EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000003493 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 146770 bases
Position: chrGeneScaffold_667:5440-152209
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000003215	EST1	PF10374.9	5.8e-09	1	1
ENSEEUP00000003215	EST1_DNA_bind	PF10373.9	1.1e-34	1	1
ENSEEUP00000003215	PIN_4	PF13638.6	2.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000003528	SMG6-201	4215	-	ENSEEUP00000003215	1404 (aa)	-	UPI0000F63E05

Gene Model

Click here to download ENSEEUG00000003493's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000003493's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000003493	SMG6	100	81.536	ENSG00000070366	SMG6	91	96.842	Homo_sapiens
ENSEEUG00000003493	SMG6	80	57.727	ENSAPOG00000019448	smg6	74	47.170	Acanthochromis_polyacanthus
ENSEEUG00000003493	SMG6	100	83.310	ENSAMEG00000007632	SMG6	100	83.310	Ailuropoda_melanoleuca
ENSEEUG00000003493	SMG6	72	51.244	ENSACIG00000012997	smg6	71	51.289	Amphilophus_citrinellus
ENSEEUG00000003493	SMG6	82	57.273	ENSAOCG00000002630	smg6	74	47.142	Amphiprion_ocellaris
ENSEEUG00000003493	SMG6	82	57.500	ENSAPEG00000019101	smg6	74	47.298	Amphiprion_percula
ENSEEUG00000003493	SMG6	84	47.352	ENSATEG00000006483	smg6	73	46.885	Anabas_testudineus
ENSEEUG00000003493	SMG6	87	48.336	ENSACAG00000011783	SMG6	99	48.926	Anolis_carolinensis
ENSEEUG00000003493	SMG6	100	82.311	ENSANAG00000035760	SMG6	96	87.031	Aotus_nancymaae
ENSEEUG00000003493	SMG6	68	57.895	ENSACLG00000005288	smg6	80	47.004	Astatotilapia_calliptera
ENSEEUG00000003493	SMG6	69	53.125	ENSAMXG00000017326	smg6	98	43.693	Astyanax_mexicanus
ENSEEUG00000003493	SMG6	100	83.203	ENSBTAG00000000267	SMG6	100	83.203	Bos_taurus
ENSEEUG00000003493	SMG6	100	81.735	ENSCJAG00000001820	SMG6	100	81.735	Callithrix_jacchus
ENSEEUG00000003493	SMG6	100	83.227	ENSCAFG00000019260	SMG6	100	83.227	Canis_familiaris
ENSEEUG00000003493	SMG6	100	83.227	ENSCAFG00020009770	SMG6	100	83.227	Canis_lupus_dingo
ENSEEUG00000003493	SMG6	100	82.636	ENSCHIG00000021998	SMG6	100	82.636	Capra_hircus
ENSEEUG00000003493	SMG6	100	81.959	ENSTSYG00000003406	SMG6	99	85.490	Carlito_syrichta
ENSEEUG00000003493	SMG6	86	87.037	ENSCAPG00000016197	SMG6	94	87.037	Cavia_aperea
ENSEEUG00000003493	SMG6	100	79.789	ENSCPOG00000014878	SMG6	100	79.789	Cavia_porcellus
ENSEEUG00000003493	SMG6	100	82.171	ENSCCAG00000035801	SMG6	100	82.171	Cebus_capucinus
ENSEEUG00000003493	SMG6	100	81.748	ENSCATG00000031956	SMG6	100	81.748	Cercocebus_atys
ENSEEUG00000003493	SMG6	100	80.973	ENSCLAG00000006748	SMG6	100	80.973	Chinchilla_lanigera
ENSEEUG00000003493	SMG6	100	82.100	ENSCSAG00000013800	SMG6	100	82.100	Chlorocebus_sabaeus
ENSEEUG00000003493	SMG6	51	97.015	ENSCHOG00000005024	-	66	97.015	Choloepus_hoffmanni
ENSEEUG00000003493	SMG6	100	62.500	ENSCPBG00000020369	SMG6	100	62.935	Chrysemys_picta_bellii
ENSEEUG00000003493	SMG6	98	81.831	ENSCANG00000031764	SMG6	99	84.902	Colobus_angolensis_palliatus
ENSEEUG00000003493	SMG6	50	83.520	ENSCGRG00001019595	Smg6	94	83.520	Cricetulus_griseus_chok1gshd
ENSEEUG00000003493	SMG6	87	93.182	ENSCGRG00000007782	Smg6	96	83.480	Cricetulus_griseus_crigri
ENSEEUG00000003493	SMG6	85	46.557	ENSCSEG00000012757	smg6	79	46.635	Cynoglossus_semilaevis
ENSEEUG00000003493	SMG6	70	57.466	ENSCVAG00000012789	smg6	74	46.232	Cyprinodon_variegatus
ENSEEUG00000003493	SMG6	95	47.638	ENSDARG00000100481	smg6	87	48.670	Danio_rerio
ENSEEUG00000003493	SMG6	100	81.889	ENSDNOG00000048283	SMG6	100	81.889	Dasypus_novemcinctus
ENSEEUG00000003493	SMG6	96	87.812	ENSDORG00000016614	Smg6	100	87.812	Dipodomys_ordii
ENSEEUG00000003493	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSEEUG00000003493	SMG6	64	55.904	ENSEBUG00000005059	smg6	64	55.981	Eptatretus_burgeri
ENSEEUG00000003493	SMG6	99	83.912	ENSEASG00005009318	SMG6	99	83.912	Equus_asinus_asinus
ENSEEUG00000003493	SMG6	99	83.770	ENSECAG00000006519	SMG6	99	83.770	Equus_caballus
ENSEEUG00000003493	SMG6	72	51.437	ENSELUG00000005934	smg6	64	57.293	Esox_lucius
ENSEEUG00000003493	SMG6	100	84.218	ENSFCAG00000028817	SMG6	100	84.218	Felis_catus
ENSEEUG00000003493	SMG6	98	62.767	ENSFALG00000006538	SMG6	99	62.625	Ficedula_albicollis
ENSEEUG00000003493	SMG6	100	81.312	ENSFDAG00000015106	SMG6	100	81.312	Fukomys_damarensis
ENSEEUG00000003493	SMG6	80	56.591	ENSFHEG00000013282	smg6	75	45.866	Fundulus_heteroclitus
ENSEEUG00000003493	SMG6	100	61.765	ENSGALG00000003108	SMG6	98	62.258	Gallus_gallus
ENSEEUG00000003493	SMG6	84	46.003	ENSGAFG00000000379	smg6	74	46.280	Gambusia_affinis
ENSEEUG00000003493	SMG6	87	60.333	ENSGACG00000020521	smg6	99	45.874	Gasterosteus_aculeatus
ENSEEUG00000003493	SMG6	98	62.287	ENSGAGG00000025617	SMG6	99	62.945	Gopherus_agassizii
ENSEEUG00000003493	SMG6	100	82.382	ENSGGOG00000017156	SMG6	100	82.382	Gorilla_gorilla
ENSEEUG00000003493	SMG6	82	57.895	ENSHBUG00000021311	smg6	74	47.082	Haplochromis_burtoni
ENSEEUG00000003493	SMG6	100	80.788	ENSHGLG00000012882	SMG6	100	80.788	Heterocephalus_glaber_female
ENSEEUG00000003493	SMG6	100	80.859	ENSHGLG00100017815	SMG6	100	80.859	Heterocephalus_glaber_male
ENSEEUG00000003493	SMG6	72	49.475	ENSHCOG00000008761	smg6	83	49.190	Hippocampus_comes
ENSEEUG00000003493	SMG6	84	46.619	ENSIPUG00000012493	smg6	75	46.677	Ictalurus_punctatus
ENSEEUG00000003493	SMG6	100	82.171	ENSSTOG00000028127	SMG6	100	82.171	Ictidomys_tridecemlineatus
ENSEEUG00000003493	SMG6	79	75.424	ENSJJAG00000015367	Smg6	95	73.872	Jaculus_jaculus
ENSEEUG00000003493	SMG6	74	50.133	ENSKMAG00000000279	smg6	77	45.721	Kryptolebias_marmoratus
ENSEEUG00000003493	SMG6	85	46.172	ENSLBEG00000002184	smg6	75	46.037	Labrus_bergylta
ENSEEUG00000003493	SMG6	52	100.000	ENSLACG00000000806	-	92	100.000	Latimeria_chalumnae
ENSEEUG00000003493	SMG6	72	56.042	ENSLOCG00000006448	smg6	99	47.642	Lepisosteus_oculatus
ENSEEUG00000003493	SMG6	100	81.677	ENSLAFG00000001261	SMG6	100	81.677	Loxodonta_africana
ENSEEUG00000003493	SMG6	100	82.100	ENSMFAG00000003394	SMG6	100	82.100	Macaca_fascicularis
ENSEEUG00000003493	SMG6	100	82.030	ENSMMUG00000023161	SMG6	100	82.030	Macaca_mulatta
ENSEEUG00000003493	SMG6	95	85.056	ENSMNEG00000044592	SMG6	95	85.056	Macaca_nemestrina
ENSEEUG00000003493	SMG6	93	85.338	ENSMLEG00000029353	SMG6	99	85.338	Mandrillus_leucophaeus
ENSEEUG00000003493	SMG6	84	47.634	ENSMAMG00000020119	smg6	79	47.266	Mastacembelus_armatus
ENSEEUG00000003493	SMG6	68	57.895	ENSMZEG00005024736	smg6	74	47.229	Maylandia_zebra
ENSEEUG00000003493	SMG6	72	54.589	ENSMGAG00000005401	-	98	54.493	Meleagris_gallopavo
ENSEEUG00000003493	SMG6	100	83.298	ENSMICG00000012913	SMG6	100	83.298	Microcebus_murinus
ENSEEUG00000003493	SMG6	83	54.381	ENSMMOG00000010883	smg6	76	55.401	Mola_mola
ENSEEUG00000003493	SMG6	100	75.316	ENSMODG00000010622	SMG6	100	75.316	Monodelphis_domestica
ENSEEUG00000003493	SMG6	80	57.143	ENSMALG00000001106	smg6	73	47.160	Monopterus_albus
ENSEEUG00000003493	SMG6	100	80.550	MGP_CAROLIEiJ_G0016729	Smg6	100	80.550	Mus_caroli
ENSEEUG00000003493	SMG6	100	80.550	ENSMUSG00000038290	Smg6	100	80.550	Mus_musculus
ENSEEUG00000003493	SMG6	100	80.324	MGP_PahariEiJ_G0017866	Smg6	100	80.324	Mus_pahari
ENSEEUG00000003493	SMG6	100	80.550	MGP_SPRETEiJ_G0017572	Smg6	100	80.550	Mus_spretus
ENSEEUG00000003493	SMG6	100	83.652	ENSMPUG00000013046	SMG6	100	83.652	Mustela_putorius_furo
ENSEEUG00000003493	SMG6	100	83.723	ENSMLUG00000005739	SMG6	100	83.723	Myotis_lucifugus
ENSEEUG00000003493	SMG6	98	79.856	ENSNGAG00000007287	Smg6	99	79.856	Nannospalax_galili
ENSEEUG00000003493	SMG6	77	59.777	ENSNBRG00000009511	smg6	76	53.481	Neolamprologus_brichardi
ENSEEUG00000003493	SMG6	99	81.792	ENSNLEG00000017171	SMG6	99	85.294	Nomascus_leucogenys
ENSEEUG00000003493	SMG6	98	73.165	ENSMEUG00000015804	SMG6	99	73.165	Notamacropus_eugenii
ENSEEUG00000003493	SMG6	55	88.688	ENSOPRG00000000579	SMG6	74	96.316	Ochotona_princeps
ENSEEUG00000003493	SMG6	96	85.647	ENSODEG00000008038	SMG6	100	85.647	Octodon_degus
ENSEEUG00000003493	SMG6	96	58.352	ENSONIG00000005594	smg6	100	44.048	Oreochromis_niloticus
ENSEEUG00000003493	SMG6	100	81.972	ENSOCUG00000013018	SMG6	100	82.113	Oryctolagus_cuniculus
ENSEEUG00000003493	SMG6	91	56.236	ENSORLG00000003317	smg6	86	46.656	Oryzias_latipes
ENSEEUG00000003493	SMG6	91	56.621	ENSORLG00020015343	smg6	86	46.488	Oryzias_latipes_hni
ENSEEUG00000003493	SMG6	96	55.782	ENSORLG00015020454	smg6	99	46.535	Oryzias_latipes_hsok
ENSEEUG00000003493	SMG6	84	45.899	ENSOMEG00000010838	smg6	75	46.282	Oryzias_melastigma
ENSEEUG00000003493	SMG6	100	82.324	ENSOGAG00000004483	SMG6	100	82.324	Otolemur_garnettii
ENSEEUG00000003493	SMG6	100	81.201	ENSOARG00000015076	SMG6	100	82.464	Ovis_aries
ENSEEUG00000003493	SMG6	100	82.311	ENSPPAG00000043296	SMG6	100	82.311	Pan_paniscus
ENSEEUG00000003493	SMG6	100	84.360	ENSPPRG00000014581	SMG6	100	84.360	Panthera_pardus
ENSEEUG00000003493	SMG6	98	84.382	ENSPTIG00000008925	SMG6	99	86.667	Panthera_tigris_altaica
ENSEEUG00000003493	SMG6	100	82.311	ENSPTRG00000008544	SMG6	99	85.294	Pan_troglodytes
ENSEEUG00000003493	SMG6	100	81.889	ENSPANG00000024588	SMG6	100	81.889	Papio_anubis
ENSEEUG00000003493	SMG6	89	60.784	ENSPSIG00000006660	SMG6	96	60.801	Pelodiscus_sinensis
ENSEEUG00000003493	SMG6	100	44.003	ENSPMGG00000000844	smg6	96	55.090	Periophthalmus_magnuspinnatus
ENSEEUG00000003493	SMG6	100	81.382	ENSPEMG00000020707	Smg6	100	81.382	Peromyscus_maniculatus_bairdii
ENSEEUG00000003493	SMG6	100	44.579	ENSPFOG00000012035	smg6	100	44.542	Poecilia_formosa
ENSEEUG00000003493	SMG6	84	46.293	ENSPLAG00000017660	smg6	74	46.336	Poecilia_latipinna
ENSEEUG00000003493	SMG6	77	47.782	ENSPMEG00000000258	smg6	74	46.493	Poecilia_mexicana
ENSEEUG00000003493	SMG6	84	46.378	ENSPREG00000010066	smg6	74	46.499	Poecilia_reticulata
ENSEEUG00000003493	SMG6	96	85.774	ENSPPYG00000007790	SMG6	96	85.774	Pongo_abelii
ENSEEUG00000003493	SMG6	100	82.734	ENSPCAG00000000552	SMG6	100	82.734	Procavia_capensis
ENSEEUG00000003493	SMG6	100	82.875	ENSPCOG00000020925	SMG6	100	82.875	Propithecus_coquereli
ENSEEUG00000003493	SMG6	84	79.023	ENSPVAG00000002159	SMG6	84	79.023	Pteropus_vampyrus
ENSEEUG00000003493	SMG6	82	60.238	ENSPNYG00000024151	smg6	76	60.287	Pundamilia_nyererei
ENSEEUG00000003493	SMG6	81	53.513	ENSPNAG00000015480	smg6	76	53.453	Pygocentrus_nattereri
ENSEEUG00000003493	SMG6	100	80.973	ENSRNOG00000003041	Smg6	100	80.973	Rattus_norvegicus
ENSEEUG00000003493	SMG6	100	82.030	ENSRBIG00000024746	SMG6	100	82.030	Rhinopithecus_bieti
ENSEEUG00000003493	SMG6	100	82.100	ENSRROG00000030423	SMG6	99	84.510	Rhinopithecus_roxellana
ENSEEUG00000003493	SMG6	100	82.030	ENSSBOG00000022518	SMG6	100	80.338	Saimiri_boliviensis_boliviensis
ENSEEUG00000003493	SMG6	98	74.517	ENSSHAG00000010045	SMG6	98	74.517	Sarcophilus_harrisii
ENSEEUG00000003493	SMG6	74	51.956	ENSSFOG00015005436	smg6	70	48.780	Scleropages_formosus
ENSEEUG00000003493	SMG6	84	47.701	ENSSMAG00000019777	smg6	73	47.050	Scophthalmus_maximus
ENSEEUG00000003493	SMG6	80	58.050	ENSSDUG00000016412	smg6	74	46.552	Seriola_dumerili
ENSEEUG00000003493	SMG6	76	55.190	ENSSLDG00000020747	smg6	77	45.085	Seriola_lalandi_dorsalis
ENSEEUG00000003493	SMG6	99	61.247	ENSSPUG00000007152	SMG6	99	61.107	Sphenodon_punctatus
ENSEEUG00000003493	SMG6	72	50.138	ENSSPAG00000015633	smg6	74	47.286	Stegastes_partitus
ENSEEUG00000003493	SMG6	100	82.861	ENSSSCG00000017826	SMG6	100	82.861	Sus_scrofa
ENSEEUG00000003493	SMG6	100	62.771	ENSTGUG00000005836	SMG6	100	62.719	Taeniopygia_guttata
ENSEEUG00000003493	SMG6	87	45.725	ENSTRUG00000000358	smg6	80	54.021	Takifugu_rubripes
ENSEEUG00000003493	SMG6	100	43.074	ENSTNIG00000016164	smg6	100	43.092	Tetraodon_nigroviridis
ENSEEUG00000003493	SMG6	88	98.093	ENSTBEG00000011424	SMG6	88	98.093	Tupaia_belangeri
ENSEEUG00000003493	SMG6	89	86.774	ENSTTRG00000001175	SMG6	89	86.774	Tursiops_truncatus
ENSEEUG00000003493	SMG6	100	83.663	ENSUAMG00000025152	SMG6	100	83.098	Ursus_americanus
ENSEEUG00000003493	SMG6	98	83.841	ENSUMAG00000009306	SMG6	100	83.841	Ursus_maritimus
ENSEEUG00000003493	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSEEUG00000003493	SMG6	100	83.227	ENSVVUG00000021727	SMG6	100	83.227	Vulpes_vulpes
ENSEEUG00000003493	SMG6	98	52.020	ENSXETG00000023799	SMG6	99	51.771	Xenopus_tropicalis
ENSEEUG00000003493	SMG6	84	46.640	ENSXCOG00000009867	smg6	74	46.843	Xiphophorus_couchianus
ENSEEUG00000003493	SMG6	84	46.473	ENSXMAG00000010321	smg6	74	46.515	Xiphophorus_maculatus