EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEEUG00000001154 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Plus strand
Length: 27706 bases
Position: chrGeneScaffold_7628:802-28507
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000001041	RNA_pol_Rpb1_5	PF04998.17	2.4e-101	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_R	PF05001.13	6.7e-05	1	5
ENSEEUP00000001041	RNA_pol_Rpb1_R	PF05001.13	6.7e-05	2	5
ENSEEUP00000001041	RNA_pol_Rpb1_R	PF05001.13	6.7e-05	3	5
ENSEEUP00000001041	RNA_pol_Rpb1_R	PF05001.13	6.7e-05	4	5
ENSEEUP00000001041	RNA_pol_Rpb1_R	PF05001.13	6.7e-05	5	5
ENSEEUP00000001041	RNA_pol_Rpb1_4	PF05000.17	1.6e-38	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_2	PF00623.20	1.3e-73	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_3	PF04983.18	3.4e-50	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_1	PF04997.12	3.7e-109	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_7	PF04990.12	9.8e-55	1	1
ENSEEUP00000001041	RNA_pol_Rpb1_6	PF04992.14	6.2e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000001158	-	4911	-	ENSEEUP00000001041	1637 (aa)	-	UPI0000F61D9E

Gene Model

Click here to download ENSEEUG00000001154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000001154's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEEUG00000001154	-	78	36.442	ENSEEUG00000001774	POLR3A	92	36.442
ENSEEUG00000001154	-	60	38.889	ENSEEUG00000000676	POLR1A	59	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000001154	-	92	94.526	ENSAPOG00000006552	polr2a	83	94.526	Acanthochromis_polyacanthus
ENSEEUG00000001154	-	95	99.599	ENSAMEG00000016265	-	87	99.599	Ailuropoda_melanoleuca
ENSEEUG00000001154	-	95	94.660	ENSACIG00000015982	polr2a	85	94.660	Amphilophus_citrinellus
ENSEEUG00000001154	-	95	94.459	ENSAOCG00000004255	polr2a	83	94.459	Amphiprion_ocellaris
ENSEEUG00000001154	-	95	94.459	ENSAPEG00000012623	polr2a	85	94.459	Amphiprion_percula
ENSEEUG00000001154	-	95	94.326	ENSATEG00000019644	polr2a	85	94.326	Anabas_testudineus
ENSEEUG00000001154	-	95	97.864	ENSACAG00000014561	POLR2A	87	97.864	Anolis_carolinensis
ENSEEUG00000001154	-	95	99.800	ENSANAG00000020093	-	88	99.800	Aotus_nancymaae
ENSEEUG00000001154	-	95	94.192	ENSACLG00000006735	polr2a	85	94.192	Astatotilapia_calliptera
ENSEEUG00000001154	-	95	94.593	ENSAMXG00000020046	polr2a	85	94.593	Astyanax_mexicanus
ENSEEUG00000001154	-	95	99.800	ENSBTAG00000046765	POLR2A	87	99.800	Bos_taurus
ENSEEUG00000001154	-	94	73.810	WBGene00000123	ama-1	80	72.151	Caenorhabditis_elegans
ENSEEUG00000001154	-	95	99.733	ENSCAFG00000016532	POLR2A	94	99.733	Canis_familiaris
ENSEEUG00000001154	-	95	98.865	ENSCAFG00020007929	-	88	98.865	Canis_lupus_dingo
ENSEEUG00000001154	-	95	99.800	ENSCHIG00000027173	-	87	99.800	Capra_hircus
ENSEEUG00000001154	-	95	99.800	ENSTSYG00000012803	-	88	99.800	Carlito_syrichta
ENSEEUG00000001154	-	93	99.523	ENSCAPG00000001882	-	87	99.523	Cavia_aperea
ENSEEUG00000001154	-	95	99.533	ENSCPOG00000014812	-	89	99.533	Cavia_porcellus
ENSEEUG00000001154	-	95	99.800	ENSCCAG00000020938	-	88	99.800	Cebus_capucinus
ENSEEUG00000001154	-	95	99.733	ENSCATG00000013680	-	88	98.865	Cercocebus_atys
ENSEEUG00000001154	-	95	99.599	ENSCLAG00000012196	-	89	99.599	Chinchilla_lanigera
ENSEEUG00000001154	-	95	89.854	ENSCSAG00000011644	-	84	96.078	Chlorocebus_sabaeus
ENSEEUG00000001154	-	95	96.078	ENSCPBG00000012697	POLR2A	94	94.294	Chrysemys_picta_bellii
ENSEEUG00000001154	-	94	78.404	ENSCING00000007884	-	82	78.404	Ciona_intestinalis
ENSEEUG00000001154	-	94	77.689	ENSCSAVG00000008334	-	97	84.314	Ciona_savignyi
ENSEEUG00000001154	-	95	98.865	ENSCANG00000010622	-	89	97.886	Colobus_angolensis_palliatus
ENSEEUG00000001154	-	95	96.929	ENSCGRG00001003538	Polr2a	89	96.929	Cricetulus_griseus_chok1gshd
ENSEEUG00000001154	-	95	99.800	ENSCGRG00000012105	Polr2a	91	99.800	Cricetulus_griseus_crigri
ENSEEUG00000001154	-	95	93.591	ENSCSEG00000002635	polr2a	85	93.591	Cynoglossus_semilaevis
ENSEEUG00000001154	-	95	94.526	ENSCVAG00000005156	polr2a	83	94.526	Cyprinodon_variegatus
ENSEEUG00000001154	-	95	94.393	ENSDARG00000099966	polr2a	83	94.393	Danio_rerio
ENSEEUG00000001154	-	95	96.078	ENSDNOG00000016482	-	87	96.078	Dasypus_novemcinctus
ENSEEUG00000001154	-	95	99.800	ENSDORG00000008667	Polr2a	88	99.800	Dipodomys_ordii
ENSEEUG00000001154	-	94	76.991	FBgn0003277	RpII215	78	76.991	Drosophila_melanogaster
ENSEEUG00000001154	-	87	96.008	ENSETEG00000002540	-	73	96.008	Echinops_telfairi
ENSEEUG00000001154	-	94	88.665	ENSEBUG00000013967	polr2a	78	88.665	Eptatretus_burgeri
ENSEEUG00000001154	-	95	97.597	ENSEASG00005019114	-	89	97.597	Equus_asinus_asinus
ENSEEUG00000001154	-	95	99.800	ENSECAG00000018485	POLR2A	87	99.800	Equus_caballus
ENSEEUG00000001154	-	95	92.639	ENSELUG00000014284	polr2a	82	92.639	Esox_lucius
ENSEEUG00000001154	-	95	99.733	ENSFDAG00000008287	-	88	99.733	Fukomys_damarensis
ENSEEUG00000001154	-	95	94.526	ENSFHEG00000001768	polr2a	85	94.526	Fundulus_heteroclitus
ENSEEUG00000001154	-	91	92.981	ENSGMOG00000007725	polr2a	90	92.981	Gadus_morhua
ENSEEUG00000001154	-	95	94.459	ENSGAFG00000005389	polr2a	90	94.459	Gambusia_affinis
ENSEEUG00000001154	-	94	93.173	ENSGACG00000019366	polr2a	90	93.173	Gasterosteus_aculeatus
ENSEEUG00000001154	-	95	98.999	ENSGGOG00000014800	-	96	97.972	Gorilla_gorilla
ENSEEUG00000001154	-	95	94.192	ENSHBUG00000018937	polr2a	86	94.192	Haplochromis_burtoni
ENSEEUG00000001154	-	95	99.733	ENSHGLG00000012381	POLR2A	88	99.733	Heterocephalus_glaber_female
ENSEEUG00000001154	-	95	99.733	ENSHGLG00100014843	POLR2A	88	99.733	Heterocephalus_glaber_male
ENSEEUG00000001154	-	95	93.792	ENSHCOG00000011874	polr2a	83	93.792	Hippocampus_comes
ENSEEUG00000001154	-	95	93.925	ENSIPUG00000002613	Polr2a	85	93.925	Ictalurus_punctatus
ENSEEUG00000001154	-	95	99.800	ENSSTOG00000001304	-	88	99.800	Ictidomys_tridecemlineatus
ENSEEUG00000001154	-	95	99.666	ENSJJAG00000013049	Polr2a	88	99.666	Jaculus_jaculus
ENSEEUG00000001154	-	92	85.296	ENSKMAG00000016343	polr2a	80	85.296	Kryptolebias_marmoratus
ENSEEUG00000001154	-	95	94.059	ENSLBEG00000027652	polr2a	85	94.059	Labrus_bergylta
ENSEEUG00000001154	-	93	86.376	ENSLACG00000012071	POLR2A	84	96.078	Latimeria_chalumnae
ENSEEUG00000001154	-	95	94.660	ENSLOCG00000013863	polr2a	85	94.660	Lepisosteus_oculatus
ENSEEUG00000001154	-	95	99.800	ENSLAFG00000008626	-	87	99.800	Loxodonta_africana
ENSEEUG00000001154	-	60	98.163	ENSMFAG00000007042	-	99	98.163	Macaca_fascicularis
ENSEEUG00000001154	-	95	99.733	ENSMMUG00000023620	-	88	99.733	Macaca_mulatta
ENSEEUG00000001154	-	95	99.266	ENSMNEG00000040407	-	88	99.266	Macaca_nemestrina
ENSEEUG00000001154	-	95	96.078	ENSMLEG00000030263	-	99	98.163	Mandrillus_leucophaeus
ENSEEUG00000001154	-	95	94.192	ENSMAMG00000003351	polr2a	83	94.192	Mastacembelus_armatus
ENSEEUG00000001154	-	95	94.192	ENSMZEG00005021429	polr2a	85	93.191	Maylandia_zebra
ENSEEUG00000001154	-	60	99.796	ENSMAUG00000021055	-	99	99.796	Mesocricetus_auratus
ENSEEUG00000001154	-	95	99.666	ENSMICG00000013372	-	98	98.569	Microcebus_murinus
ENSEEUG00000001154	-	95	97.535	ENSMOCG00000018279	Polr2a	87	97.535	Microtus_ochrogaster
ENSEEUG00000001154	-	94	93.725	ENSMMOG00000012515	polr2a	83	93.725	Mola_mola
ENSEEUG00000001154	-	95	99.266	ENSMODG00000007009	-	87	99.266	Monodelphis_domestica
ENSEEUG00000001154	-	95	94.393	ENSMALG00000008716	polr2a	89	94.393	Monopterus_albus
ENSEEUG00000001154	-	95	99.800	MGP_CAROLIEiJ_G0016587	Polr2a	88	99.800	Mus_caroli
ENSEEUG00000001154	-	95	99.800	ENSMUSG00000005198	Polr2a	88	99.800	Mus_musculus
ENSEEUG00000001154	-	95	97.409	MGP_PahariEiJ_G0017718	Polr2a	87	97.409	Mus_pahari
ENSEEUG00000001154	-	95	99.800	MGP_SPRETEiJ_G0017423	Polr2a	88	99.800	Mus_spretus
ENSEEUG00000001154	-	95	99.666	ENSMPUG00000009648	-	87	99.666	Mustela_putorius_furo
ENSEEUG00000001154	-	95	99.133	ENSMLUG00000009088	-	87	99.133	Myotis_lucifugus
ENSEEUG00000001154	-	95	99.800	ENSNGAG00000002543	Polr2a	88	99.800	Nannospalax_galili
ENSEEUG00000001154	-	95	94.259	ENSNBRG00000002005	polr2a	85	94.259	Neolamprologus_brichardi
ENSEEUG00000001154	-	95	99.800	ENSNLEG00000009460	-	88	99.800	Nomascus_leucogenys
ENSEEUG00000001154	-	92	90.921	ENSMEUG00000008611	-	89	90.921	Notamacropus_eugenii
ENSEEUG00000001154	-	92	99.533	ENSOPRG00000015116	-	94	99.533	Ochotona_princeps
ENSEEUG00000001154	-	95	99.599	ENSODEG00000017674	-	91	99.599	Octodon_degus
ENSEEUG00000001154	-	95	94.393	ENSONIG00000009231	polr2a	83	94.393	Oreochromis_niloticus
ENSEEUG00000001154	-	57	97.749	ENSOANG00000003303	-	98	97.749	Ornithorhynchus_anatinus
ENSEEUG00000001154	-	95	99.733	ENSOCUG00000017929	-	89	99.666	Oryctolagus_cuniculus
ENSEEUG00000001154	-	95	94.126	ENSORLG00000006431	polr2a	85	94.126	Oryzias_latipes
ENSEEUG00000001154	-	95	94.126	ENSORLG00020010235	polr2a	85	94.126	Oryzias_latipes_hni
ENSEEUG00000001154	-	95	94.126	ENSORLG00015007075	polr2a	85	94.126	Oryzias_latipes_hsok
ENSEEUG00000001154	-	92	94.259	ENSOMEG00000010713	polr2a	96	94.259	Oryzias_melastigma
ENSEEUG00000001154	-	95	99.599	ENSOGAG00000033608	-	87	99.599	Otolemur_garnettii
ENSEEUG00000001154	-	95	99.800	ENSOARG00000013874	-	90	99.800	Ovis_aries
ENSEEUG00000001154	-	95	99.800	ENSPPAG00000043734	-	89	99.800	Pan_paniscus
ENSEEUG00000001154	-	95	99.800	ENSPTRG00000008691	POLR2A	88	99.800	Pan_troglodytes
ENSEEUG00000001154	-	95	98.865	ENSPANG00000024099	-	88	98.865	Papio_anubis
ENSEEUG00000001154	-	88	92.697	ENSPKIG00000005727	polr2a	80	92.697	Paramormyrops_kingsleyae
ENSEEUG00000001154	-	91	96.197	ENSPSIG00000014006	POLR2A	91	96.197	Pelodiscus_sinensis
ENSEEUG00000001154	-	95	94.459	ENSPMGG00000019734	polr2a	95	96.067	Periophthalmus_magnuspinnatus
ENSEEUG00000001154	-	95	99.800	ENSPEMG00000012521	Polr2a	88	99.800	Peromyscus_maniculatus_bairdii
ENSEEUG00000001154	-	92	99.266	ENSPCIG00000028851	-	76	99.266	Phascolarctos_cinereus
ENSEEUG00000001154	-	95	94.459	ENSPFOG00000007890	polr2a	86	94.459	Poecilia_formosa
ENSEEUG00000001154	-	95	94.459	ENSPLAG00000007399	polr2a	86	94.459	Poecilia_latipinna
ENSEEUG00000001154	-	95	94.459	ENSPMEG00000002071	polr2a	87	94.459	Poecilia_mexicana
ENSEEUG00000001154	-	95	94.393	ENSPREG00000013122	polr2a	85	94.393	Poecilia_reticulata
ENSEEUG00000001154	-	95	99.800	ENSPPYG00000007924	-	86	99.800	Pongo_abelii
ENSEEUG00000001154	-	85	99.606	ENSPCAG00000006951	-	79	99.606	Procavia_capensis
ENSEEUG00000001154	-	95	99.733	ENSPCOG00000025260	-	88	99.733	Propithecus_coquereli
ENSEEUG00000001154	-	95	99.466	ENSPVAG00000005069	-	87	99.466	Pteropus_vampyrus
ENSEEUG00000001154	-	95	94.259	ENSPNYG00000022340	polr2a	84	94.363	Pundamilia_nyererei
ENSEEUG00000001154	-	95	94.593	ENSPNAG00000011237	polr2a	83	94.593	Pygocentrus_nattereri
ENSEEUG00000001154	-	95	99.733	ENSRNOG00000028834	Polr2a	87	99.733	Rattus_norvegicus
ENSEEUG00000001154	-	95	99.733	ENSRBIG00000002471	-	88	99.733	Rhinopithecus_bieti
ENSEEUG00000001154	-	95	99.733	ENSRROG00000029583	-	87	99.733	Rhinopithecus_roxellana
ENSEEUG00000001154	-	91	80.000	YDL140C	RPO21	92	86.275	Saccharomyces_cerevisiae
ENSEEUG00000001154	-	95	99.800	ENSSBOG00000000808	-	88	99.800	Saimiri_boliviensis_boliviensis
ENSEEUG00000001154	-	95	99.266	ENSSHAG00000002858	-	86	99.266	Sarcophilus_harrisii
ENSEEUG00000001154	-	95	94.393	ENSSFOG00015023275	polr2a	85	94.393	Scleropages_formosus
ENSEEUG00000001154	-	95	93.858	ENSSMAG00000009137	polr2a	83	93.858	Scophthalmus_maximus
ENSEEUG00000001154	-	95	94.326	ENSSDUG00000020466	polr2a	85	94.326	Seriola_dumerili
ENSEEUG00000001154	-	95	94.326	ENSSLDG00000020613	polr2a	85	94.326	Seriola_lalandi_dorsalis
ENSEEUG00000001154	-	92	95.861	ENSSARG00000005875	-	89	95.861	Sorex_araneus
ENSEEUG00000001154	-	95	94.393	ENSSPAG00000016741	polr2a	79	94.393	Stegastes_partitus
ENSEEUG00000001154	-	95	98.798	ENSSSCG00000028278	-	87	98.798	Sus_scrofa
ENSEEUG00000001154	-	92	85.857	ENSTRUG00000012320	polr2a	75	85.857	Takifugu_rubripes
ENSEEUG00000001154	-	94	92.657	ENSTNIG00000010136	polr2a	86	92.657	Tetraodon_nigroviridis
ENSEEUG00000001154	-	68	99.869	ENSTBEG00000013294	-	53	99.869	Tupaia_belangeri
ENSEEUG00000001154	-	95	97.730	ENSTTRG00000014273	-	87	97.730	Tursiops_truncatus
ENSEEUG00000001154	-	95	99.334	ENSUAMG00000014866	-	93	99.334	Ursus_americanus
ENSEEUG00000001154	-	86	99.441	ENSUMAG00000015732	-	88	99.441	Ursus_maritimus
ENSEEUG00000001154	-	52	100.000	ENSVPAG00000008842	-	65	100.000	Vicugna_pacos
ENSEEUG00000001154	-	95	99.733	ENSVVUG00000027878	-	87	99.733	Vulpes_vulpes
ENSEEUG00000001154	-	93	96.816	ENSXETG00000012465	polr2a	88	96.816	Xenopus_tropicalis
ENSEEUG00000001154	-	95	94.393	ENSXCOG00000001804	polr2a	94	94.393	Xiphophorus_couchianus
ENSEEUG00000001154	-	95	94.393	ENSXMAG00000015687	polr2a	85	94.393	Xiphophorus_maculatus