF01805.20	9.8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000025874	-	2382	-	ENSECAP00000021544	793 (aa)	XP_001498274	F6Y642

Gene Model

Click here to download ENSECAG00000023962's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000023962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000023962	SF3A1	100	98.991	ENSG00000099995	SF3A1	100	98.991	Homo_sapiens
ENSECAG00000023962	SF3A1	100	83.375	ENSAPOG00000020465	sf3a1	99	85.038	Acanthochromis_polyacanthus
ENSECAG00000023962	SF3A1	100	98.868	ENSAMEG00000007737	SF3A1	100	98.868	Ailuropoda_melanoleuca
ENSECAG00000023962	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	98	85.807	Amphilophus_citrinellus
ENSECAG00000023962	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	84.910	Amphiprion_ocellaris
ENSECAG00000023962	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.038	Amphiprion_percula
ENSECAG00000023962	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	97	86.068	Anabas_testudineus
ENSECAG00000023962	SF3A1	95	94.188	ENSAPLG00000009057	SF3A1	99	93.653	Anas_platyrhynchos
ENSECAG00000023962	SF3A1	100	86.207	ENSACAG00000009415	SF3A1	100	87.562	Anolis_carolinensis
ENSECAG00000023962	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSECAG00000023962	SF3A1	100	84.383	ENSACLG00000012622	sf3a1	98	86.180	Astatotilapia_calliptera
ENSECAG00000023962	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.170	Astyanax_mexicanus
ENSECAG00000023962	SF3A1	100	99.622	ENSBTAG00000003390	SF3A1	100	99.622	Bos_taurus
ENSECAG00000023962	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSECAG00000023962	SF3A1	100	99.243	ENSCJAG00000010370	SF3A1	100	99.243	Callithrix_jacchus
ENSECAG00000023962	SF3A1	100	99.369	ENSCAFG00000012559	SF3A1	100	99.369	Canis_familiaris
ENSECAG00000023962	SF3A1	100	99.369	ENSCAFG00020000838	SF3A1	100	99.369	Canis_lupus_dingo
ENSECAG00000023962	SF3A1	100	99.496	ENSCHIG00000018642	SF3A1	100	99.496	Capra_hircus
ENSECAG00000023962	SF3A1	100	99.496	ENSTSYG00000004739	SF3A1	100	99.496	Carlito_syrichta
ENSECAG00000023962	SF3A1	94	81.575	ENSCAPG00000015414	SF3A1	98	81.575	Cavia_aperea
ENSECAG00000023962	SF3A1	100	99.369	ENSCPOG00000014589	SF3A1	100	99.369	Cavia_porcellus
ENSECAG00000023962	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSECAG00000023962	SF3A1	100	99.369	ENSCATG00000029241	SF3A1	100	99.369	Cercocebus_atys
ENSECAG00000023962	SF3A1	100	98.865	ENSCLAG00000006508	SF3A1	100	98.865	Chinchilla_lanigera
ENSECAG00000023962	SF3A1	100	99.243	ENSCSAG00000009470	SF3A1	100	99.243	Chlorocebus_sabaeus
ENSECAG00000023962	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSECAG00000023962	SF3A1	100	91.310	ENSCPBG00000007595	SF3A1	100	91.436	Chrysemys_picta_bellii
ENSECAG00000023962	SF3A1	94	52.249	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSECAG00000023962	SF3A1	96	51.613	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSECAG00000023962	SF3A1	100	99.243	ENSCANG00000033564	SF3A1	100	99.243	Colobus_angolensis_palliatus
ENSECAG00000023962	SF3A1	100	98.739	ENSCGRG00001008933	Sf3a1	100	98.739	Cricetulus_griseus_chok1gshd
ENSECAG00000023962	SF3A1	100	98.739	ENSCGRG00000006127	Sf3a1	100	98.739	Cricetulus_griseus_crigri
ENSECAG00000023962	SF3A1	100	82.035	ENSCSEG00000010792	sf3a1	99	82.398	Cynoglossus_semilaevis
ENSECAG00000023962	SF3A1	100	82.893	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSECAG00000023962	SF3A1	100	82.538	ENSDARG00000041887	sf3a1	98	84.585	Danio_rerio
ENSECAG00000023962	SF3A1	100	98.994	ENSDNOG00000010629	SF3A1	100	98.994	Dasypus_novemcinctus
ENSECAG00000023962	SF3A1	100	99.369	ENSDORG00000005613	Sf3a1	100	99.369	Dipodomys_ordii
ENSECAG00000023962	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSECAG00000023962	SF3A1	89	96.154	ENSETEG00000017194	SF3A1	100	96.154	Echinops_telfairi
ENSECAG00000023962	SF3A1	100	65.059	ENSEBUG00000001285	sf3a1	95	68.045	Eptatretus_burgeri
ENSECAG00000023962	SF3A1	100	100.000	ENSEASG00005010254	SF3A1	100	100.000	Equus_asinus_asinus
ENSECAG00000023962	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSECAG00000023962	SF3A1	100	82.581	ENSELUG00000022578	sf3a1	98	82.949	Esox_lucius
ENSECAG00000023962	SF3A1	100	99.369	ENSFCAG00000011932	SF3A1	100	99.369	Felis_catus
ENSECAG00000023962	SF3A1	95	93.254	ENSFALG00000006944	SF3A1	100	91.940	Ficedula_albicollis
ENSECAG00000023962	SF3A1	100	99.117	ENSFDAG00000009560	SF3A1	100	99.117	Fukomys_damarensis
ENSECAG00000023962	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	98	85.417	Fundulus_heteroclitus
ENSECAG00000023962	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSECAG00000023962	SF3A1	95	94.180	ENSGALG00000007937	SF3A1	100	92.443	Gallus_gallus
ENSECAG00000023962	SF3A1	100	83.709	ENSGAFG00000009111	sf3a1	97	84.367	Gambusia_affinis
ENSECAG00000023962	SF3A1	100	82.080	ENSGACG00000011893	sf3a1	97	83.508	Gasterosteus_aculeatus
ENSECAG00000023962	SF3A1	96	91.459	ENSGAGG00000000762	SF3A1	99	91.590	Gopherus_agassizii
ENSECAG00000023962	SF3A1	100	98.991	ENSGGOG00000012631	SF3A1	100	98.991	Gorilla_gorilla
ENSECAG00000023962	SF3A1	100	84.383	ENSHBUG00000015795	sf3a1	98	86.180	Haplochromis_burtoni
ENSECAG00000023962	SF3A1	100	99.369	ENSHGLG00000007907	SF3A1	100	99.369	Heterocephalus_glaber_female
ENSECAG00000023962	SF3A1	100	99.369	ENSHGLG00100013799	SF3A1	100	99.369	Heterocephalus_glaber_male
ENSECAG00000023962	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
ENSECAG00000023962	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.812	Ictalurus_punctatus
ENSECAG00000023962	SF3A1	100	99.496	ENSSTOG00000013892	SF3A1	100	99.496	Ictidomys_tridecemlineatus
ENSECAG00000023962	SF3A1	100	99.118	ENSJJAG00000022566	Sf3a1	100	99.118	Jaculus_jaculus
ENSECAG00000023962	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.766	Kryptolebias_marmoratus
ENSECAG00000023962	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	99	83.120	Labrus_bergylta
ENSECAG00000023962	SF3A1	100	87.202	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSECAG00000023962	SF3A1	100	85.213	ENSLOCG00000008251	sf3a1	97	87.013	Lepisosteus_oculatus
ENSECAG00000023962	SF3A1	98	62.038	ENSLAFG00000026032	-	98	62.038	Loxodonta_africana
ENSECAG00000023962	SF3A1	100	98.991	ENSLAFG00000000448	SF3A1	100	98.991	Loxodonta_africana
ENSECAG00000023962	SF3A1	100	99.117	ENSMFAG00000031979	SF3A1	100	99.117	Macaca_fascicularis
ENSECAG00000023962	SF3A1	100	99.117	ENSMMUG00000005547	SF3A1	100	99.117	Macaca_mulatta
ENSECAG00000023962	SF3A1	100	98.991	ENSMNEG00000037229	SF3A1	100	98.991	Macaca_nemestrina
ENSECAG00000023962	SF3A1	100	99.243	ENSMLEG00000041908	SF3A1	100	99.243	Mandrillus_leucophaeus
ENSECAG00000023962	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	96	86.458	Mastacembelus_armatus
ENSECAG00000023962	SF3A1	100	84.383	ENSMZEG00005009633	sf3a1	98	86.180	Maylandia_zebra
ENSECAG00000023962	SF3A1	95	94.180	ENSMGAG00000001330	SF3A1	99	93.645	Meleagris_gallopavo
ENSECAG00000023962	SF3A1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
ENSECAG00000023962	SF3A1	100	99.117	ENSMICG00000010038	SF3A1	100	99.117	Microcebus_murinus
ENSECAG00000023962	SF3A1	100	98.865	ENSMOCG00000008438	Sf3a1	100	98.865	Microtus_ochrogaster
ENSECAG00000023962	SF3A1	100	81.658	ENSMMOG00000015588	sf3a1	98	82.750	Mola_mola
ENSECAG00000023962	SF3A1	100	98.108	ENSMODG00000009270	SF3A1	100	98.108	Monodelphis_domestica
ENSECAG00000023962	SF3A1	100	84.383	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSECAG00000023962	SF3A1	100	98.361	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.361	Mus_caroli
ENSECAG00000023962	SF3A1	100	98.361	ENSMUSG00000002129	Sf3a1	100	98.361	Mus_musculus
ENSECAG00000023962	SF3A1	100	98.235	MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	Mus_pahari
ENSECAG00000023962	SF3A1	100	98.361	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.361	Mus_spretus
ENSECAG00000023962	SF3A1	100	99.369	ENSMPUG00000013144	SF3A1	100	99.369	Mustela_putorius_furo
ENSECAG00000023962	SF3A1	100	99.496	ENSMLUG00000002139	SF3A1	100	99.496	Myotis_lucifugus
ENSECAG00000023962	SF3A1	100	99.369	ENSNGAG00000016977	Sf3a1	100	99.369	Nannospalax_galili
ENSECAG00000023962	SF3A1	100	84.383	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSECAG00000023962	SF3A1	100	99.243	ENSNLEG00000003686	SF3A1	100	99.243	Nomascus_leucogenys
ENSECAG00000023962	SF3A1	96	88.158	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSECAG00000023962	SF3A1	100	98.487	ENSOPRG00000016636	SF3A1	100	98.487	Ochotona_princeps
ENSECAG00000023962	SF3A1	100	99.117	ENSODEG00000002571	SF3A1	100	99.117	Octodon_degus
ENSECAG00000023962	SF3A1	100	84.105	ENSONIG00000010848	sf3a1	98	85.547	Oreochromis_niloticus
ENSECAG00000023962	SF3A1	100	99.117	ENSOCUG00000007633	SF3A1	100	99.117	Oryctolagus_cuniculus
ENSECAG00000023962	SF3A1	96	81.747	ENSORLG00000013050	sf3a1	99	83.578	Oryzias_latipes
ENSECAG00000023962	SF3A1	99	80.126	ENSORLG00020003236	sf3a1	94	83.712	Oryzias_latipes_hni
ENSECAG00000023962	SF3A1	100	82.516	ENSORLG00015017411	sf3a1	99	83.504	Oryzias_latipes_hsok
ENSECAG00000023962	SF3A1	100	83.019	ENSOMEG00000013362	sf3a1	99	83.504	Oryzias_melastigma
ENSECAG00000023962	SF3A1	100	98.991	ENSOGAG00000012931	SF3A1	100	98.991	Otolemur_garnettii
ENSECAG00000023962	SF3A1	100	97.730	ENSOARG00000006849	SF3A1	100	97.730	Ovis_aries
ENSECAG00000023962	SF3A1	100	97.982	ENSPPAG00000041790	SF3A1	100	97.982	Pan_paniscus
ENSECAG00000023962	SF3A1	100	99.369	ENSPPRG00000004391	SF3A1	100	99.369	Panthera_pardus
ENSECAG00000023962	SF3A1	97	99.352	ENSPTIG00000000844	SF3A1	100	99.352	Panthera_tigris_altaica
ENSECAG00000023962	SF3A1	100	98.991	ENSPTRG00000014240	SF3A1	100	98.991	Pan_troglodytes
ENSECAG00000023962	SF3A1	100	99.243	ENSPANG00000020772	SF3A1	100	99.243	Papio_anubis
ENSECAG00000023962	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.528	Pelodiscus_sinensis
ENSECAG00000023962	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSECAG00000023962	SF3A1	100	98.991	ENSPEMG00000009494	Sf3a1	100	98.991	Peromyscus_maniculatus_bairdii
ENSECAG00000023962	SF3A1	69	77.677	ENSPMAG00000007139	-	90	77.570	Petromyzon_marinus
ENSECAG00000023962	SF3A1	100	97.982	ENSPCIG00000022692	SF3A1	100	97.982	Phascolarctos_cinereus
ENSECAG00000023962	SF3A1	100	75.126	ENSPFOG00000016768	sf3a1	93	78.912	Poecilia_formosa
ENSECAG00000023962	SF3A1	100	83.774	ENSPLAG00000017268	sf3a1	99	83.780	Poecilia_latipinna
ENSECAG00000023962	SF3A1	84	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSECAG00000023962	SF3A1	100	83.899	ENSPREG00000010347	sf3a1	99	84.163	Poecilia_reticulata
ENSECAG00000023962	SF3A1	100	99.243	ENSPPYG00000011707	SF3A1	100	99.243	Pongo_abelii
ENSECAG00000023962	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSECAG00000023962	SF3A1	100	99.369	ENSPCOG00000026630	SF3A1	100	99.369	Propithecus_coquereli
ENSECAG00000023962	SF3A1	100	95.965	ENSPVAG00000017719	SF3A1	100	95.965	Pteropus_vampyrus
ENSECAG00000023962	SF3A1	100	84.383	ENSPNYG00000018706	sf3a1	98	86.180	Pundamilia_nyererei
ENSECAG00000023962	SF3A1	98	83.206	ENSPNAG00000003721	sf3a1	98	85.306	Pygocentrus_nattereri
ENSECAG00000023962	SF3A1	100	98.361	ENSRNOG00000005218	Sf3a1	100	98.361	Rattus_norvegicus
ENSECAG00000023962	SF3A1	100	99.117	ENSRBIG00000032167	SF3A1	100	99.117	Rhinopithecus_bieti
ENSECAG00000023962	SF3A1	100	99.117	ENSRROG00000044908	SF3A1	100	99.117	Rhinopithecus_roxellana
ENSECAG00000023962	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSECAG00000023962	SF3A1	99	93.418	ENSSHAG00000003666	SF3A1	98	95.343	Sarcophilus_harrisii
ENSECAG00000023962	SF3A1	100	83.605	ENSSFOG00015004579	sf3a1	99	85.128	Scleropages_formosus
ENSECAG00000023962	SF3A1	100	81.887	ENSSMAG00000004275	sf3a1	97	82.876	Scophthalmus_maximus
ENSECAG00000023962	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	97	85.621	Seriola_dumerili
ENSECAG00000023962	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	97	85.621	Seriola_lalandi_dorsalis
ENSECAG00000023962	SF3A1	97	95.855	ENSSARG00000005960	SF3A1	100	95.855	Sorex_araneus
ENSECAG00000023962	SF3A1	96	92.098	ENSSPUG00000018863	SF3A1	100	91.667	Sphenodon_punctatus
ENSECAG00000023962	SF3A1	100	84.375	ENSSPAG00000011856	sf3a1	99	85.038	Stegastes_partitus
ENSECAG00000023962	SF3A1	100	99.496	ENSSSCG00000010002	SF3A1	100	99.496	Sus_scrofa
ENSECAG00000023962	SF3A1	95	94.195	ENSTGUG00000010547	SF3A1	99	93.661	Taeniopygia_guttata
ENSECAG00000023962	SF3A1	100	81.635	ENSTRUG00000006118	sf3a1	97	82.222	Takifugu_rubripes
ENSECAG00000023962	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSECAG00000023962	SF3A1	100	92.055	ENSTBEG00000012771	SF3A1	100	92.055	Tupaia_belangeri
ENSECAG00000023962	SF3A1	100	99.244	ENSTTRG00000001535	SF3A1	100	99.244	Tursiops_truncatus
ENSECAG00000023962	SF3A1	99	98.348	ENSUAMG00000006750	SF3A1	99	98.348	Ursus_americanus
ENSECAG00000023962	SF3A1	99	98.342	ENSUMAG00000016665	SF3A1	99	98.342	Ursus_maritimus
ENSECAG00000023962	SF3A1	100	99.369	ENSVVUG00000003075	SF3A1	100	99.369	Vulpes_vulpes
ENSECAG00000023962	SF3A1	100	86.073	ENSXETG00000016144	sf3a1	100	85.571	Xenopus_tropicalis
ENSECAG00000023962	SF3A1	100	83.333	ENSXCOG00000015653	sf3a1	97	84.575	Xiphophorus_couchianus
ENSECAG00000023962	SF3A1	100	83.459	ENSXMAG00000002753	sf3a1	97	84.706	Xiphophorus_maculatus