EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000002101 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Plus strand
Length: 6715 bases
Position: chrscaffold_378672:84862-91576
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000001907	LSM	PF01423.22	6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000002093	LSM6-201	237	-	ENSEEUP00000001907	78 (aa)	-	UPI0000F631E7

Gene Model

Click here to download ENSEEUG00000002101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000002101's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000002101	LSM6	100	72.152	ENSG00000164167	LSM6	99	72.152	Homo_sapiens
ENSEEUG00000002101	LSM6	100	67.089	ENSAPOG00000019832	lsm6	99	67.089	Acanthochromis_polyacanthus
ENSEEUG00000002101	LSM6	100	72.152	ENSAMEG00000016671	LSM6	99	72.152	Ailuropoda_melanoleuca
ENSEEUG00000002101	LSM6	100	67.089	ENSACIG00000016711	lsm6	99	67.089	Amphilophus_citrinellus
ENSEEUG00000002101	LSM6	100	67.089	ENSAOCG00000002110	lsm6	51	67.089	Amphiprion_ocellaris
ENSEEUG00000002101	LSM6	100	67.089	ENSAPEG00000023992	lsm6	99	67.089	Amphiprion_percula
ENSEEUG00000002101	LSM6	100	67.089	ENSATEG00000012610	lsm6	99	67.089	Anabas_testudineus
ENSEEUG00000002101	LSM6	97	71.429	ENSAPLG00000012594	LSM6	99	71.429	Anas_platyrhynchos
ENSEEUG00000002101	LSM6	100	72.152	ENSACAG00000004004	LSM6	99	72.152	Anolis_carolinensis
ENSEEUG00000002101	LSM6	100	72.152	ENSANAG00000030568	-	99	72.152	Aotus_nancymaae
ENSEEUG00000002101	LSM6	100	59.494	ENSANAG00000021839	-	99	59.494	Aotus_nancymaae
ENSEEUG00000002101	LSM6	100	67.089	ENSACLG00000025621	lsm6	99	67.089	Astatotilapia_calliptera
ENSEEUG00000002101	LSM6	100	68.354	ENSAMXG00000038738	lsm6	99	68.354	Astyanax_mexicanus
ENSEEUG00000002101	LSM6	100	67.089	ENSBTAG00000052085	-	99	67.089	Bos_taurus
ENSEEUG00000002101	LSM6	100	72.152	ENSBTAG00000014060	LSM6	99	72.152	Bos_taurus
ENSEEUG00000002101	LSM6	59	86.957	WBGene00003080	lsm-6	60	86.957	Caenorhabditis_elegans
ENSEEUG00000002101	LSM6	100	72.152	ENSCJAG00000002482	LSM6	99	72.152	Callithrix_jacchus
ENSEEUG00000002101	LSM6	100	72.152	ENSCAFG00000007738	LSM6	99	72.152	Canis_familiaris
ENSEEUG00000002101	LSM6	100	72.152	ENSCAFG00020025902	LSM6	99	72.152	Canis_lupus_dingo
ENSEEUG00000002101	LSM6	88	68.571	ENSCHIG00000012864	-	99	68.571	Capra_hircus
ENSEEUG00000002101	LSM6	100	59.494	ENSCHIG00000024198	-	93	59.494	Capra_hircus
ENSEEUG00000002101	LSM6	100	72.152	ENSCHIG00000010334	-	99	72.152	Capra_hircus
ENSEEUG00000002101	LSM6	62	79.167	ENSTSYG00000012759	-	54	79.167	Carlito_syrichta
ENSEEUG00000002101	LSM6	100	72.152	ENSTSYG00000026972	LSM6	99	72.152	Carlito_syrichta
ENSEEUG00000002101	LSM6	100	72.152	ENSCAPG00000008104	LSM6	99	72.152	Cavia_aperea
ENSEEUG00000002101	LSM6	81	62.500	ENSCAPG00000011179	-	98	62.500	Cavia_aperea
ENSEEUG00000002101	LSM6	100	72.152	ENSCPOG00000032655	LSM6	99	72.152	Cavia_porcellus
ENSEEUG00000002101	LSM6	100	72.152	ENSCCAG00000036437	LSM6	99	72.152	Cebus_capucinus
ENSEEUG00000002101	LSM6	99	70.513	ENSCCAG00000020665	-	98	70.513	Cebus_capucinus
ENSEEUG00000002101	LSM6	100	48.101	ENSCATG00000038799	-	99	48.101	Cercocebus_atys
ENSEEUG00000002101	LSM6	100	72.152	ENSCATG00000002770	-	99	72.152	Cercocebus_atys
ENSEEUG00000002101	LSM6	100	72.152	ENSCLAG00000005495	LSM6	99	72.152	Chinchilla_lanigera
ENSEEUG00000002101	LSM6	50	79.487	ENSCLAG00000005685	-	54	79.487	Chinchilla_lanigera
ENSEEUG00000002101	LSM6	100	72.152	ENSCSAG00000003421	LSM6	99	72.152	Chlorocebus_sabaeus
ENSEEUG00000002101	LSM6	100	50.633	ENSCHOG00000003420	LSM6	98	50.633	Choloepus_hoffmanni
ENSEEUG00000002101	LSM6	100	72.152	ENSCPBG00000027472	LSM6	83	72.152	Chrysemys_picta_bellii
ENSEEUG00000002101	LSM6	96	67.105	ENSCING00000019152	-	93	67.105	Ciona_intestinalis
ENSEEUG00000002101	LSM6	96	68.421	ENSCSAVG00000002065	-	93	68.421	Ciona_savignyi
ENSEEUG00000002101	LSM6	100	46.835	ENSCANG00000035214	-	99	46.835	Colobus_angolensis_palliatus
ENSEEUG00000002101	LSM6	100	72.152	ENSCANG00000006849	-	99	72.152	Colobus_angolensis_palliatus
ENSEEUG00000002101	LSM6	100	72.152	ENSCANG00000041263	-	99	72.152	Colobus_angolensis_palliatus
ENSEEUG00000002101	LSM6	100	72.152	ENSCGRG00001017142	Lsm6	99	72.152	Cricetulus_griseus_chok1gshd
ENSEEUG00000002101	LSM6	100	72.152	ENSCGRG00000008320	Lsm6	99	72.152	Cricetulus_griseus_crigri
ENSEEUG00000002101	LSM6	100	67.089	ENSCSEG00000000423	lsm6	99	67.089	Cynoglossus_semilaevis
ENSEEUG00000002101	LSM6	100	67.089	ENSCVAG00000001592	lsm6	99	67.089	Cyprinodon_variegatus
ENSEEUG00000002101	LSM6	100	68.354	ENSDARG00000036995	lsm6	99	68.354	Danio_rerio
ENSEEUG00000002101	LSM6	100	70.886	ENSDNOG00000044848	-	99	70.886	Dasypus_novemcinctus
ENSEEUG00000002101	LSM6	86	67.647	ENSDNOG00000040186	-	73	67.647	Dasypus_novemcinctus
ENSEEUG00000002101	LSM6	100	72.152	ENSDORG00000000933	Lsm6	99	72.152	Dipodomys_ordii
ENSEEUG00000002101	LSM6	62	95.833	FBgn0034564	CG9344	61	95.833	Drosophila_melanogaster
ENSEEUG00000002101	LSM6	62	100.000	ENSETEG00000013098	LSM6	100	100.000	Echinops_telfairi
ENSEEUG00000002101	LSM6	100	70.886	ENSEBUG00000017073	lsm6	99	70.886	Eptatretus_burgeri
ENSEEUG00000002101	LSM6	86	67.647	ENSEASG00005001533	LSM6	71	67.647	Equus_asinus_asinus
ENSEEUG00000002101	LSM6	100	72.152	ENSECAG00000021036	LSM6	99	72.152	Equus_caballus
ENSEEUG00000002101	LSM6	100	68.354	ENSELUG00000014301	LSM6	99	68.354	Esox_lucius
ENSEEUG00000002101	LSM6	100	72.152	ENSFCAG00000003047	LSM6	99	72.152	Felis_catus
ENSEEUG00000002101	LSM6	100	72.152	ENSFALG00000005509	LSM6	91	72.152	Ficedula_albicollis
ENSEEUG00000002101	LSM6	100	63.291	ENSFDAG00000019073	-	99	63.291	Fukomys_damarensis
ENSEEUG00000002101	LSM6	100	72.152	ENSFDAG00000020913	-	99	72.152	Fukomys_damarensis
ENSEEUG00000002101	LSM6	100	67.089	ENSFHEG00000007948	lsm6	99	67.089	Fundulus_heteroclitus
ENSEEUG00000002101	LSM6	100	67.089	ENSGMOG00000015550	lsm6	99	67.089	Gadus_morhua
ENSEEUG00000002101	LSM6	100	72.152	ENSGALG00000009985	LSM6	99	72.152	Gallus_gallus
ENSEEUG00000002101	LSM6	100	67.089	ENSGAFG00000017763	lsm6	99	67.089	Gambusia_affinis
ENSEEUG00000002101	LSM6	99	67.949	ENSGACG00000017223	lsm6	98	67.949	Gasterosteus_aculeatus
ENSEEUG00000002101	LSM6	100	72.152	ENSGAGG00000020980	LSM6	99	72.152	Gopherus_agassizii
ENSEEUG00000002101	LSM6	100	72.152	ENSGGOG00000001310	LSM6	99	72.152	Gorilla_gorilla
ENSEEUG00000002101	LSM6	100	67.089	ENSHBUG00000008618	lsm6	99	67.089	Haplochromis_burtoni
ENSEEUG00000002101	LSM6	100	72.152	ENSHGLG00000000205	LSM6	99	72.152	Heterocephalus_glaber_female
ENSEEUG00000002101	LSM6	100	72.152	ENSHGLG00100014341	LSM6	99	72.152	Heterocephalus_glaber_male
ENSEEUG00000002101	LSM6	100	67.089	ENSHCOG00000005591	lsm6	99	67.089	Hippocampus_comes
ENSEEUG00000002101	LSM6	100	67.089	ENSIPUG00000004508	lsm6	99	67.089	Ictalurus_punctatus
ENSEEUG00000002101	LSM6	100	72.152	ENSSTOG00000002678	LSM6	99	72.152	Ictidomys_tridecemlineatus
ENSEEUG00000002101	LSM6	62	91.667	ENSJJAG00000016942	-	66	91.667	Jaculus_jaculus
ENSEEUG00000002101	LSM6	100	72.152	ENSJJAG00000013845	-	99	72.152	Jaculus_jaculus
ENSEEUG00000002101	LSM6	99	65.385	ENSJJAG00000011211	-	98	65.385	Jaculus_jaculus
ENSEEUG00000002101	LSM6	100	67.089	ENSKMAG00000004105	lsm6	99	67.089	Kryptolebias_marmoratus
ENSEEUG00000002101	LSM6	100	67.089	ENSLBEG00000018441	lsm6	99	67.089	Labrus_bergylta
ENSEEUG00000002101	LSM6	100	72.152	ENSLACG00000006937	LSM6	99	72.152	Latimeria_chalumnae
ENSEEUG00000002101	LSM6	100	68.354	ENSLOCG00000017683	-	99	68.354	Lepisosteus_oculatus
ENSEEUG00000002101	LSM6	100	68.354	ENSLOCG00000008852	lsm6	99	68.354	Lepisosteus_oculatus
ENSEEUG00000002101	LSM6	100	72.152	ENSLAFG00000001952	LSM6	99	72.152	Loxodonta_africana
ENSEEUG00000002101	LSM6	100	72.152	ENSMFAG00000033073	LSM6	99	72.152	Macaca_fascicularis
ENSEEUG00000002101	LSM6	100	72.152	ENSMNEG00000034820	-	99	72.152	Macaca_nemestrina
ENSEEUG00000002101	LSM6	100	49.367	ENSMNEG00000040412	-	99	49.367	Macaca_nemestrina
ENSEEUG00000002101	LSM6	100	72.152	ENSMLEG00000035153	LSM6	99	72.152	Mandrillus_leucophaeus
ENSEEUG00000002101	LSM6	100	67.089	ENSMAMG00000014029	lsm6	99	67.089	Mastacembelus_armatus
ENSEEUG00000002101	LSM6	100	67.089	ENSMZEG00005009146	lsm6	99	67.089	Maylandia_zebra
ENSEEUG00000002101	LSM6	100	72.152	ENSMGAG00000003802	LSM6	99	72.152	Meleagris_gallopavo
ENSEEUG00000002101	LSM6	100	72.152	ENSMAUG00000014938	Lsm6	99	72.152	Mesocricetus_auratus
ENSEEUG00000002101	LSM6	100	72.152	ENSMICG00000042599	LSM6	99	72.152	Microcebus_murinus
ENSEEUG00000002101	LSM6	97	62.338	ENSMICG00000047411	-	91	62.338	Microcebus_murinus
ENSEEUG00000002101	LSM6	100	72.152	ENSMOCG00000020049	Lsm6	99	72.152	Microtus_ochrogaster
ENSEEUG00000002101	LSM6	100	62.025	ENSMMOG00000007379	-	99	62.025	Mola_mola
ENSEEUG00000002101	LSM6	100	67.089	ENSMMOG00000005470	lsm6	99	67.089	Mola_mola
ENSEEUG00000002101	LSM6	100	72.152	ENSMODG00000000526	LSM6	99	72.152	Monodelphis_domestica
ENSEEUG00000002101	LSM6	100	67.089	ENSMALG00000002419	lsm6	99	67.089	Monopterus_albus
ENSEEUG00000002101	LSM6	100	72.152	MGP_CAROLIEiJ_G0031245	Lsm6	99	72.152	Mus_caroli
ENSEEUG00000002101	LSM6	100	72.152	ENSMUSG00000031683	Lsm6	99	72.152	Mus_musculus
ENSEEUG00000002101	LSM6	100	72.152	MGP_PahariEiJ_G0022851	Lsm6	99	72.152	Mus_pahari
ENSEEUG00000002101	LSM6	100	72.152	MGP_SPRETEiJ_G0032365	Lsm6	99	72.152	Mus_spretus
ENSEEUG00000002101	LSM6	99	71.795	ENSMPUG00000006936	LSM6	91	71.795	Mustela_putorius_furo
ENSEEUG00000002101	LSM6	100	72.152	ENSMLUG00000026355	LSM6	99	72.152	Myotis_lucifugus
ENSEEUG00000002101	LSM6	100	72.152	ENSNGAG00000019116	Lsm6	99	72.152	Nannospalax_galili
ENSEEUG00000002101	LSM6	100	67.089	ENSNBRG00000004887	lsm6	99	67.089	Neolamprologus_brichardi
ENSEEUG00000002101	LSM6	100	72.152	ENSNLEG00000005584	LSM6	99	72.152	Nomascus_leucogenys
ENSEEUG00000002101	LSM6	100	70.886	ENSOPRG00000011199	LSM6	99	70.886	Ochotona_princeps
ENSEEUG00000002101	LSM6	100	70.886	ENSODEG00000002307	-	99	70.886	Octodon_degus
ENSEEUG00000002101	LSM6	100	68.354	ENSODEG00000019419	-	99	68.354	Octodon_degus
ENSEEUG00000002101	LSM6	100	69.620	ENSODEG00000020420	-	99	69.620	Octodon_degus
ENSEEUG00000002101	LSM6	96	64.474	ENSODEG00000018684	-	99	64.474	Octodon_degus
ENSEEUG00000002101	LSM6	100	67.089	ENSONIG00000010005	lsm6	99	67.089	Oreochromis_niloticus
ENSEEUG00000002101	LSM6	62	100.000	ENSOANG00000006894	-	63	100.000	Ornithorhynchus_anatinus
ENSEEUG00000002101	LSM6	62	100.000	ENSOANG00000006895	-	63	100.000	Ornithorhynchus_anatinus
ENSEEUG00000002101	LSM6	100	65.823	ENSORLG00000024158	lsm6	99	65.823	Oryzias_latipes
ENSEEUG00000002101	LSM6	100	65.823	ENSORLG00020017383	lsm6	99	65.823	Oryzias_latipes_hni
ENSEEUG00000002101	LSM6	100	65.823	ENSORLG00015016903	lsm6	99	65.823	Oryzias_latipes_hsok
ENSEEUG00000002101	LSM6	100	67.089	ENSOMEG00000000074	lsm6	99	67.089	Oryzias_melastigma
ENSEEUG00000002101	LSM6	100	72.152	ENSOGAG00000026665	-	99	72.152	Otolemur_garnettii
ENSEEUG00000002101	LSM6	100	72.152	ENSOGAG00000033153	-	99	72.152	Otolemur_garnettii
ENSEEUG00000002101	LSM6	99	69.231	ENSOARG00000011641	-	91	69.231	Ovis_aries
ENSEEUG00000002101	LSM6	86	67.647	ENSOARG00000008509	-	87	67.647	Ovis_aries
ENSEEUG00000002101	LSM6	100	72.152	ENSPPAG00000037929	LSM6	99	72.152	Pan_paniscus
ENSEEUG00000002101	LSM6	100	72.152	ENSPPRG00000012806	LSM6	99	72.152	Panthera_pardus
ENSEEUG00000002101	LSM6	100	72.152	ENSPTIG00000019769	LSM6	99	72.152	Panthera_tigris_altaica
ENSEEUG00000002101	LSM6	100	72.152	ENSPTRG00000016488	LSM6	99	72.152	Pan_troglodytes
ENSEEUG00000002101	LSM6	100	72.152	ENSPANG00000006552	LSM6	99	72.152	Papio_anubis
ENSEEUG00000002101	LSM6	100	68.354	ENSPKIG00000016176	lsm6	99	68.354	Paramormyrops_kingsleyae
ENSEEUG00000002101	LSM6	100	72.152	ENSPSIG00000016942	LSM6	99	72.152	Pelodiscus_sinensis
ENSEEUG00000002101	LSM6	100	67.089	ENSPMGG00000018004	lsm6	99	67.089	Periophthalmus_magnuspinnatus
ENSEEUG00000002101	LSM6	100	72.152	ENSPEMG00000012410	Lsm6	99	72.152	Peromyscus_maniculatus_bairdii
ENSEEUG00000002101	LSM6	100	70.886	ENSPMAG00000006949	lsm6	99	70.886	Petromyzon_marinus
ENSEEUG00000002101	LSM6	100	72.152	ENSPCIG00000023469	LSM6	75	72.152	Phascolarctos_cinereus
ENSEEUG00000002101	LSM6	100	67.089	ENSPFOG00000008881	lsm6	99	67.089	Poecilia_formosa
ENSEEUG00000002101	LSM6	100	67.089	ENSPLAG00000003202	lsm6	99	67.089	Poecilia_latipinna
ENSEEUG00000002101	LSM6	100	67.089	ENSPMEG00000004000	lsm6	99	67.089	Poecilia_mexicana
ENSEEUG00000002101	LSM6	100	67.089	ENSPREG00000023235	lsm6	99	67.089	Poecilia_reticulata
ENSEEUG00000002101	LSM6	100	72.152	ENSPPYG00000015105	LSM6	99	72.152	Pongo_abelii
ENSEEUG00000002101	LSM6	100	72.152	ENSPCOG00000013899	LSM6	99	72.152	Propithecus_coquereli
ENSEEUG00000002101	LSM6	100	67.089	ENSPNYG00000012614	lsm6	99	67.089	Pundamilia_nyererei
ENSEEUG00000002101	LSM6	100	68.354	ENSPNAG00000018779	lsm6	99	68.354	Pygocentrus_nattereri
ENSEEUG00000002101	LSM6	100	72.152	ENSRNOG00000049370	LOC100360750	99	72.152	Rattus_norvegicus
ENSEEUG00000002101	LSM6	100	72.152	ENSRNOG00000030374	Lsm6	99	72.152	Rattus_norvegicus
ENSEEUG00000002101	LSM6	100	72.152	ENSRBIG00000027878	LSM6	99	72.152	Rhinopithecus_bieti
ENSEEUG00000002101	LSM6	100	72.152	ENSRROG00000024868	LSM6	99	72.152	Rhinopithecus_roxellana
ENSEEUG00000002101	LSM6	100	62.821	ENSSBOG00000028103	-	99	62.821	Saimiri_boliviensis_boliviensis
ENSEEUG00000002101	LSM6	100	72.152	ENSSBOG00000021229	-	99	72.152	Saimiri_boliviensis_boliviensis
ENSEEUG00000002101	LSM6	100	68.354	ENSSFOG00015016480	lsm6	99	68.354	Scleropages_formosus
ENSEEUG00000002101	LSM6	100	67.089	ENSSMAG00000004550	lsm6	99	67.089	Scophthalmus_maximus
ENSEEUG00000002101	LSM6	100	67.089	ENSSLDG00000020533	lsm6	82	67.089	Seriola_lalandi_dorsalis
ENSEEUG00000002101	LSM6	86	64.706	ENSSLDG00000004136	-	59	64.706	Seriola_lalandi_dorsalis
ENSEEUG00000002101	LSM6	62	100.000	ENSSARG00000000689	LSM6	100	100.000	Sorex_araneus
ENSEEUG00000002101	LSM6	100	72.152	ENSSPUG00000008657	LSM6	99	72.152	Sphenodon_punctatus
ENSEEUG00000002101	LSM6	100	67.089	ENSSPAG00000003246	lsm6	99	67.089	Stegastes_partitus
ENSEEUG00000002101	LSM6	100	72.152	ENSSSCG00000035973	LSM6	99	72.152	Sus_scrofa
ENSEEUG00000002101	LSM6	100	72.152	ENSTGUG00000002663	LSM6	99	72.152	Taeniopygia_guttata
ENSEEUG00000002101	LSM6	100	67.089	ENSTRUG00000023398	lsm6	99	67.089	Takifugu_rubripes
ENSEEUG00000002101	LSM6	100	67.089	ENSTNIG00000017725	lsm6	99	67.089	Tetraodon_nigroviridis
ENSEEUG00000002101	LSM6	100	72.152	ENSTTRG00000004609	LSM6	99	72.152	Tursiops_truncatus
ENSEEUG00000002101	LSM6	97	62.338	ENSUAMG00000014213	LSM6	63	62.338	Ursus_americanus
ENSEEUG00000002101	LSM6	97	62.338	ENSUMAG00000015727	LSM6	63	62.338	Ursus_maritimus
ENSEEUG00000002101	LSM6	100	72.152	ENSVPAG00000006922	LSM6	99	72.152	Vicugna_pacos
ENSEEUG00000002101	LSM6	100	72.152	ENSVVUG00000009254	LSM6	68	72.152	Vulpes_vulpes
ENSEEUG00000002101	LSM6	100	72.152	ENSXETG00000023683	lsm6	99	72.152	Xenopus_tropicalis
ENSEEUG00000002101	LSM6	100	67.089	ENSXMAG00000009606	lsm6	99	67.089	Xiphophorus_maculatus