EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000000471 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 13079 bases
Position: chrGeneScaffold_7142:5326-18404
Accession: 103107254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000000421	CPSF_A	PF03178.15	3e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000000473	CPSF1-201	4338	XM_007516030	ENSEEUP00000000421	1445 (aa)	XP_007516092	UPI0000F62CC2

Gene Model

Click here to download ENSEEUG00000000471's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000000471's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000000471	CPSF1	100	94.467	ENSG00000071894	CPSF1	100	94.467	Homo_sapiens
ENSEEUG00000000471	CPSF1	100	77.680	ENSAPOG00000019621	cpsf1	99	78.818	Acanthochromis_polyacanthus
ENSEEUG00000000471	CPSF1	96	94.809	ENSAMEG00000005557	CPSF1	99	94.809	Ailuropoda_melanoleuca
ENSEEUG00000000471	CPSF1	100	78.246	ENSACIG00000006112	cpsf1	100	78.453	Amphilophus_citrinellus
ENSEEUG00000000471	CPSF1	100	79.190	ENSAOCG00000007120	cpsf1	100	79.258	Amphiprion_ocellaris
ENSEEUG00000000471	CPSF1	100	79.436	ENSAPEG00000005755	cpsf1	100	79.642	Amphiprion_percula
ENSEEUG00000000471	CPSF1	100	77.508	ENSATEG00000011097	cpsf1	99	78.848	Anabas_testudineus
ENSEEUG00000000471	CPSF1	93	80.921	ENSACAG00000009655	CPSF1	100	80.921	Anolis_carolinensis
ENSEEUG00000000471	CPSF1	100	95.017	ENSANAG00000036514	CPSF1	100	95.017	Aotus_nancymaae
ENSEEUG00000000471	CPSF1	100	77.210	ENSACLG00000012231	cpsf1	99	79.070	Astatotilapia_calliptera
ENSEEUG00000000471	CPSF1	100	72.897	ENSAMXG00000008485	cpsf1	100	72.897	Astyanax_mexicanus
ENSEEUG00000000471	CPSF1	100	93.401	ENSBTAG00000008355	CPSF1	100	93.880	Bos_taurus
ENSEEUG00000000471	CPSF1	100	31.699	WBGene00022301	cpsf-1	100	40.000	Caenorhabditis_elegans
ENSEEUG00000000471	CPSF1	100	94.879	ENSCJAG00000021421	CPSF1	100	94.879	Callithrix_jacchus
ENSEEUG00000000471	CPSF1	96	96.179	ENSCAFG00000001600	CPSF1	100	95.578	Canis_familiaris
ENSEEUG00000000471	CPSF1	100	95.640	ENSCAFG00020020821	CPSF1	100	95.640	Canis_lupus_dingo
ENSEEUG00000000471	CPSF1	100	89.772	ENSCHIG00000015833	CPSF1	100	89.772	Capra_hircus
ENSEEUG00000000471	CPSF1	100	95.156	ENSTSYG00000028560	CPSF1	100	95.156	Carlito_syrichta
ENSEEUG00000000471	CPSF1	96	94.360	ENSCAPG00000014921	CPSF1	98	94.360	Cavia_aperea
ENSEEUG00000000471	CPSF1	100	93.084	ENSCPOG00000011448	CPSF1	100	93.084	Cavia_porcellus
ENSEEUG00000000471	CPSF1	100	94.948	ENSCCAG00000037658	CPSF1	100	94.948	Cebus_capucinus
ENSEEUG00000000471	CPSF1	100	94.602	ENSCATG00000037234	CPSF1	100	94.602	Cercocebus_atys
ENSEEUG00000000471	CPSF1	100	94.879	ENSCLAG00000012166	CPSF1	100	94.879	Chinchilla_lanigera
ENSEEUG00000000471	CPSF1	100	94.602	ENSCSAG00000008502	CPSF1	100	94.602	Chlorocebus_sabaeus
ENSEEUG00000000471	CPSF1	99	87.151	ENSCPBG00000018910	CPSF1	96	87.151	Chrysemys_picta_bellii
ENSEEUG00000000471	CPSF1	96	48.043	ENSCING00000000514	-	100	47.969	Ciona_intestinalis
ENSEEUG00000000471	CPSF1	99	47.910	ENSCSAVG00000002293	-	98	50.235	Ciona_savignyi
ENSEEUG00000000471	CPSF1	99	89.595	ENSCANG00000032760	CPSF1	99	89.595	Colobus_angolensis_palliatus
ENSEEUG00000000471	CPSF1	100	94.740	ENSCGRG00001016344	Cpsf1	100	94.740	Cricetulus_griseus_chok1gshd
ENSEEUG00000000471	CPSF1	100	92.388	ENSCGRG00000003118	Cpsf1	100	92.388	Cricetulus_griseus_crigri
ENSEEUG00000000471	CPSF1	100	77.194	ENSCSEG00000013464	cpsf1	100	77.125	Cynoglossus_semilaevis
ENSEEUG00000000471	CPSF1	85	77.065	ENSCVAG00000014059	cpsf1	100	75.000	Cyprinodon_variegatus
ENSEEUG00000000471	CPSF1	100	79.244	ENSDARG00000034178	cpsf1	100	79.313	Danio_rerio
ENSEEUG00000000471	CPSF1	57	94.203	ENSDNOG00000043654	CPSF1	94	94.203	Dasypus_novemcinctus
ENSEEUG00000000471	CPSF1	96	95.372	ENSDORG00000006278	Cpsf1	98	95.372	Dipodomys_ordii
ENSEEUG00000000471	CPSF1	100	45.168	FBgn0024698	Cpsf160	100	45.094	Drosophila_melanogaster
ENSEEUG00000000471	CPSF1	80	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSEEUG00000000471	CPSF1	100	95.986	ENSEASG00005010774	CPSF1	100	95.986	Equus_asinus_asinus
ENSEEUG00000000471	CPSF1	100	96.055	ENSECAG00000022209	CPSF1	100	96.055	Equus_caballus
ENSEEUG00000000471	CPSF1	100	77.922	ENSELUG00000012271	cpsf1	100	78.174	Esox_lucius
ENSEEUG00000000471	CPSF1	100	95.017	ENSFDAG00000016060	CPSF1	100	95.017	Fukomys_damarensis
ENSEEUG00000000471	CPSF1	100	76.426	ENSFHEG00000016801	cpsf1	100	76.495	Fundulus_heteroclitus
ENSEEUG00000000471	CPSF1	100	77.510	ENSGMOG00000000796	cpsf1	100	77.717	Gadus_morhua
ENSEEUG00000000471	CPSF1	96	82.143	ENSGAFG00000018890	cpsf1	100	82.143	Gambusia_affinis
ENSEEUG00000000471	CPSF1	100	78.458	ENSGACG00000008703	cpsf1	100	78.596	Gasterosteus_aculeatus
ENSEEUG00000000471	CPSF1	100	83.610	ENSGAGG00000004276	CPSF1	98	87.668	Gopherus_agassizii
ENSEEUG00000000471	CPSF1	100	94.671	ENSGGOG00000016185	CPSF1	100	94.671	Gorilla_gorilla
ENSEEUG00000000471	CPSF1	100	79.213	ENSHBUG00000018900	cpsf1	100	79.627	Haplochromis_burtoni
ENSEEUG00000000471	CPSF1	100	94.948	ENSHGLG00000016139	CPSF1	100	94.948	Heterocephalus_glaber_female
ENSEEUG00000000471	CPSF1	100	94.879	ENSHGLG00100009750	CPSF1	100	94.879	Heterocephalus_glaber_male
ENSEEUG00000000471	CPSF1	100	76.975	ENSHCOG00000018509	cpsf1	100	77.131	Hippocampus_comes
ENSEEUG00000000471	CPSF1	100	76.063	ENSIPUG00000011259	cpsf1	100	76.063	Ictalurus_punctatus
ENSEEUG00000000471	CPSF1	96	94.885	ENSSTOG00000009957	CPSF1	98	94.885	Ictidomys_tridecemlineatus
ENSEEUG00000000471	CPSF1	100	95.159	ENSJJAG00000023002	Cpsf1	100	95.159	Jaculus_jaculus
ENSEEUG00000000471	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSEEUG00000000471	CPSF1	100	76.923	ENSLBEG00000003601	cpsf1	100	77.193	Labrus_bergylta
ENSEEUG00000000471	CPSF1	88	81.010	ENSLACG00000000233	CPSF1	100	68.746	Latimeria_chalumnae
ENSEEUG00000000471	CPSF1	100	77.686	ENSLOCG00000008484	cpsf1	100	77.893	Lepisosteus_oculatus
ENSEEUG00000000471	CPSF1	96	94.232	ENSLAFG00000022601	CPSF1	99	94.232	Loxodonta_africana
ENSEEUG00000000471	CPSF1	100	94.602	ENSMFAG00000037013	CPSF1	100	94.602	Macaca_fascicularis
ENSEEUG00000000471	CPSF1	100	94.671	ENSMMUG00000007380	CPSF1	100	94.671	Macaca_mulatta
ENSEEUG00000000471	CPSF1	96	95.300	ENSMNEG00000043564	CPSF1	99	95.300	Macaca_nemestrina
ENSEEUG00000000471	CPSF1	100	94.671	ENSMLEG00000043010	CPSF1	100	94.671	Mandrillus_leucophaeus
ENSEEUG00000000471	CPSF1	100	78.152	ENSMAMG00000003803	cpsf1	99	79.521	Mastacembelus_armatus
ENSEEUG00000000471	CPSF1	100	77.279	ENSMZEG00005001168	cpsf1	100	77.693	Maylandia_zebra
ENSEEUG00000000471	CPSF1	100	94.602	ENSMAUG00000003601	Cpsf1	100	94.602	Mesocricetus_auratus
ENSEEUG00000000471	CPSF1	100	94.948	ENSMICG00000015767	CPSF1	100	94.948	Microcebus_murinus
ENSEEUG00000000471	CPSF1	100	94.740	ENSMOCG00000022758	Cpsf1	100	94.740	Microtus_ochrogaster
ENSEEUG00000000471	CPSF1	100	78.882	ENSMMOG00000021245	cpsf1	100	79.172	Mola_mola
ENSEEUG00000000471	CPSF1	100	92.000	ENSMODG00000010755	CPSF1	100	92.000	Monodelphis_domestica
ENSEEUG00000000471	CPSF1	100	77.313	ENSMALG00000020545	cpsf1	100	77.313	Monopterus_albus
ENSEEUG00000000471	CPSF1	100	94.740	MGP_CAROLIEiJ_G0019936	Cpsf1	100	94.740	Mus_caroli
ENSEEUG00000000471	CPSF1	100	94.671	ENSMUSG00000034022	Cpsf1	100	94.671	Mus_musculus
ENSEEUG00000000471	CPSF1	100	94.879	MGP_PahariEiJ_G0019946	Cpsf1	100	94.879	Mus_pahari
ENSEEUG00000000471	CPSF1	100	94.671	MGP_SPRETEiJ_G0020839	Cpsf1	100	94.671	Mus_spretus
ENSEEUG00000000471	CPSF1	93	95.407	ENSMPUG00000006419	CPSF1	93	95.407	Mustela_putorius_furo
ENSEEUG00000000471	CPSF1	100	94.879	ENSNGAG00000022460	Cpsf1	100	94.879	Nannospalax_galili
ENSEEUG00000000471	CPSF1	100	74.810	ENSNBRG00000000813	cpsf1	100	74.810	Neolamprologus_brichardi
ENSEEUG00000000471	CPSF1	86	82.336	ENSNLEG00000010633	-	100	87.963	Nomascus_leucogenys
ENSEEUG00000000471	CPSF1	82	96.512	ENSMEUG00000014922	CPSF1	84	96.512	Notamacropus_eugenii
ENSEEUG00000000471	CPSF1	60	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSEEUG00000000471	CPSF1	100	95.017	ENSODEG00000013995	CPSF1	100	95.017	Octodon_degus
ENSEEUG00000000471	CPSF1	100	79.627	ENSONIG00000007676	cpsf1	100	79.972	Oreochromis_niloticus
ENSEEUG00000000471	CPSF1	58	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSEEUG00000000471	CPSF1	100	77.001	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSEEUG00000000471	CPSF1	100	77.137	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSEEUG00000000471	CPSF1	100	77.153	ENSORLG00015009979	cpsf1	100	77.220	Oryzias_latipes_hsok
ENSEEUG00000000471	CPSF1	100	77.446	ENSOMEG00000011849	cpsf1	100	77.649	Oryzias_melastigma
ENSEEUG00000000471	CPSF1	100	94.810	ENSOGAG00000000315	CPSF1	100	94.810	Otolemur_garnettii
ENSEEUG00000000471	CPSF1	100	94.671	ENSPPAG00000019280	CPSF1	100	94.671	Pan_paniscus
ENSEEUG00000000471	CPSF1	100	93.061	ENSPTRG00000051253	-	100	93.061	Pan_troglodytes
ENSEEUG00000000471	CPSF1	100	94.671	ENSPTRG00000049288	-	100	94.671	Pan_troglodytes
ENSEEUG00000000471	CPSF1	96	95.300	ENSPANG00000015005	CPSF1	99	95.300	Papio_anubis
ENSEEUG00000000471	CPSF1	100	80.055	ENSPKIG00000002582	cpsf1	100	81.122	Paramormyrops_kingsleyae
ENSEEUG00000000471	CPSF1	100	91.931	ENSPCIG00000009035	CPSF1	100	91.931	Phascolarctos_cinereus
ENSEEUG00000000471	CPSF1	100	76.435	ENSPFOG00000012870	cpsf1	100	76.367	Poecilia_formosa
ENSEEUG00000000471	CPSF1	100	76.248	ENSPREG00000016307	cpsf1	100	76.181	Poecilia_reticulata
ENSEEUG00000000471	CPSF1	100	86.644	ENSPPYG00000018973	CPSF1	100	86.644	Pongo_abelii
ENSEEUG00000000471	CPSF1	90	94.318	ENSPCAG00000011541	CPSF1	93	94.318	Procavia_capensis
ENSEEUG00000000471	CPSF1	100	90.871	ENSPCOG00000020001	CPSF1	100	90.871	Propithecus_coquereli
ENSEEUG00000000471	CPSF1	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSEEUG00000000471	CPSF1	100	78.258	ENSPNYG00000004906	cpsf1	100	78.596	Pundamilia_nyererei
ENSEEUG00000000471	CPSF1	100	74.811	ENSPNAG00000024395	cpsf1	100	74.811	Pygocentrus_nattereri
ENSEEUG00000000471	CPSF1	100	94.740	ENSRNOG00000030705	Cpsf1	100	94.740	Rattus_norvegicus
ENSEEUG00000000471	CPSF1	100	94.602	ENSRBIG00000044907	CPSF1	100	94.602	Rhinopithecus_bieti
ENSEEUG00000000471	CPSF1	100	94.533	ENSRROG00000044861	CPSF1	100	94.533	Rhinopithecus_roxellana
ENSEEUG00000000471	CPSF1	96	95.445	ENSSBOG00000027177	CPSF1	99	95.445	Saimiri_boliviensis_boliviensis
ENSEEUG00000000471	CPSF1	100	91.793	ENSSHAG00000006500	CPSF1	100	91.793	Sarcophilus_harrisii
ENSEEUG00000000471	CPSF1	100	78.007	ENSSFOG00015004606	cpsf1	100	81.382	Scleropages_formosus
ENSEEUG00000000471	CPSF1	100	77.515	ENSSMAG00000020547	cpsf1	100	77.853	Scophthalmus_maximus
ENSEEUG00000000471	CPSF1	100	78.966	ENSSDUG00000001100	cpsf1	100	79.172	Seriola_dumerili
ENSEEUG00000000471	CPSF1	100	79.158	ENSSLDG00000003619	cpsf1	100	79.434	Seriola_lalandi_dorsalis
ENSEEUG00000000471	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSEEUG00000000471	CPSF1	96	87.229	ENSSPUG00000014396	CPSF1	99	87.355	Sphenodon_punctatus
ENSEEUG00000000471	CPSF1	100	77.868	ENSSPAG00000005349	cpsf1	100	77.868	Stegastes_partitus
ENSEEUG00000000471	CPSF1	100	94.533	ENSSSCG00000005906	CPSF1	100	94.533	Sus_scrofa
ENSEEUG00000000471	CPSF1	96	78.081	ENSTRUG00000013134	cpsf1	99	78.291	Takifugu_rubripes
ENSEEUG00000000471	CPSF1	100	78.395	ENSTNIG00000014027	cpsf1	100	78.464	Tetraodon_nigroviridis
ENSEEUG00000000471	CPSF1	77	87.650	ENSTBEG00000001756	CPSF1	91	87.650	Tupaia_belangeri
ENSEEUG00000000471	CPSF1	90	95.337	ENSTTRG00000001937	CPSF1	90	95.337	Tursiops_truncatus
ENSEEUG00000000471	CPSF1	96	96.467	ENSUAMG00000006476	CPSF1	97	96.467	Ursus_americanus
ENSEEUG00000000471	CPSF1	100	77.502	ENSXCOG00000003608	cpsf1	100	77.778	Xiphophorus_couchianus
ENSEEUG00000000471	CPSF1	100	77.050	ENSXMAG00000005798	cpsf1	100	77.188	Xiphophorus_maculatus