EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000003159 (Gene tree)
Gene ID: -
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 8447 bases
Position: chrGeneScaffold_1301:5778-14224
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000002894	PRP21_like_P	PF12230.8	1.3e-49	1	1
ENSEEUP00000002894	Surp	PF01805.20	4e-37	1	2
ENSEEUP00000002894	Surp	PF01805.20	4e-37	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000003160	SF3A1-201	2103	-	ENSEEUP00000002894	701 (aa)	-	UPI0000F616D5

Gene Model

Click here to download ENSEEUG00000003159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000003159's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000003159	SF3A1	82	95.082	ENSG00000099995	SF3A1	90	81.949	Homo_sapiens
ENSEEUG00000003159	SF3A1	83	91.803	ENSAPOG00000020465	sf3a1	74	91.803	Acanthochromis_polyacanthus
ENSEEUG00000003159	SF3A1	82	95.082	ENSAMEG00000007737	SF3A1	73	95.082	Ailuropoda_melanoleuca
ENSEEUG00000003159	SF3A1	83	90.164	ENSACIG00000020672	sf3a1	74	90.164	Amphilophus_citrinellus
ENSEEUG00000003159	SF3A1	83	91.803	ENSAOCG00000003060	sf3a1	74	91.803	Amphiprion_ocellaris
ENSEEUG00000003159	SF3A1	83	91.803	ENSAPEG00000010735	sf3a1	74	91.803	Amphiprion_percula
ENSEEUG00000003159	SF3A1	82	91.803	ENSATEG00000021201	sf3a1	73	91.803	Anabas_testudineus
ENSEEUG00000003159	SF3A1	79	93.443	ENSAPLG00000009057	SF3A1	75	93.443	Anas_platyrhynchos
ENSEEUG00000003159	SF3A1	82	91.803	ENSACAG00000009415	SF3A1	74	91.803	Anolis_carolinensis
ENSEEUG00000003159	SF3A1	82	95.082	ENSANAG00000032045	SF3A1	73	95.082	Aotus_nancymaae
ENSEEUG00000003159	SF3A1	81	88.525	ENSACLG00000012622	sf3a1	74	88.525	Astatotilapia_calliptera
ENSEEUG00000003159	SF3A1	82	91.803	ENSAMXG00000005382	sf3a1	74	91.803	Astyanax_mexicanus
ENSEEUG00000003159	SF3A1	82	95.082	ENSBTAG00000003390	SF3A1	73	95.082	Bos_taurus
ENSEEUG00000003159	SF3A1	73	41.892	WBGene00004188	prp-21	67	43.326	Caenorhabditis_elegans
ENSEEUG00000003159	SF3A1	82	95.082	ENSCJAG00000010370	SF3A1	73	95.082	Callithrix_jacchus
ENSEEUG00000003159	SF3A1	82	95.082	ENSCAFG00000012559	SF3A1	73	95.082	Canis_familiaris
ENSEEUG00000003159	SF3A1	82	95.082	ENSCAFG00020000838	SF3A1	73	95.082	Canis_lupus_dingo
ENSEEUG00000003159	SF3A1	82	95.082	ENSCHIG00000018642	SF3A1	73	95.082	Capra_hircus
ENSEEUG00000003159	SF3A1	82	95.082	ENSTSYG00000004739	SF3A1	73	95.082	Carlito_syrichta
ENSEEUG00000003159	SF3A1	80	77.282	ENSCAPG00000015414	SF3A1	72	77.735	Cavia_aperea
ENSEEUG00000003159	SF3A1	82	95.082	ENSCPOG00000014589	SF3A1	73	95.082	Cavia_porcellus
ENSEEUG00000003159	SF3A1	82	95.082	ENSCCAG00000032006	SF3A1	73	95.082	Cebus_capucinus
ENSEEUG00000003159	SF3A1	82	95.082	ENSCATG00000029241	SF3A1	73	95.082	Cercocebus_atys
ENSEEUG00000003159	SF3A1	82	95.082	ENSCLAG00000006508	SF3A1	73	95.082	Chinchilla_lanigera
ENSEEUG00000003159	SF3A1	82	95.082	ENSCSAG00000009470	SF3A1	73	95.082	Chlorocebus_sabaeus
ENSEEUG00000003159	SF3A1	56	98.095	ENSCHOG00000005201	SF3A1	56	98.095	Choloepus_hoffmanni
ENSEEUG00000003159	SF3A1	83	93.443	ENSCPBG00000007595	SF3A1	73	93.443	Chrysemys_picta_bellii
ENSEEUG00000003159	SF3A1	78	68.852	ENSCING00000008526	-	70	68.852	Ciona_intestinalis
ENSEEUG00000003159	SF3A1	83	68.852	ENSCSAVG00000005608	-	79	68.852	Ciona_savignyi
ENSEEUG00000003159	SF3A1	82	95.082	ENSCANG00000033564	SF3A1	73	95.082	Colobus_angolensis_palliatus
ENSEEUG00000003159	SF3A1	82	93.443	ENSCGRG00001008933	Sf3a1	73	93.449	Cricetulus_griseus_chok1gshd
ENSEEUG00000003159	SF3A1	82	93.443	ENSCGRG00000006127	Sf3a1	73	93.449	Cricetulus_griseus_crigri
ENSEEUG00000003159	SF3A1	82	93.443	ENSCSEG00000010792	sf3a1	74	93.443	Cynoglossus_semilaevis
ENSEEUG00000003159	SF3A1	83	88.525	ENSCVAG00000004560	sf3a1	74	88.525	Cyprinodon_variegatus
ENSEEUG00000003159	SF3A1	83	93.443	ENSDARG00000041887	sf3a1	73	93.443	Danio_rerio
ENSEEUG00000003159	SF3A1	83	95.082	ENSDNOG00000010629	SF3A1	73	95.082	Dasypus_novemcinctus
ENSEEUG00000003159	SF3A1	82	95.082	ENSDORG00000005613	Sf3a1	73	95.082	Dipodomys_ordii
ENSEEUG00000003159	SF3A1	78	57.834	FBgn0266917	Sf3a1	72	56.505	Drosophila_melanogaster
ENSEEUG00000003159	SF3A1	72	92.717	ENSETEG00000017194	SF3A1	74	92.486	Echinops_telfairi
ENSEEUG00000003159	SF3A1	78	86.885	ENSEBUG00000001285	sf3a1	69	86.885	Eptatretus_burgeri
ENSEEUG00000003159	SF3A1	82	95.082	ENSEASG00005010254	SF3A1	73	95.082	Equus_asinus_asinus
ENSEEUG00000003159	SF3A1	82	95.082	ENSECAG00000023962	SF3A1	73	95.082	Equus_caballus
ENSEEUG00000003159	SF3A1	83	90.164	ENSELUG00000022578	sf3a1	76	89.655	Esox_lucius
ENSEEUG00000003159	SF3A1	82	95.082	ENSFCAG00000011932	SF3A1	73	95.082	Felis_catus
ENSEEUG00000003159	SF3A1	83	93.443	ENSFALG00000006944	SF3A1	78	92.085	Ficedula_albicollis
ENSEEUG00000003159	SF3A1	82	95.082	ENSFDAG00000009560	SF3A1	73	95.082	Fukomys_damarensis
ENSEEUG00000003159	SF3A1	83	91.803	ENSFHEG00000010866	sf3a1	74	91.803	Fundulus_heteroclitus
ENSEEUG00000003159	SF3A1	83	91.803	ENSGMOG00000016024	sf3a1	77	91.803	Gadus_morhua
ENSEEUG00000003159	SF3A1	79	93.443	ENSGALG00000007937	SF3A1	73	93.443	Gallus_gallus
ENSEEUG00000003159	SF3A1	83	90.164	ENSGAFG00000009111	sf3a1	74	90.164	Gambusia_affinis
ENSEEUG00000003159	SF3A1	82	90.164	ENSGACG00000011893	sf3a1	73	90.164	Gasterosteus_aculeatus
ENSEEUG00000003159	SF3A1	78	93.103	ENSGAGG00000000762	SF3A1	76	93.103	Gopherus_agassizii
ENSEEUG00000003159	SF3A1	82	95.082	ENSGGOG00000012631	SF3A1	73	95.082	Gorilla_gorilla
ENSEEUG00000003159	SF3A1	83	88.525	ENSHBUG00000015795	sf3a1	74	88.525	Haplochromis_burtoni
ENSEEUG00000003159	SF3A1	82	95.082	ENSHGLG00000007907	SF3A1	73	95.082	Heterocephalus_glaber_female
ENSEEUG00000003159	SF3A1	82	95.082	ENSHGLG00100013799	SF3A1	73	95.082	Heterocephalus_glaber_male
ENSEEUG00000003159	SF3A1	83	91.803	ENSHCOG00000015423	sf3a1	74	91.803	Hippocampus_comes
ENSEEUG00000003159	SF3A1	82	93.443	ENSIPUG00000002470	sf3a1	75	93.443	Ictalurus_punctatus
ENSEEUG00000003159	SF3A1	82	95.082	ENSSTOG00000013892	SF3A1	73	95.082	Ictidomys_tridecemlineatus
ENSEEUG00000003159	SF3A1	82	95.082	ENSJJAG00000022566	Sf3a1	73	95.082	Jaculus_jaculus
ENSEEUG00000003159	SF3A1	81	88.525	ENSKMAG00000002400	sf3a1	74	88.525	Kryptolebias_marmoratus
ENSEEUG00000003159	SF3A1	83	91.803	ENSLBEG00000022974	sf3a1	74	91.803	Labrus_bergylta
ENSEEUG00000003159	SF3A1	82	93.443	ENSLACG00000003565	SF3A1	73	93.443	Latimeria_chalumnae
ENSEEUG00000003159	SF3A1	80	95.082	ENSLOCG00000008251	sf3a1	74	95.082	Lepisosteus_oculatus
ENSEEUG00000003159	SF3A1	83	95.082	ENSLAFG00000000448	SF3A1	73	95.082	Loxodonta_africana
ENSEEUG00000003159	SF3A1	80	78.261	ENSLAFG00000026032	-	70	78.261	Loxodonta_africana
ENSEEUG00000003159	SF3A1	82	95.082	ENSMFAG00000031979	SF3A1	73	95.082	Macaca_fascicularis
ENSEEUG00000003159	SF3A1	82	95.082	ENSMMUG00000005547	SF3A1	90	81.588	Macaca_mulatta
ENSEEUG00000003159	SF3A1	82	95.082	ENSMNEG00000037229	SF3A1	73	95.082	Macaca_nemestrina
ENSEEUG00000003159	SF3A1	82	95.082	ENSMLEG00000041908	SF3A1	73	95.082	Mandrillus_leucophaeus
ENSEEUG00000003159	SF3A1	83	91.803	ENSMAMG00000006460	sf3a1	73	91.803	Mastacembelus_armatus
ENSEEUG00000003159	SF3A1	81	88.525	ENSMZEG00005009633	sf3a1	74	88.525	Maylandia_zebra
ENSEEUG00000003159	SF3A1	79	93.443	ENSMGAG00000001330	SF3A1	75	93.443	Meleagris_gallopavo
ENSEEUG00000003159	SF3A1	83	93.443	ENSMAUG00000020317	Sf3a1	74	93.443	Mesocricetus_auratus
ENSEEUG00000003159	SF3A1	82	95.082	ENSMICG00000010038	SF3A1	73	95.082	Microcebus_murinus
ENSEEUG00000003159	SF3A1	82	93.762	ENSMOCG00000008438	Sf3a1	73	93.834	Microtus_ochrogaster
ENSEEUG00000003159	SF3A1	83	91.803	ENSMMOG00000015588	sf3a1	73	91.803	Mola_mola
ENSEEUG00000003159	SF3A1	83	92.486	ENSMODG00000009270	SF3A1	73	92.486	Monodelphis_domestica
ENSEEUG00000003159	SF3A1	82	91.803	ENSMALG00000000148	sf3a1	78	91.803	Monopterus_albus
ENSEEUG00000003159	SF3A1	82	93.443	MGP_CAROLIEiJ_G0016029	Sf3a1	73	93.443	Mus_caroli
ENSEEUG00000003159	SF3A1	82	93.443	ENSMUSG00000002129	Sf3a1	73	93.443	Mus_musculus
ENSEEUG00000003159	SF3A1	83	93.443	MGP_PahariEiJ_G0016862	Sf3a1	73	93.443	Mus_pahari
ENSEEUG00000003159	SF3A1	82	93.443	MGP_SPRETEiJ_G0016870	Sf3a1	73	93.443	Mus_spretus
ENSEEUG00000003159	SF3A1	82	95.082	ENSMPUG00000013144	SF3A1	73	95.082	Mustela_putorius_furo
ENSEEUG00000003159	SF3A1	82	95.082	ENSMLUG00000002139	SF3A1	73	95.082	Myotis_lucifugus
ENSEEUG00000003159	SF3A1	82	95.082	ENSNGAG00000016977	Sf3a1	73	95.082	Nannospalax_galili
ENSEEUG00000003159	SF3A1	83	88.525	ENSNBRG00000016642	sf3a1	74	88.525	Neolamprologus_brichardi
ENSEEUG00000003159	SF3A1	82	95.082	ENSNLEG00000003686	SF3A1	73	95.082	Nomascus_leucogenys
ENSEEUG00000003159	SF3A1	82	91.379	ENSMEUG00000008741	SF3A1	76	91.522	Notamacropus_eugenii
ENSEEUG00000003159	SF3A1	82	95.082	ENSOPRG00000016636	SF3A1	73	95.082	Ochotona_princeps
ENSEEUG00000003159	SF3A1	82	95.082	ENSODEG00000002571	SF3A1	73	95.082	Octodon_degus
ENSEEUG00000003159	SF3A1	83	88.525	ENSONIG00000010848	sf3a1	74	88.525	Oreochromis_niloticus
ENSEEUG00000003159	SF3A1	82	95.082	ENSOCUG00000007633	SF3A1	73	95.082	Oryctolagus_cuniculus
ENSEEUG00000003159	SF3A1	80	89.655	ENSORLG00000013050	sf3a1	76	89.655	Oryzias_latipes
ENSEEUG00000003159	SF3A1	82	89.655	ENSORLG00020003236	sf3a1	73	89.655	Oryzias_latipes_hni
ENSEEUG00000003159	SF3A1	81	90.164	ENSORLG00015017411	sf3a1	74	90.164	Oryzias_latipes_hsok
ENSEEUG00000003159	SF3A1	83	88.525	ENSOMEG00000013362	sf3a1	74	88.525	Oryzias_melastigma
ENSEEUG00000003159	SF3A1	82	95.082	ENSOGAG00000012931	SF3A1	73	95.082	Otolemur_garnettii
ENSEEUG00000003159	SF3A1	82	95.082	ENSOARG00000006849	SF3A1	73	95.082	Ovis_aries
ENSEEUG00000003159	SF3A1	82	95.082	ENSPPAG00000041790	SF3A1	73	95.082	Pan_paniscus
ENSEEUG00000003159	SF3A1	82	95.082	ENSPPRG00000004391	SF3A1	73	95.082	Panthera_pardus
ENSEEUG00000003159	SF3A1	82	95.082	ENSPTIG00000000844	SF3A1	75	95.082	Panthera_tigris_altaica
ENSEEUG00000003159	SF3A1	82	95.082	ENSPTRG00000014240	SF3A1	73	95.082	Pan_troglodytes
ENSEEUG00000003159	SF3A1	82	95.082	ENSPANG00000020772	SF3A1	73	95.082	Papio_anubis
ENSEEUG00000003159	SF3A1	83	95.082	ENSPSIG00000012803	SF3A1	89	95.082	Pelodiscus_sinensis
ENSEEUG00000003159	SF3A1	81	90.164	ENSPMGG00000023096	sf3a1	76	90.164	Periophthalmus_magnuspinnatus
ENSEEUG00000003159	SF3A1	82	93.762	ENSPEMG00000009494	Sf3a1	73	93.834	Peromyscus_maniculatus_bairdii
ENSEEUG00000003159	SF3A1	69	75.051	ENSPMAG00000007139	-	83	75.407	Petromyzon_marinus
ENSEEUG00000003159	SF3A1	83	92.486	ENSPCIG00000022692	SF3A1	73	92.486	Phascolarctos_cinereus
ENSEEUG00000003159	SF3A1	83	91.803	ENSPFOG00000016768	sf3a1	74	91.803	Poecilia_formosa
ENSEEUG00000003159	SF3A1	83	91.803	ENSPLAG00000017268	sf3a1	74	91.803	Poecilia_latipinna
ENSEEUG00000003159	SF3A1	73	91.803	ENSPMEG00000019811	sf3a1	76	91.803	Poecilia_mexicana
ENSEEUG00000003159	SF3A1	83	91.803	ENSPREG00000010347	sf3a1	74	91.803	Poecilia_reticulata
ENSEEUG00000003159	SF3A1	82	95.082	ENSPPYG00000011707	SF3A1	73	95.082	Pongo_abelii
ENSEEUG00000003159	SF3A1	82	95.082	ENSPCOG00000026630	SF3A1	73	95.082	Propithecus_coquereli
ENSEEUG00000003159	SF3A1	82	95.082	ENSPVAG00000017719	SF3A1	73	95.082	Pteropus_vampyrus
ENSEEUG00000003159	SF3A1	83	88.525	ENSPNYG00000018706	sf3a1	74	88.525	Pundamilia_nyererei
ENSEEUG00000003159	SF3A1	82	93.443	ENSPNAG00000003721	sf3a1	74	93.443	Pygocentrus_nattereri
ENSEEUG00000003159	SF3A1	82	93.443	ENSRNOG00000005218	Sf3a1	73	93.443	Rattus_norvegicus
ENSEEUG00000003159	SF3A1	82	95.082	ENSRBIG00000032167	SF3A1	73	95.082	Rhinopithecus_bieti
ENSEEUG00000003159	SF3A1	82	95.082	ENSRROG00000044908	SF3A1	73	95.082	Rhinopithecus_roxellana
ENSEEUG00000003159	SF3A1	82	95.082	ENSSBOG00000021960	SF3A1	76	95.082	Saimiri_boliviensis_boliviensis
ENSEEUG00000003159	SF3A1	83	91.803	ENSSHAG00000003666	SF3A1	73	91.803	Sarcophilus_harrisii
ENSEEUG00000003159	SF3A1	82	93.443	ENSSFOG00015004579	sf3a1	74	93.443	Scleropages_formosus
ENSEEUG00000003159	SF3A1	83	90.164	ENSSMAG00000004275	sf3a1	74	90.164	Scophthalmus_maximus
ENSEEUG00000003159	SF3A1	83	91.803	ENSSDUG00000022219	sf3a1	74	91.803	Seriola_dumerili
ENSEEUG00000003159	SF3A1	83	91.803	ENSSLDG00000012642	sf3a1	74	91.803	Seriola_lalandi_dorsalis
ENSEEUG00000003159	SF3A1	83	95.082	ENSSARG00000005960	SF3A1	75	95.082	Sorex_araneus
ENSEEUG00000003159	SF3A1	79	93.443	ENSSPUG00000018863	SF3A1	72	93.443	Sphenodon_punctatus
ENSEEUG00000003159	SF3A1	83	91.803	ENSSPAG00000011856	sf3a1	74	91.803	Stegastes_partitus
ENSEEUG00000003159	SF3A1	82	95.082	ENSSSCG00000010002	SF3A1	75	93.449	Sus_scrofa
ENSEEUG00000003159	SF3A1	83	91.908	ENSTGUG00000010547	SF3A1	75	91.908	Taeniopygia_guttata
ENSEEUG00000003159	SF3A1	83	91.803	ENSTRUG00000006118	sf3a1	74	91.803	Takifugu_rubripes
ENSEEUG00000003159	SF3A1	78	100.000	ENSTBEG00000012771	SF3A1	69	100.000	Tupaia_belangeri
ENSEEUG00000003159	SF3A1	82	95.082	ENSTTRG00000001535	SF3A1	73	95.082	Tursiops_truncatus
ENSEEUG00000003159	SF3A1	82	95.082	ENSUAMG00000006750	SF3A1	73	95.082	Ursus_americanus
ENSEEUG00000003159	SF3A1	83	95.082	ENSUMAG00000016665	SF3A1	77	95.082	Ursus_maritimus
ENSEEUG00000003159	SF3A1	82	95.082	ENSVVUG00000003075	SF3A1	73	95.082	Vulpes_vulpes
ENSEEUG00000003159	SF3A1	82	88.525	ENSXETG00000016144	sf3a1	72	88.525	Xenopus_tropicalis
ENSEEUG00000003159	SF3A1	82	88.525	ENSXCOG00000015653	sf3a1	74	88.525	Xiphophorus_couchianus
ENSEEUG00000003159	SF3A1	82	88.525	ENSXMAG00000002753	sf3a1	74	88.525	Xiphophorus_maculatus