EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSECAG00000031416 (Gene tree)
Gene ID: 100071641
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chr2:96577815-96578927
Accession: 100071641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000025263	RRM_5	PF13893.6	4.8e-16	1	3
ENSECAP00000025263	RRM_5	PF13893.6	4.8e-16	2	3
ENSECAP00000025263	RRM_5	PF13893.6	4.8e-16	3	3
ENSECAP00000025263	RRM_1	PF00076.22	3.4e-84	1	4
ENSECAP00000025263	RRM_1	PF00076.22	3.4e-84	2	4
ENSECAP00000025263	RRM_1	PF00076.22	3.4e-84	3	4
ENSECAP00000025263	RRM_1	PF00076.22	3.4e-84	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000031962	PABPC4L-201	1113	-	ENSECAP00000025263	370 (aa)	XP_014593480	UPI0001795DD3

Gene Model

Click here to download ENSECAG00000031416's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03013	RNA transport	KEGG
ecb03015	mRNA surveillance pathway	KEGG
ecb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000031416's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSECAG00000031416	PABPC4L	95	60.606	ENSECAG00000002620	-	96	60.606
ENSECAG00000031416	PABPC4L	98	33.333	ENSECAG00000022284	ELAVL4	94	33.333
ENSECAG00000031416	PABPC4L	97	51.268	ENSECAG00000038200	-	58	51.268
ENSECAG00000031416	PABPC4L	98	62.640	ENSECAG00000003452	PABPC5	96	62.637
ENSECAG00000031416	PABPC4L	86	30.216	ENSECAG00000009970	TIAL1	93	33.071
ENSECAG00000031416	PABPC4L	98	32.099	ENSECAG00000020142	ELAVL2	96	32.099
ENSECAG00000031416	PABPC4L	71	31.217	ENSECAG00000023237	HNRNPA3	52	30.270
ENSECAG00000031416	PABPC4L	99	30.435	ENSECAG00000020594	ELAVL3	89	30.435
ENSECAG00000031416	PABPC4L	82	34.146	ENSECAG00000006649	CELF2	54	34.146
ENSECAG00000031416	PABPC4L	97	31.319	ENSECAG00000012980	TRNAU1AP	89	36.111
ENSECAG00000031416	PABPC4L	82	37.838	ENSECAG00000007741	CELF1	54	37.838
ENSECAG00000031416	PABPC4L	99	73.784	ENSECAG00000009396	PABPC4	58	73.784
ENSECAG00000031416	PABPC4L	91	63.429	ENSECAG00000040139	-	69	63.429
ENSECAG00000031416	PABPC4L	84	43.421	ENSECAG00000024257	RBM3	91	49.206
ENSECAG00000031416	PABPC4L	99	70.270	ENSECAG00000020699	PABPC1	61	70.270

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000031416	PABPC4L	99	89.973	ENSG00000254535	PABPC4L	99	89.973	Homo_sapiens
ENSECAG00000031416	PABPC4L	99	87.263	ENSANAG00000017199	PABPC4L	86	87.263	Aotus_nancymaae
ENSECAG00000031416	PABPC4L	100	92.703	ENSBTAG00000046902	PABPC4L	100	92.703	Bos_taurus
ENSECAG00000031416	PABPC4L	99	87.534	ENSCJAG00000045332	PABPC4L	86	87.534	Callithrix_jacchus
ENSECAG00000031416	PABPC4L	99	75.543	ENSCAFG00020019182	-	55	75.543	Canis_lupus_dingo
ENSECAG00000031416	PABPC4L	100	92.432	ENSCHIG00000007231	PABPC4L	100	92.432	Capra_hircus
ENSECAG00000031416	PABPC4L	97	78.743	ENSCAPG00000000555	PABPC4L	100	78.743	Cavia_aperea
ENSECAG00000031416	PABPC4L	99	75.881	ENSCPOG00000033167	PABPC4L	100	75.881	Cavia_porcellus
ENSECAG00000031416	PABPC4L	99	87.534	ENSCCAG00000031681	PABPC4L	86	87.534	Cebus_capucinus
ENSECAG00000031416	PABPC4L	99	81.572	ENSCLAG00000017628	PABPC4L	99	81.572	Chinchilla_lanigera
ENSECAG00000031416	PABPC4L	99	87.805	ENSCANG00000037677	PABPC4L	99	87.805	Colobus_angolensis_palliatus
ENSECAG00000031416	PABPC4L	99	80.217	ENSCGRG00001002070	Pabpc4l	99	80.217	Cricetulus_griseus_chok1gshd
ENSECAG00000031416	PABPC4L	99	80.217	ENSCGRG00000020086	Pabpc4l	99	80.217	Cricetulus_griseus_crigri
ENSECAG00000031416	PABPC4L	99	89.973	ENSDNOG00000031077	PABPC4L	95	89.973	Dasypus_novemcinctus
ENSECAG00000031416	PABPC4L	100	99.459	ENSEASG00005007883	PABPC4L	100	99.459	Equus_asinus_asinus
ENSECAG00000031416	PABPC4L	100	93.243	ENSFCAG00000028270	PABPC4L	100	93.243	Felis_catus
ENSECAG00000031416	PABPC4L	100	79.730	ENSFDAG00000019606	PABPC4L	100	79.730	Fukomys_damarensis
ENSECAG00000031416	PABPC4L	99	89.973	ENSGGOG00000024991	PABPC4L	99	89.973	Gorilla_gorilla
ENSECAG00000031416	PABPC4L	100	80.811	ENSHGLG00000020104	PABPC4L	100	80.811	Heterocephalus_glaber_female
ENSECAG00000031416	PABPC4L	100	80.811	ENSHGLG00100020648	PABPC4L	100	80.811	Heterocephalus_glaber_male
ENSECAG00000031416	PABPC4L	99	85.135	ENSSTOG00000019472	PABPC4L	99	85.135	Ictidomys_tridecemlineatus
ENSECAG00000031416	PABPC4L	100	80.541	ENSJJAG00000004090	Pabpc4l	100	80.541	Jaculus_jaculus
ENSECAG00000031416	PABPC4L	99	79.675	ENSMAUG00000016313	Pabpc4l	99	79.675	Mesocricetus_auratus
ENSECAG00000031416	PABPC4L	99	89.702	ENSMICG00000029683	PABPC4L	99	89.702	Microcebus_murinus
ENSECAG00000031416	PABPC4L	99	81.301	ENSMOCG00000007551	Pabpc4l	99	81.301	Microtus_ochrogaster
ENSECAG00000031416	PABPC4L	99	79.070	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	Mus_caroli
ENSECAG00000031416	PABPC4L	99	79.651	ENSMUSG00000090919	Pabpc4l	100	80.000	Mus_musculus
ENSECAG00000031416	PABPC4L	99	80.233	MGP_PahariEiJ_G0026409	Pabpc4l	100	80.233	Mus_pahari
ENSECAG00000031416	PABPC4L	99	79.070	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	Mus_spretus
ENSECAG00000031416	PABPC4L	99	82.385	ENSMLUG00000008254	PABPC4L	99	82.385	Myotis_lucifugus
ENSECAG00000031416	PABPC4L	99	84.553	ENSNGAG00000001502	Pabpc4l	99	84.553	Nannospalax_galili
ENSECAG00000031416	PABPC4L	99	90.244	ENSNLEG00000019300	PABPC4L	99	90.244	Nomascus_leucogenys
ENSECAG00000031416	PABPC4L	99	82.927	ENSOGAG00000026166	PABPC4L	99	82.927	Otolemur_garnettii
ENSECAG00000031416	PABPC4L	99	90.402	ENSPPAG00000043745	PABPC4L	93	90.402	Pan_paniscus
ENSECAG00000031416	PABPC4L	100	92.703	ENSPPRG00000018628	PABPC4L	100	92.703	Panthera_pardus
ENSECAG00000031416	PABPC4L	100	93.243	ENSPTIG00000010106	PABPC4L	100	93.243	Panthera_tigris_altaica
ENSECAG00000031416	PABPC4L	99	90.402	ENSPTRG00000045513	-	79	90.402	Pan_troglodytes
ENSECAG00000031416	PABPC4L	99	80.488	ENSPEMG00000012565	Pabpc4l	99	80.488	Peromyscus_maniculatus_bairdii
ENSECAG00000031416	PABPC4L	99	89.702	ENSPCOG00000025578	PABPC4L	99	89.702	Propithecus_coquereli
ENSECAG00000031416	PABPC4L	99	78.591	ENSRNOG00000029749	Pabpc4l	99	78.591	Rattus_norvegicus
ENSECAG00000031416	PABPC4L	99	87.263	ENSRBIG00000030229	PABPC4L	99	87.263	Rhinopithecus_bieti
ENSECAG00000031416	PABPC4L	99	86.992	ENSRROG00000020367	PABPC4L	99	86.992	Rhinopithecus_roxellana
ENSECAG00000031416	PABPC4L	99	86.450	ENSSBOG00000016382	PABPC4L	99	86.450	Saimiri_boliviensis_boliviensis
ENSECAG00000031416	PABPC4L	100	87.297	ENSSSCG00000009067	PABPC4L	100	87.297	Sus_scrofa
ENSECAG00000031416	PABPC4L	100	92.703	ENSUAMG00000001289	PABPC4L	100	92.703	Ursus_americanus
ENSECAG00000031416	PABPC4L	100	92.703	ENSUMAG00000014887	PABPC4L	100	92.703	Ursus_maritimus
ENSECAG00000031416	PABPC4L	93	76.829	ENSVVUG00000011060	-	75	76.829	Vulpes_vulpes