EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000026981 (Gene tree)
Gene ID: 100071467
Gene Symbol: SRRM1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 34446 bases
Position: chr2:30542712-30577157
Accession: 23595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000022800	PWI	PF01480.17	9.4e-30	1	1
ENSECAP00000027308	PWI	PF01480.17	9.4e-30	1	1
ENSECAP00000042414	PWI	PF01480.17	9.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000028857	-	2631	-	ENSECAP00000022800	876 (aa)	-	F6RHL6
ENSECAT00000063726	-	3652	XM_023635487	ENSECAP00000027308	901 (aa)	XP_023491255	UPI0004BDACCB
ENSECAT00000063865	-	3694	XM_023635481	ENSECAP00000042414	915 (aa)	XP_023491249	UPI0004BD51B2

Gene Model

Click here to download ENSECAG00000026981's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03013	RNA transport	KEGG
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000026981's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000026981	SRRM1	100	97.345	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSECAG00000026981	SRRM1	100	96.950	ENSAMEG00000010075	SRRM1	100	96.950	Ailuropoda_melanoleuca
ENSECAG00000026981	SRRM1	59	65.372	ENSAPLG00000002066	SRRM1	59	77.500	Anas_platyrhynchos
ENSECAG00000026981	SRRM1	100	96.903	ENSANAG00000035606	SRRM1	100	96.903	Aotus_nancymaae
ENSECAG00000026981	SRRM1	100	97.165	ENSBTAG00000013772	SRRM1	100	97.165	Bos_taurus
ENSECAG00000026981	SRRM1	100	96.187	ENSCJAG00000020822	SRRM1	100	96.346	Callithrix_jacchus
ENSECAG00000026981	SRRM1	100	97.677	ENSCAFG00020020948	SRRM1	100	97.677	Canis_lupus_dingo
ENSECAG00000026981	SRRM1	100	96.175	ENSCHIG00000014656	SRRM1	100	96.175	Capra_hircus
ENSECAG00000026981	SRRM1	100	97.566	ENSTSYG00000006782	SRRM1	100	97.566	Carlito_syrichta
ENSECAG00000026981	SRRM1	99	94.085	ENSCAPG00000011473	SRRM1	100	94.085	Cavia_aperea
ENSECAG00000026981	SRRM1	100	95.127	ENSCPOG00000015594	SRRM1	100	95.127	Cavia_porcellus
ENSECAG00000026981	SRRM1	100	96.903	ENSCCAG00000029474	SRRM1	100	96.903	Cebus_capucinus
ENSECAG00000026981	SRRM1	100	97.124	ENSCATG00000031303	SRRM1	100	97.124	Cercocebus_atys
ENSECAG00000026981	SRRM1	100	96.235	ENSCLAG00000014592	SRRM1	100	96.235	Chinchilla_lanigera
ENSECAG00000026981	SRRM1	73	97.222	ENSCHOG00000000027	SRRM1	73	97.222	Choloepus_hoffmanni
ENSECAG00000026981	SRRM1	100	97.013	ENSCANG00000028271	SRRM1	100	97.013	Colobus_angolensis_palliatus
ENSECAG00000026981	SRRM1	98	91.556	ENSDNOG00000049141	SRRM1	99	91.556	Dasypus_novemcinctus
ENSECAG00000026981	SRRM1	100	99.891	ENSEASG00005004270	SRRM1	100	99.891	Equus_asinus_asinus
ENSECAG00000026981	SRRM1	100	97.677	ENSFCAG00000000678	-	100	97.677	Felis_catus
ENSECAG00000026981	SRRM1	100	96.235	ENSFDAG00000009903	SRRM1	100	96.235	Fukomys_damarensis
ENSECAG00000026981	SRRM1	100	97.235	ENSGGOG00000005209	SRRM1	100	97.235	Gorilla_gorilla
ENSECAG00000026981	SRRM1	100	96.567	ENSHGLG00000017105	SRRM1	100	96.567	Heterocephalus_glaber_female
ENSECAG00000026981	SRRM1	99	96.107	ENSHGLG00100016772	SRRM1	99	96.107	Heterocephalus_glaber_male
ENSECAG00000026981	SRRM1	100	97.566	ENSSTOG00000014640	SRRM1	100	97.566	Ictidomys_tridecemlineatus
ENSECAG00000026981	SRRM1	100	94.380	ENSLAFG00000013830	SRRM1	100	94.380	Loxodonta_africana
ENSECAG00000026981	SRRM1	86	75.279	ENSMFAG00000038841	-	61	75.960	Macaca_fascicularis
ENSECAG00000026981	SRRM1	100	97.124	ENSMFAG00000025726	SRRM1	100	97.124	Macaca_fascicularis
ENSECAG00000026981	SRRM1	100	97.013	ENSMMUG00000006645	SRRM1	100	97.013	Macaca_mulatta
ENSECAG00000026981	SRRM1	55	76.566	ENSMMUG00000039269	-	59	75.758	Macaca_mulatta
ENSECAG00000026981	SRRM1	100	97.124	ENSMNEG00000039415	SRRM1	100	97.124	Macaca_nemestrina
ENSECAG00000026981	SRRM1	59	66.479	ENSMLEG00000032221	-	61	69.084	Mandrillus_leucophaeus
ENSECAG00000026981	SRRM1	57	97.804	ENSMLEG00000038030	-	100	90.305	Mandrillus_leucophaeus
ENSECAG00000026981	SRRM1	100	97.345	ENSMICG00000006553	SRRM1	100	97.345	Microcebus_murinus
ENSECAG00000026981	SRRM1	56	96.861	MGP_CAROLIEiJ_G0026636	Srrm1	100	85.526	Mus_caroli
ENSECAG00000026981	SRRM1	56	96.861	ENSMUSG00000028809	Srrm1	100	85.526	Mus_musculus
ENSECAG00000026981	SRRM1	56	96.861	MGP_PahariEiJ_G0028969	Srrm1	100	85.526	Mus_pahari
ENSECAG00000026981	SRRM1	56	96.861	MGP_SPRETEiJ_G0027616	Srrm1	100	85.526	Mus_spretus
ENSECAG00000026981	SRRM1	100	94.863	ENSMLUG00000006246	SRRM1	100	94.863	Myotis_lucifugus
ENSECAG00000026981	SRRM1	100	97.345	ENSNLEG00000008966	SRRM1	100	97.345	Nomascus_leucogenys
ENSECAG00000026981	SRRM1	58	89.439	ENSMEUG00000014704	SRRM1	57	85.149	Notamacropus_eugenii
ENSECAG00000026981	SRRM1	100	96.296	ENSOGAG00000010210	SRRM1	100	96.296	Otolemur_garnettii
ENSECAG00000026981	SRRM1	95	96.104	ENSOARG00000006453	SRRM1	99	97.757	Ovis_aries
ENSECAG00000026981	SRRM1	100	97.235	ENSPPAG00000043918	SRRM1	100	97.235	Pan_paniscus
ENSECAG00000026981	SRRM1	100	97.677	ENSPPRG00000002509	SRRM1	100	97.677	Panthera_pardus
ENSECAG00000026981	SRRM1	100	97.345	ENSPTRG00000000349	SRRM1	100	97.345	Pan_troglodytes
ENSECAG00000026981	SRRM1	100	96.484	ENSPANG00000010194	SRRM1	100	96.484	Papio_anubis
ENSECAG00000026981	SRRM1	55	73.939	ENSPANG00000035568	-	59	71.313	Papio_anubis
ENSECAG00000026981	SRRM1	100	96.623	ENSPPYG00000001716	SRRM1	100	96.623	Pongo_abelii
ENSECAG00000026981	SRRM1	91	80.619	ENSPCAG00000015138	SRRM1	91	80.619	Procavia_capensis
ENSECAG00000026981	SRRM1	100	96.736	ENSPCOG00000021311	SRRM1	100	96.736	Propithecus_coquereli
ENSECAG00000026981	SRRM1	100	97.168	ENSPVAG00000005836	SRRM1	100	97.168	Pteropus_vampyrus
ENSECAG00000026981	SRRM1	99	91.143	ENSRBIG00000035461	SRRM1	99	91.143	Rhinopithecus_bieti
ENSECAG00000026981	SRRM1	100	97.013	ENSRROG00000035151	SRRM1	100	97.013	Rhinopithecus_roxellana
ENSECAG00000026981	SRRM1	100	95.415	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSECAG00000026981	SRRM1	61	93.115	ENSSARG00000013718	SRRM1	60	93.443	Sorex_araneus
ENSECAG00000026981	SRRM1	99	97.585	ENSSSCG00000032947	SRRM1	100	97.497	Sus_scrofa
ENSECAG00000026981	SRRM1	100	96.623	ENSTBEG00000000100	SRRM1	100	96.623	Tupaia_belangeri
ENSECAG00000026981	SRRM1	99	96.158	ENSTTRG00000009365	SRRM1	100	96.158	Tursiops_truncatus
ENSECAG00000026981	SRRM1	96	93.311	ENSVPAG00000007698	SRRM1	100	93.311	Vicugna_pacos
ENSECAG00000026981	SRRM1	99	94.749	ENSVVUG00000026966	SRRM1	97	94.749	Vulpes_vulpes