EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000030510 (Gene tree)
Gene ID: 100067071
Gene Symbol: -
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Minus strand
Length: 74978 bases
Position: chrPJAA01003662.1:214879-289856
Accession: 100067071
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000038573	RNA_pol_Rpb1_5	PF04998.17	2.5e-103	1	1
ENSECAP00000028040	RNA_pol_Rpb1_5	PF04998.17	2.6e-103	1	1
ENSECAP00000029416	RNA_pol_Rpb1_5	PF04998.17	2.7e-103	1	1
ENSECAP00000030855	RNA_pol_Rpb1_5	PF04998.17	5.8e-93	1	1
ENSECAP00000032830	RNA_pol_Rpb1_5	PF04998.17	4.7e-67	1	1
ENSECAP00000032830	RNA_pol_Rpb1_4	PF05000.17	3.1e-25	1	1
ENSECAP00000030855	RNA_pol_Rpb1_4	PF05000.17	3.1e-25	1	1
ENSECAP00000038573	RNA_pol_Rpb1_4	PF05000.17	3.2e-25	1	1
ENSECAP00000029416	RNA_pol_Rpb1_4	PF05000.17	3.4e-25	1	1
ENSECAP00000028040	RNA_pol_Rpb1_4	PF05000.17	3.4e-25	1	1
ENSECAP00000032830	RNA_pol_Rpb1_2	PF00623.20	4.5e-70	1	1
ENSECAP00000030855	RNA_pol_Rpb1_2	PF00623.20	4.6e-70	1	1
ENSECAP00000028040	RNA_pol_Rpb1_2	PF00623.20	4.7e-70	1	1
ENSECAP00000029416	RNA_pol_Rpb1_2	PF00623.20	4.9e-70	1	1
ENSECAP00000038573	RNA_pol_Rpb1_2	PF00623.20	5e-70	1	1
ENSECAP00000038573	RNA_pol_Rpb1_3	PF04983.18	5.9e-36	1	1
ENSECAP00000028040	RNA_pol_Rpb1_3	PF04983.18	6.1e-36	1	1
ENSECAP00000032830	RNA_pol_Rpb1_3	PF04983.18	6.2e-36	1	1
ENSECAP00000029416	RNA_pol_Rpb1_3	PF04983.18	6.3e-36	1	1
ENSECAP00000030855	RNA_pol_Rpb1_3	PF04983.18	6.4e-36	1	1
ENSECAP00000032830	RNA_pol_Rpb1_1	PF04997.12	2.8e-21	1	1
ENSECAP00000030855	RNA_pol_Rpb1_1	PF04997.12	3.1e-21	1	1
ENSECAP00000029416	RNA_pol_Rpb1_1	PF04997.12	3.6e-21	1	1
ENSECAP00000038573	RNA_pol_Rpb1_1	PF04997.12	1.9e-19	1	1
ENSECAP00000028040	RNA_pol_Rpb1_1	PF04997.12	9.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000064144	-	4914	-	ENSECAP00000032830	1637 (aa)	-	-
ENSECAT00000055450	-	5065	-	ENSECAP00000028040	1670 (aa)	-	-
ENSECAT00000030668	-	5215	-	ENSECAP00000029416	1720 (aa)	XP_001916227	UPI000C9EB5BB
ENSECAT00000062522	-	4962	-	ENSECAP00000030855	1653 (aa)	-	-
ENSECAT00000060778	-	4992	-	ENSECAP00000038573	1663 (aa)	-	-

Gene Model

Click here to download ENSECAG00000030510's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000030510's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000030510	-	100	100.000	ENSECAG00000036306	-	100	100.000
ENSECAG00000030510	-	100	100.000	ENSECAG00000010092	POLR1A	100	100.000
ENSECAG00000030510	-	80	39.552	ENSECAG00000018485	POLR2A	63	39.552
ENSECAG00000030510	-	57	37.662	ENSECAG00000019416	POLR3A	77	33.898

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000030510	-	100	93.347	ENSG00000068654	POLR1A	100	92.151	Homo_sapiens
ENSECAG00000030510	-	67	75.000	ENSAPOG00000017945	polr1a	99	68.350	Acanthochromis_polyacanthus
ENSECAG00000030510	-	100	95.738	ENSAMEG00000005807	POLR1A	100	94.672	Ailuropoda_melanoleuca
ENSECAG00000030510	-	99	65.696	ENSACIG00000022147	polr1a	100	63.874	Amphilophus_citrinellus
ENSECAG00000030510	-	96	76.551	ENSAOCG00000017336	polr1a	95	77.005	Amphiprion_ocellaris
ENSECAG00000030510	-	99	70.186	ENSAPEG00000016105	polr1a	98	73.611	Amphiprion_percula
ENSECAG00000030510	-	99	70.674	ENSATEG00000016773	polr1a	100	66.205	Anabas_testudineus
ENSECAG00000030510	-	85	79.387	ENSAPLG00000013871	POLR1A	94	79.387	Anas_platyrhynchos
ENSECAG00000030510	-	99	72.211	ENSACAG00000012141	POLR1A	99	69.497	Anolis_carolinensis
ENSECAG00000030510	-	100	91.551	ENSANAG00000033927	POLR1A	100	90.698	Aotus_nancymaae
ENSECAG00000030510	-	99	65.596	ENSACLG00000020541	polr1a	100	61.982	Astatotilapia_calliptera
ENSECAG00000030510	-	100	93.971	ENSBTAG00000006481	POLR1A	100	92.209	Bos_taurus
ENSECAG00000030510	-	97	40.761	WBGene00012999	rpoa-1	98	38.146	Caenorhabditis_elegans
ENSECAG00000030510	-	100	91.935	ENSCJAG00000019547	POLR1A	100	90.872	Callithrix_jacchus
ENSECAG00000030510	-	100	95.322	ENSCAFG00000007613	POLR1A	100	93.256	Canis_familiaris
ENSECAG00000030510	-	100	94.933	ENSCAFG00020014752	POLR1A	100	93.101	Canis_lupus_dingo
ENSECAG00000030510	-	100	93.802	ENSCHIG00000018204	POLR1A	99	91.791	Capra_hircus
ENSECAG00000030510	-	100	91.060	ENSTSYG00000002761	POLR1A	100	88.669	Carlito_syrichta
ENSECAG00000030510	-	97	89.967	ENSCAPG00000010132	POLR1A	100	85.066	Cavia_aperea
ENSECAG00000030510	-	100	92.324	ENSCPOG00000012350	POLR1A	100	89.721	Cavia_porcellus
ENSECAG00000030510	-	99	92.412	ENSCCAG00000019839	POLR1A	100	91.047	Cebus_capucinus
ENSECAG00000030510	-	100	93.555	ENSCATG00000029786	POLR1A	100	92.442	Cercocebus_atys
ENSECAG00000030510	-	100	92.037	ENSCLAG00000005187	POLR1A	100	89.449	Chinchilla_lanigera
ENSECAG00000030510	-	100	93.451	ENSCSAG00000016251	POLR1A	100	92.393	Chlorocebus_sabaeus
ENSECAG00000030510	-	50	95.882	ENSCHOG00000003766	-	84	95.882	Choloepus_hoffmanni
ENSECAG00000030510	-	99	79.375	ENSCPBG00000001115	POLR1A	95	79.375	Chrysemys_picta_bellii
ENSECAG00000030510	-	99	49.926	ENSCSAVG00000007184	-	99	60.938	Ciona_savignyi
ENSECAG00000030510	-	100	89.134	ENSCANG00000031785	POLR1A	100	89.134	Colobus_angolensis_palliatus
ENSECAG00000030510	-	99	86.226	ENSCGRG00001006651	Polr1a	100	83.333	Cricetulus_griseus_chok1gshd
ENSECAG00000030510	-	58	93.116	ENSCGRG00000010834	Polr1a	100	86.957	Cricetulus_griseus_crigri
ENSECAG00000030510	-	99	66.114	ENSCSEG00000020190	polr1a	100	61.891	Cynoglossus_semilaevis
ENSECAG00000030510	-	99	70.643	ENSCVAG00000020941	polr1a	95	70.643	Cyprinodon_variegatus
ENSECAG00000030510	-	100	70.600	ENSDARG00000098375	polr1a	100	67.284	Danio_rerio
ENSECAG00000030510	-	100	88.485	ENSDNOG00000010829	POLR1A	100	83.594	Dasypus_novemcinctus
ENSECAG00000030510	-	100	89.794	ENSDORG00000008298	Polr1a	100	88.490	Dipodomys_ordii
ENSECAG00000030510	-	79	44.883	FBgn0019938	RpI1	99	43.438	Drosophila_melanogaster
ENSECAG00000030510	-	75	96.875	ENSETEG00000000412	-	72	96.875	Echinops_telfairi
ENSECAG00000030510	-	92	47.798	ENSEBUG00000005667	-	99	48.718	Eptatretus_burgeri
ENSECAG00000030510	-	100	99.709	ENSEASG00005001625	POLR1A	100	99.709	Equus_asinus_asinus
ENSECAG00000030510	-	88	96.809	ENSEEUG00000000676	POLR1A	85	96.809	Erinaceus_europaeus
ENSECAG00000030510	-	100	71.694	ENSELUG00000012769	polr1a	94	71.694	Esox_lucius
ENSECAG00000030510	-	100	96.258	ENSFCAG00000008966	POLR1A	100	94.186	Felis_catus
ENSECAG00000030510	-	99	84.496	ENSFALG00000010082	POLR1A	97	84.496	Ficedula_albicollis
ENSECAG00000030510	-	100	91.909	ENSFDAG00000013726	POLR1A	100	89.315	Fukomys_damarensis
ENSECAG00000030510	-	99	66.494	ENSFHEG00000005996	polr1a	100	62.254	Fundulus_heteroclitus
ENSECAG00000030510	-	99	61.915	ENSGMOG00000002230	polr1a	100	59.815	Gadus_morhua
ENSECAG00000030510	-	90	75.312	ENSGALG00000038160	-	94	75.312	Gallus_gallus
ENSECAG00000030510	-	99	68.776	ENSGAFG00000015266	polr1a	100	64.310	Gambusia_affinis
ENSECAG00000030510	-	99	69.772	ENSGACG00000018791	polr1a	100	64.928	Gasterosteus_aculeatus
ENSECAG00000030510	-	89	81.969	ENSGAGG00000004984	-	96	81.542	Gopherus_agassizii
ENSECAG00000030510	-	100	93.243	ENSGGOG00000001788	POLR1A	100	92.035	Gorilla_gorilla
ENSECAG00000030510	-	84	83.077	ENSHBUG00000020021	polr1a	89	83.077	Haplochromis_burtoni
ENSECAG00000030510	-	100	92.531	ENSHGLG00000006334	POLR1A	100	90.192	Heterocephalus_glaber_female
ENSECAG00000030510	-	100	92.054	ENSHGLG00100006614	POLR1A	100	89.931	Heterocephalus_glaber_male
ENSECAG00000030510	-	100	64.901	ENSHCOG00000003345	polr1a	100	62.840	Hippocampus_comes
ENSECAG00000030510	-	100	70.393	ENSIPUG00000013174	polr1a	96	70.393	Ictalurus_punctatus
ENSECAG00000030510	-	99	92.004	ENSSTOG00000012580	POLR1A	100	87.573	Ictidomys_tridecemlineatus
ENSECAG00000030510	-	100	91.097	ENSJJAG00000013113	Polr1a	100	88.167	Jaculus_jaculus
ENSECAG00000030510	-	99	69.854	ENSKMAG00000007399	polr1a	100	65.739	Kryptolebias_marmoratus
ENSECAG00000030510	-	94	76.541	ENSLBEG00000015401	polr1a	94	76.541	Labrus_bergylta
ENSECAG00000030510	-	51	84.413	ENSLACG00000003218	polr1a	93	84.413	Latimeria_chalumnae
ENSECAG00000030510	-	100	75.000	ENSLOCG00000010881	polr1a	100	70.711	Lepisosteus_oculatus
ENSECAG00000030510	-	100	92.982	ENSLAFG00000014948	POLR1A	100	91.262	Loxodonta_africana
ENSECAG00000030510	-	100	93.451	ENSMFAG00000046097	POLR1A	100	92.384	Macaca_fascicularis
ENSECAG00000030510	-	100	93.347	ENSMMUG00000015815	POLR1A	100	92.267	Macaca_mulatta
ENSECAG00000030510	-	100	93.451	ENSMNEG00000043313	POLR1A	100	92.384	Macaca_nemestrina
ENSECAG00000030510	-	100	93.347	ENSMLEG00000042428	POLR1A	100	91.802	Mandrillus_leucophaeus
ENSECAG00000030510	-	99	71.102	ENSMAMG00000016565	polr1a	100	65.972	Mastacembelus_armatus
ENSECAG00000030510	-	99	69.979	ENSMZEG00005004915	polr1a	100	65.569	Maylandia_zebra
ENSECAG00000030510	-	99	74.922	ENSMGAG00000013111	POLR1A	96	84.252	Meleagris_gallopavo
ENSECAG00000030510	-	94	88.005	ENSMAUG00000008497	Polr1a	100	88.061	Mesocricetus_auratus
ENSECAG00000030510	-	100	94.075	ENSMICG00000000757	POLR1A	100	92.272	Microcebus_murinus
ENSECAG00000030510	-	100	90.506	ENSMOCG00000000122	Polr1a	100	87.782	Microtus_ochrogaster
ENSECAG00000030510	-	99	70.239	ENSMMOG00000010216	polr1a	100	65.449	Mola_mola
ENSECAG00000030510	-	100	82.420	ENSMODG00000009335	POLR1A	95	82.523	Monodelphis_domestica
ENSECAG00000030510	-	99	70.656	ENSMALG00000013363	polr1a	100	65.703	Monopterus_albus
ENSECAG00000030510	-	100	88.545	MGP_CAROLIEiJ_G0028494	Polr1a	100	86.508	Mus_caroli
ENSECAG00000030510	-	100	88.751	ENSMUSG00000049553	Polr1a	100	86.508	Mus_musculus
ENSECAG00000030510	-	100	89.370	MGP_PahariEiJ_G0022230	Polr1a	100	87.145	Mus_pahari
ENSECAG00000030510	-	100	88.648	MGP_SPRETEiJ_G0029499	Polr1a	100	85.845	Mus_spretus
ENSECAG00000030510	-	100	96.050	ENSMPUG00000009135	POLR1A	100	93.314	Mustela_putorius_furo
ENSECAG00000030510	-	100	92.688	ENSMLUG00000015723	POLR1A	100	90.804	Myotis_lucifugus
ENSECAG00000030510	-	100	91.331	ENSNGAG00000017907	Polr1a	100	88.484	Nannospalax_galili
ENSECAG00000030510	-	99	69.876	ENSNBRG00000000519	polr1a	100	65.627	Neolamprologus_brichardi
ENSECAG00000030510	-	100	90.153	ENSNLEG00000002264	POLR1A	100	90.104	Nomascus_leucogenys
ENSECAG00000030510	-	78	92.913	ENSMEUG00000011665	-	75	92.913	Notamacropus_eugenii
ENSECAG00000030510	-	99	85.447	ENSOPRG00000008269	POLR1A	100	83.225	Ochotona_princeps
ENSECAG00000030510	-	100	92.739	ENSODEG00000003542	POLR1A	100	89.895	Octodon_degus
ENSECAG00000030510	-	99	69.804	ENSONIG00000015895	polr1a	100	66.147	Oreochromis_niloticus
ENSECAG00000030510	-	100	93.035	ENSOCUG00000010138	POLR1A	100	91.284	Oryctolagus_cuniculus
ENSECAG00000030510	-	99	69.565	ENSORLG00000008753	polr1a	95	69.565	Oryzias_latipes
ENSECAG00000030510	-	99	68.530	ENSORLG00020020726	polr1a	99	64.137	Oryzias_latipes_hni
ENSECAG00000030510	-	96	75.532	ENSORLG00015016071	polr1a	99	75.556	Oryzias_latipes_hsok
ENSECAG00000030510	-	100	92.412	ENSOGAG00000004031	POLR1A	100	91.047	Otolemur_garnettii
ENSECAG00000030510	-	100	93.983	ENSOARG00000020601	POLR1A	100	92.058	Ovis_aries
ENSECAG00000030510	-	100	93.243	ENSPPAG00000042450	POLR1A	100	91.860	Pan_paniscus
ENSECAG00000030510	-	100	96.154	ENSPPRG00000006702	POLR1A	100	94.477	Panthera_pardus
ENSECAG00000030510	-	100	95.351	ENSPTIG00000018783	POLR1A	100	94.032	Panthera_tigris_altaica
ENSECAG00000030510	-	100	93.035	ENSPTRG00000012147	POLR1A	100	91.802	Pan_troglodytes
ENSECAG00000030510	-	100	93.347	ENSPANG00000025908	POLR1A	100	92.326	Papio_anubis
ENSECAG00000030510	-	100	71.813	ENSPKIG00000005468	polr1a	99	75.694	Paramormyrops_kingsleyae
ENSECAG00000030510	-	62	89.147	ENSPSIG00000009321	-	94	89.147	Pelodiscus_sinensis
ENSECAG00000030510	-	58	67.932	ENSPMGG00000009718	polr1a	96	67.932	Periophthalmus_magnuspinnatus
ENSECAG00000030510	-	100	91.228	ENSPEMG00000022224	Polr1a	100	88.709	Peromyscus_maniculatus_bairdii
ENSECAG00000030510	-	95	88.372	ENSPCIG00000004222	POLR1A	95	88.372	Phascolarctos_cinereus
ENSECAG00000030510	-	99	69.326	ENSPFOG00000005025	polr1a	95	69.326	Poecilia_formosa
ENSECAG00000030510	-	99	69.534	ENSPLAG00000021389	polr1a	100	64.570	Poecilia_latipinna
ENSECAG00000030510	-	99	66.840	ENSPMEG00000006463	polr1a	100	62.701	Poecilia_mexicana
ENSECAG00000030510	-	99	69.430	ENSPREG00000002389	polr1a	100	64.520	Poecilia_reticulata
ENSECAG00000030510	-	100	92.857	ENSPPYG00000012217	POLR1A	100	91.453	Pongo_abelii
ENSECAG00000030510	-	92	100.000	ENSPCAG00000011582	POLR1A	92	100.000	Procavia_capensis
ENSECAG00000030510	-	100	93.971	ENSPCOG00000026987	POLR1A	100	92.446	Propithecus_coquereli
ENSECAG00000030510	-	95	94.118	ENSPVAG00000012674	POLR1A	95	93.286	Pteropus_vampyrus
ENSECAG00000030510	-	99	69.979	ENSPNYG00000000026	polr1a	100	65.569	Pundamilia_nyererei
ENSECAG00000030510	-	96	75.250	ENSPNAG00000019223	polr1a	94	75.250	Pygocentrus_nattereri
ENSECAG00000030510	-	100	90.093	ENSRNOG00000009545	Polr1a	100	88.130	Rattus_norvegicus
ENSECAG00000030510	-	100	92.620	ENSRBIG00000028335	POLR1A	100	91.580	Rhinopithecus_bieti
ENSECAG00000030510	-	100	92.516	ENSRROG00000031473	POLR1A	100	91.521	Rhinopithecus_roxellana
ENSECAG00000030510	-	98	52.941	YOR341W	RPA190	93	52.941	Saccharomyces_cerevisiae
ENSECAG00000030510	-	100	91.398	ENSSBOG00000030262	POLR1A	100	90.640	Saimiri_boliviensis_boliviensis
ENSECAG00000030510	-	100	74.717	ENSSHAG00000014739	POLR1A	100	73.760	Sarcophilus_harrisii
ENSECAG00000030510	-	100	72.774	ENSSFOG00015019716	polr1a	100	68.000	Scleropages_formosus
ENSECAG00000030510	-	99	70.228	ENSSMAG00000014342	polr1a	100	65.992	Scophthalmus_maximus
ENSECAG00000030510	-	99	70.600	ENSSDUG00000014631	polr1a	100	66.821	Seriola_dumerili
ENSECAG00000030510	-	99	67.461	ENSSLDG00000024095	polr1a	100	64.544	Seriola_lalandi_dorsalis
ENSECAG00000030510	-	78	97.872	ENSSARG00000003136	-	76	97.872	Sorex_araneus
ENSECAG00000030510	-	99	77.122	ENSSPUG00000004215	POLR1A	98	77.949	Sphenodon_punctatus
ENSECAG00000030510	-	68	72.235	ENSSPAG00000016341	polr1a	96	72.235	Stegastes_partitus
ENSECAG00000030510	-	86	93.203	ENSSSCG00000008226	POLR1A	99	93.183	Sus_scrofa
ENSECAG00000030510	-	98	74.601	ENSTGUG00000010704	POLR1A	100	70.471	Taeniopygia_guttata
ENSECAG00000030510	-	99	68.536	ENSTRUG00000002210	polr1a	95	68.536	Takifugu_rubripes
ENSECAG00000030510	-	99	64.337	ENSTNIG00000010116	polr1a	100	60.161	Tetraodon_nigroviridis
ENSECAG00000030510	-	76	96.903	ENSTBEG00000008646	POLR1A	74	96.903	Tupaia_belangeri
ENSECAG00000030510	-	100	91.788	ENSTTRG00000008597	POLR1A	100	88.837	Tursiops_truncatus
ENSECAG00000030510	-	71	94.421	ENSUAMG00000012158	-	94	93.829	Ursus_americanus
ENSECAG00000030510	-	100	94.802	ENSUMAG00000006700	POLR1A	100	93.256	Ursus_maritimus
ENSECAG00000030510	-	100	95.218	ENSVVUG00000001245	POLR1A	100	93.140	Vulpes_vulpes
ENSECAG00000030510	-	99	72.718	ENSXETG00000001952	polr1a	100	69.790	Xenopus_tropicalis
ENSECAG00000030510	-	99	69.430	ENSXMAG00000004032	polr1a	100	64.726	Xiphophorus_maculatus