EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000000154 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Plus strand
Length: 16759 bases
Position: chrGeneScaffold_6455:5215-21973
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000000129	HVSL	PF09749.9	9e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000000153	USB1-201	798	-	ENSEEUP00000000129	265 (aa)	-	UPI0000F61DBB

Gene Model

Click here to download ENSEEUG00000000154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000000154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000000154	USB1	100	59.245	ENSG00000103005	USB1	82	76.705	Homo_sapiens
ENSEEUG00000000154	USB1	58	47.059	ENSAPOG00000011942	usb1	61	46.821	Acanthochromis_polyacanthus
ENSEEUG00000000154	USB1	100	60.223	ENSAMEG00000017205	USB1	65	78.409	Ailuropoda_melanoleuca
ENSEEUG00000000154	USB1	65	52.023	ENSACIG00000012234	usb1	63	52.023	Amphilophus_citrinellus
ENSEEUG00000000154	USB1	58	50.327	ENSAOCG00000014831	usb1	61	49.711	Amphiprion_ocellaris
ENSEEUG00000000154	USB1	58	50.980	ENSAPEG00000000296	usb1	61	50.289	Amphiprion_percula
ENSEEUG00000000154	USB1	58	50.980	ENSATEG00000009348	usb1	61	50.289	Anabas_testudineus
ENSEEUG00000000154	USB1	62	63.190	ENSAPLG00000002756	USB1	78	63.636	Anas_platyrhynchos
ENSEEUG00000000154	USB1	66	55.429	ENSACAG00000015481	USB1	76	55.429	Anolis_carolinensis
ENSEEUG00000000154	USB1	66	78.409	ENSANAG00000035640	USB1	66	78.409	Aotus_nancymaae
ENSEEUG00000000154	USB1	65	49.711	ENSACLG00000020586	usb1	61	49.711	Astatotilapia_calliptera
ENSEEUG00000000154	USB1	66	44.000	ENSAMXG00000040146	usb1	58	44.000	Astyanax_mexicanus
ENSEEUG00000000154	USB1	100	61.509	ENSBTAG00000015758	USB1	100	61.509	Bos_taurus
ENSEEUG00000000154	USB1	66	78.409	ENSCJAG00000011733	USB1	66	78.409	Callithrix_jacchus
ENSEEUG00000000154	USB1	66	78.286	ENSCAFG00020009263	USB1	66	78.286	Canis_lupus_dingo
ENSEEUG00000000154	USB1	100	60.755	ENSCHIG00000024290	USB1	100	60.755	Capra_hircus
ENSEEUG00000000154	USB1	100	62.642	ENSTSYG00000006997	USB1	100	62.642	Carlito_syrichta
ENSEEUG00000000154	USB1	66	61.932	ENSCAPG00000009057	USB1	72	61.932	Cavia_aperea
ENSEEUG00000000154	USB1	100	60.526	ENSCPOG00000014325	USB1	66	80.114	Cavia_porcellus
ENSEEUG00000000154	USB1	66	78.409	ENSCCAG00000022132	USB1	66	78.409	Cebus_capucinus
ENSEEUG00000000154	USB1	66	79.545	ENSCATG00000032174	USB1	66	79.545	Cercocebus_atys
ENSEEUG00000000154	USB1	66	79.545	ENSCLAG00000007363	USB1	100	79.545	Chinchilla_lanigera
ENSEEUG00000000154	USB1	66	79.545	ENSCSAG00000004783	USB1	66	79.545	Chlorocebus_sabaeus
ENSEEUG00000000154	USB1	62	61.350	ENSCPBG00000026943	USB1	63	60.227	Chrysemys_picta_bellii
ENSEEUG00000000154	USB1	66	78.977	ENSCANG00000037135	USB1	67	78.977	Colobus_angolensis_palliatus
ENSEEUG00000000154	USB1	100	60.448	ENSCGRG00001011243	USB1	66	78.409	Cricetulus_griseus_chok1gshd
ENSEEUG00000000154	USB1	100	60.448	ENSCGRG00000013252	USB1	66	78.409	Cricetulus_griseus_crigri
ENSEEUG00000000154	USB1	65	43.353	ENSCSEG00000013881	usb1	62	43.353	Cynoglossus_semilaevis
ENSEEUG00000000154	USB1	58	48.366	ENSCVAG00000009252	usb1	74	46.821	Cyprinodon_variegatus
ENSEEUG00000000154	USB1	65	45.665	ENSDARG00000003841	usb1	64	44.886	Danio_rerio
ENSEEUG00000000154	USB1	100	60.377	ENSDORG00000001888	Usb1	66	78.977	Dipodomys_ordii
ENSEEUG00000000154	USB1	65	33.143	FBgn0037713	CG16790	64	33.143	Drosophila_melanogaster
ENSEEUG00000000154	USB1	65	58.960	ENSETEG00000019682	USB1	65	58.960	Echinops_telfairi
ENSEEUG00000000154	USB1	65	40.116	ENSEBUG00000005889	usb1	60	40.116	Eptatretus_burgeri
ENSEEUG00000000154	USB1	100	62.264	ENSEASG00005005484	USB1	66	80.114	Equus_asinus_asinus
ENSEEUG00000000154	USB1	100	62.264	ENSECAG00000019493	USB1	61	80.114	Equus_caballus
ENSEEUG00000000154	USB1	65	45.087	ENSELUG00000010974	usb1	63	45.087	Esox_lucius
ENSEEUG00000000154	USB1	66	80.682	ENSFCAG00000002693	USB1	66	80.682	Felis_catus
ENSEEUG00000000154	USB1	60	58.750	ENSFALG00000006876	USB1	66	58.857	Ficedula_albicollis
ENSEEUG00000000154	USB1	100	62.172	ENSFDAG00000010052	USB1	66	80.682	Fukomys_damarensis
ENSEEUG00000000154	USB1	58	47.712	ENSGMOG00000004228	usb1	77	46.821	Gadus_morhua
ENSEEUG00000000154	USB1	61	62.112	ENSGALG00000035604	USB1	69	61.932	Gallus_gallus
ENSEEUG00000000154	USB1	58	49.673	ENSGAFG00000021890	usb1	62	48.555	Gambusia_affinis
ENSEEUG00000000154	USB1	56	47.651	ENSGACG00000003257	usb1	62	46.243	Gasterosteus_aculeatus
ENSEEUG00000000154	USB1	61	61.491	ENSGAGG00000022572	USB1	64	60.345	Gopherus_agassizii
ENSEEUG00000000154	USB1	100	60.000	ENSGGOG00000017147	USB1	66	77.841	Gorilla_gorilla
ENSEEUG00000000154	USB1	65	50.289	ENSHBUG00000009823	usb1	61	50.289	Haplochromis_burtoni
ENSEEUG00000000154	USB1	100	61.798	ENSHGLG00000016078	USB1	64	80.114	Heterocephalus_glaber_female
ENSEEUG00000000154	USB1	100	61.798	ENSHGLG00100005562	USB1	64	80.114	Heterocephalus_glaber_male
ENSEEUG00000000154	USB1	65	48.837	ENSHCOG00000015633	usb1	66	48.837	Hippocampus_comes
ENSEEUG00000000154	USB1	65	48.538	ENSIPUG00000008601	usb1	59	48.538	Ictalurus_punctatus
ENSEEUG00000000154	USB1	100	60.440	ENSSTOG00000007548	USB1	64	81.818	Ictidomys_tridecemlineatus
ENSEEUG00000000154	USB1	100	62.030	ENSJJAG00000021859	Usb1	66	80.682	Jaculus_jaculus
ENSEEUG00000000154	USB1	58	48.366	ENSKMAG00000007200	usb1	61	48.555	Kryptolebias_marmoratus
ENSEEUG00000000154	USB1	58	52.564	ENSLACG00000000105	USB1	54	52.564	Latimeria_chalumnae
ENSEEUG00000000154	USB1	65	48.555	ENSLOCG00000000465	usb1	61	48.555	Lepisosteus_oculatus
ENSEEUG00000000154	USB1	66	79.545	ENSMFAG00000003926	USB1	66	79.545	Macaca_fascicularis
ENSEEUG00000000154	USB1	66	79.545	ENSMMUG00000022669	USB1	66	79.545	Macaca_mulatta
ENSEEUG00000000154	USB1	66	78.977	ENSMNEG00000042487	USB1	66	78.977	Macaca_nemestrina
ENSEEUG00000000154	USB1	66	79.545	ENSMLEG00000028756	USB1	66	79.545	Mandrillus_leucophaeus
ENSEEUG00000000154	USB1	58	50.980	ENSMAMG00000015092	usb1	62	50.289	Mastacembelus_armatus
ENSEEUG00000000154	USB1	65	49.711	ENSMZEG00005010008	usb1	61	49.711	Maylandia_zebra
ENSEEUG00000000154	USB1	100	61.049	ENSMAUG00000007832	Usb1	66	79.545	Mesocricetus_auratus
ENSEEUG00000000154	USB1	66	76.705	ENSMICG00000004900	USB1	100	60.000	Microcebus_murinus
ENSEEUG00000000154	USB1	66	78.409	ENSMOCG00000022647	Usb1	66	78.409	Microtus_ochrogaster
ENSEEUG00000000154	USB1	65	47.977	ENSMMOG00000000490	usb1	67	47.977	Mola_mola
ENSEEUG00000000154	USB1	66	65.341	ENSMODG00000014067	USB1	66	65.341	Monodelphis_domestica
ENSEEUG00000000154	USB1	66	50.000	ENSMALG00000005930	usb1	61	50.000	Monopterus_albus
ENSEEUG00000000154	USB1	66	76.136	MGP_CAROLIEiJ_G0031421	Usb1	66	76.136	Mus_caroli
ENSEEUG00000000154	USB1	66	76.136	ENSMUSG00000031792	Usb1	66	76.136	Mus_musculus
ENSEEUG00000000154	USB1	66	76.136	MGP_PahariEiJ_G0023019	Usb1	66	76.136	Mus_pahari
ENSEEUG00000000154	USB1	66	75.568	MGP_SPRETEiJ_G0032540	Usb1	66	75.568	Mus_spretus
ENSEEUG00000000154	USB1	100	58.364	ENSMPUG00000004684	USB1	63	75.568	Mustela_putorius_furo
ENSEEUG00000000154	USB1	66	80.114	ENSMLUG00000007400	USB1	76	80.114	Myotis_lucifugus
ENSEEUG00000000154	USB1	100	60.967	ENSNGAG00000009703	Usb1	65	80.682	Nannospalax_galili
ENSEEUG00000000154	USB1	65	50.289	ENSNBRG00000008747	usb1	79	50.289	Neolamprologus_brichardi
ENSEEUG00000000154	USB1	94	58.800	ENSNLEG00000003340	USB1	64	77.640	Nomascus_leucogenys
ENSEEUG00000000154	USB1	100	58.491	ENSODEG00000016214	USB1	66	78.409	Octodon_degus
ENSEEUG00000000154	USB1	65	50.289	ENSONIG00000011063	usb1	62	50.289	Oreochromis_niloticus
ENSEEUG00000000154	USB1	66	63.068	ENSOANG00000012118	USB1	74	63.068	Ornithorhynchus_anatinus
ENSEEUG00000000154	USB1	58	47.712	ENSORLG00000012479	usb1	63	46.821	Oryzias_latipes
ENSEEUG00000000154	USB1	58	47.059	ENSORLG00020018671	usb1	63	46.243	Oryzias_latipes_hni
ENSEEUG00000000154	USB1	58	47.712	ENSORLG00015009679	usb1	64	46.821	Oryzias_latipes_hsok
ENSEEUG00000000154	USB1	58	45.752	ENSOMEG00000012930	usb1	62	45.665	Oryzias_melastigma
ENSEEUG00000000154	USB1	100	59.623	ENSOGAG00000003273	USB1	100	59.623	Otolemur_garnettii
ENSEEUG00000000154	USB1	66	78.409	ENSOARG00000001107	USB1	67	78.409	Ovis_aries
ENSEEUG00000000154	USB1	100	60.000	ENSPPAG00000042137	USB1	66	77.841	Pan_paniscus
ENSEEUG00000000154	USB1	100	61.798	ENSPPRG00000024797	USB1	66	80.682	Panthera_pardus
ENSEEUG00000000154	USB1	100	61.049	ENSPTIG00000007506	USB1	66	80.114	Panthera_tigris_altaica
ENSEEUG00000000154	USB1	66	77.841	ENSPTRG00000008172	USB1	82	77.841	Pan_troglodytes
ENSEEUG00000000154	USB1	66	79.545	ENSPANG00000025138	USB1	66	79.545	Papio_anubis
ENSEEUG00000000154	USB1	64	49.412	ENSPKIG00000015109	usb1	58	49.412	Paramormyrops_kingsleyae
ENSEEUG00000000154	USB1	66	47.458	ENSPSIG00000004305	USB1	78	47.458	Pelodiscus_sinensis
ENSEEUG00000000154	USB1	65	43.023	ENSPMGG00000017725	usb1	66	43.023	Periophthalmus_magnuspinnatus
ENSEEUG00000000154	USB1	66	78.409	ENSPEMG00000016183	Usb1	65	78.409	Peromyscus_maniculatus_bairdii
ENSEEUG00000000154	USB1	65	44.767	ENSPMAG00000000462	usb1	73	44.767	Petromyzon_marinus
ENSEEUG00000000154	USB1	58	49.673	ENSPFOG00000011130	usb1	62	48.555	Poecilia_formosa
ENSEEUG00000000154	USB1	58	49.673	ENSPLAG00000009820	usb1	62	47.977	Poecilia_latipinna
ENSEEUG00000000154	USB1	58	49.673	ENSPMEG00000006402	usb1	62	48.555	Poecilia_mexicana
ENSEEUG00000000154	USB1	95	55.556	ENSPPYG00000007401	USB1	100	55.556	Pongo_abelii
ENSEEUG00000000154	USB1	100	61.132	ENSPCOG00000022612	USB1	66	79.545	Propithecus_coquereli
ENSEEUG00000000154	USB1	79	75.000	ENSPVAG00000004613	USB1	68	75.000	Pteropus_vampyrus
ENSEEUG00000000154	USB1	65	50.289	ENSPNYG00000022262	usb1	61	50.289	Pundamilia_nyererei
ENSEEUG00000000154	USB1	66	44.318	ENSPNAG00000011736	usb1	58	45.029	Pygocentrus_nattereri
ENSEEUG00000000154	USB1	66	76.705	ENSRNOG00000013216	Usb1	66	76.705	Rattus_norvegicus
ENSEEUG00000000154	USB1	66	79.545	ENSRBIG00000044466	USB1	82	79.545	Rhinopithecus_bieti
ENSEEUG00000000154	USB1	66	79.545	ENSRROG00000029211	USB1	66	79.545	Rhinopithecus_roxellana
ENSEEUG00000000154	USB1	66	78.409	ENSSBOG00000029362	USB1	66	78.409	Saimiri_boliviensis_boliviensis
ENSEEUG00000000154	USB1	66	63.636	ENSSHAG00000006993	USB1	70	63.636	Sarcophilus_harrisii
ENSEEUG00000000154	USB1	64	54.706	ENSSFOG00015023663	usb1	53	54.706	Scleropages_formosus
ENSEEUG00000000154	USB1	58	46.707	ENSSMAG00000015834	usb1	63	46.524	Scophthalmus_maximus
ENSEEUG00000000154	USB1	60	49.375	ENSSDUG00000002949	usb1	64	50.289	Seriola_dumerili
ENSEEUG00000000154	USB1	58	50.980	ENSSLDG00000014174	usb1	61	50.289	Seriola_lalandi_dorsalis
ENSEEUG00000000154	USB1	66	57.955	ENSSPUG00000006741	USB1	82	57.955	Sphenodon_punctatus
ENSEEUG00000000154	USB1	58	49.020	ENSSPAG00000007484	usb1	61	48.555	Stegastes_partitus
ENSEEUG00000000154	USB1	66	80.114	ENSSSCG00000002807	USB1	66	80.114	Sus_scrofa
ENSEEUG00000000154	USB1	60	61.250	ENSTGUG00000004792	USB1	69	61.143	Taeniopygia_guttata
ENSEEUG00000000154	USB1	66	45.455	ENSTRUG00000021069	usb1	65	45.455	Takifugu_rubripes
ENSEEUG00000000154	USB1	56	50.000	ENSTNIG00000000626	usb1	60	50.000	Tetraodon_nigroviridis
ENSEEUG00000000154	USB1	55	52.381	ENSTBEG00000001507	USB1	63	52.381	Tupaia_belangeri
ENSEEUG00000000154	USB1	100	59.851	ENSUAMG00000016823	USB1	65	77.841	Ursus_americanus
ENSEEUG00000000154	USB1	66	77.841	ENSUMAG00000021369	USB1	82	77.841	Ursus_maritimus
ENSEEUG00000000154	USB1	77	77.340	ENSVPAG00000009834	-	57	76.316	Vicugna_pacos
ENSEEUG00000000154	USB1	66	78.857	ENSVVUG00000023700	USB1	68	78.857	Vulpes_vulpes
ENSEEUG00000000154	USB1	65	47.977	ENSXETG00000013795	usb1	70	47.429	Xenopus_tropicalis
ENSEEUG00000000154	USB1	58	49.020	ENSXMAG00000024687	usb1	51	47.977	Xiphophorus_maculatus