EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSEEUG00000004102 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Erinaceus_europaeus
Status
putative
Strand
Minus strand
Length
186 bases
Position
chrscaffold_333644:4253-4438
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEEUP00000003706LSMPF01423.227.3e-1511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEEUT00000004076LSM5-201180-ENSEEUP0000000370660 (aa)-UPI0000F61232
Gene Model
Click here to download ENSEEUG00000004102's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000004102's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEEUG00000004102LSM59793.103ENSG00000106355LSM59493.103Homo_sapiens
ENSEEUG00000004102LSM59791.379ENSAPOG00000011743LSM59491.379Acanthochromis_polyacanthus
ENSEEUG00000004102LSM59592.982ENSAPOG00000020779LSM56392.982Acanthochromis_polyacanthus
ENSEEUG00000004102LSM59594.737ENSAMEG00000006700LSM56394.737Ailuropoda_melanoleuca
ENSEEUG00000004102LSM57586.667ENSACIG00000019185lsm58086.667Amphilophus_citrinellus
ENSEEUG00000004102LSM59592.982ENSAOCG00000001636lsm56392.982Amphiprion_ocellaris
ENSEEUG00000004102LSM59592.982ENSAPEG00000008151lsm56392.982Amphiprion_percula
ENSEEUG00000004102LSM59791.379ENSAPEG00000008201lsm59491.379Amphiprion_percula
ENSEEUG00000004102LSM58291.837ENSATEG00000020470lsm57686.667Anabas_testudineus
ENSEEUG00000004102LSM59394.643ENSAPLG00000008171LSM57694.643Anas_platyrhynchos
ENSEEUG00000004102LSM59594.737ENSANAG00000034409-6394.737Aotus_nancymaae
ENSEEUG00000004102LSM59589.474ENSANAG00000024192-5989.474Aotus_nancymaae
ENSEEUG00000004102LSM59782.759ENSANAG00000037758-7282.759Aotus_nancymaae
ENSEEUG00000004102LSM59592.982ENSACLG00000012891lsm56592.982Astatotilapia_calliptera
ENSEEUG00000004102LSM57290.698ENSAMXG00000035543lsm56475.000Astyanax_mexicanus
ENSEEUG00000004102LSM59594.737ENSBTAG00000002332LSM56394.737Bos_taurus
ENSEEUG00000004102LSM59577.193WBGene00003079lsm-56377.193Caenorhabditis_elegans
ENSEEUG00000004102LSM59585.965ENSCJAG00000005678-6385.965Callithrix_jacchus
ENSEEUG00000004102LSM59592.982ENSCAFG00000019261-6392.982Canis_familiaris
ENSEEUG00000004102LSM59594.737ENSCAFG00020004946LSM56394.737Canis_lupus_dingo
ENSEEUG00000004102LSM59594.737ENSCHIG00000024539LSM56394.737Capra_hircus
ENSEEUG00000004102LSM59591.228ENSCHIG00000004079-6291.228Capra_hircus
ENSEEUG00000004102LSM56868.293ENSCHIG00000021428-5865.455Capra_hircus
ENSEEUG00000004102LSM59563.158ENSTSYG00000036637-5363.158Carlito_syrichta
ENSEEUG00000004102LSM59594.737ENSTSYG00000006449-6394.737Carlito_syrichta
ENSEEUG00000004102LSM59385.714ENSTSYG00000028728-6685.714Carlito_syrichta
ENSEEUG00000004102LSM59585.965ENSTSYG00000026530-6285.965Carlito_syrichta
ENSEEUG00000004102LSM59584.211ENSCAPG00000006980LSM57684.211Cavia_aperea
ENSEEUG00000004102LSM59594.737ENSCPOG00000036386LSM57688.889Cavia_porcellus
ENSEEUG00000004102LSM59592.982ENSCCAG00000000821-6392.982Cebus_capucinus
ENSEEUG00000004102LSM59594.737ENSCCAG00000037808-6394.737Cebus_capucinus
ENSEEUG00000004102LSM59592.982ENSCCAG00000032123-6392.982Cebus_capucinus
ENSEEUG00000004102LSM59781.034ENSCCAG00000037334-7581.034Cebus_capucinus
ENSEEUG00000004102LSM59786.207ENSCCAG00000032792-7286.207Cebus_capucinus
ENSEEUG00000004102LSM59580.702ENSCATG00000014790-6080.702Cercocebus_atys
ENSEEUG00000004102LSM59793.103ENSCATG00000040218LSM59493.103Cercocebus_atys
ENSEEUG00000004102LSM59594.737ENSCLAG00000000202LSM57688.889Chinchilla_lanigera
ENSEEUG00000004102LSM59777.586ENSCLAG00000005062-5877.586Chinchilla_lanigera
ENSEEUG00000004102LSM57092.857ENSCHOG00000005335LSM55592.857Choloepus_hoffmanni
ENSEEUG00000004102LSM59594.737ENSCPBG00000013685LSM56394.737Chrysemys_picta_bellii
ENSEEUG00000004102LSM59786.207ENSCING00000020625-6586.207Ciona_intestinalis
ENSEEUG00000004102LSM59786.207ENSCSAVG00000001439-6686.207Ciona_savignyi
ENSEEUG00000004102LSM59793.103ENSCANG00000039909LSM59493.103Colobus_angolensis_palliatus
ENSEEUG00000004102LSM59594.737ENSCGRG00001015461Lsm57688.889Cricetulus_griseus_chok1gshd
ENSEEUG00000004102LSM59594.737ENSCGRG00000007677Lsm57694.737Cricetulus_griseus_crigri
ENSEEUG00000004102LSM57586.667ENSCSEG00000015286lsm57686.667Cynoglossus_semilaevis
ENSEEUG00000004102LSM59791.379ENSCVAG00000004262lsm56591.379Cyprinodon_variegatus
ENSEEUG00000004102LSM59791.379ENSDARG00000071573lsm59491.379Danio_rerio
ENSEEUG00000004102LSM59088.889ENSDNOG00000049495-5988.889Dasypus_novemcinctus
ENSEEUG00000004102LSM59594.737ENSDNOG00000034958LSM56394.737Dasypus_novemcinctus
ENSEEUG00000004102LSM59594.737ENSDORG00000009422Lsm57688.889Dipodomys_ordii
ENSEEUG00000004102LSM59580.702FBgn0035675CG66106380.702Drosophila_melanogaster
ENSEEUG00000004102LSM59568.421ENSETEG00000001469-5768.421Echinops_telfairi
ENSEEUG00000004102LSM59571.930ENSETEG00000010651-5971.930Echinops_telfairi
ENSEEUG00000004102LSM58269.388ENSETEG00000000777-5669.388Echinops_telfairi
ENSEEUG00000004102LSM59594.737ENSETEG00000018068LSM56394.737Echinops_telfairi
ENSEEUG00000004102LSM59571.930ENSETEG00000016074-7271.930Echinops_telfairi
ENSEEUG00000004102LSM59587.719ENSEBUG00000008540lsm56387.719Eptatretus_burgeri
ENSEEUG00000004102LSM59594.737ENSEASG00005003500LSM56394.737Equus_asinus_asinus
ENSEEUG00000004102LSM59573.684ENSECAG00000018445LSM55973.684Equus_caballus
ENSEEUG00000004102LSM59592.982ENSELUG00000007792lsm56392.982Esox_lucius
ENSEEUG00000004102LSM59594.737ENSFCAG00000000230LSM56394.737Felis_catus
ENSEEUG00000004102LSM59594.737ENSFALG00000001892LSM56994.737Ficedula_albicollis
ENSEEUG00000004102LSM59568.421ENSFDAG00000008685-6368.421Fukomys_damarensis
ENSEEUG00000004102LSM59594.737ENSFDAG00000008767LSM57688.889Fukomys_damarensis
ENSEEUG00000004102LSM59577.193ENSFHEG00000004011lsm56077.193Fundulus_heteroclitus
ENSEEUG00000004102LSM59592.982ENSGMOG00000018235lsm56392.982Gadus_morhua
ENSEEUG00000004102LSM59594.737ENSGALG00000041625LSM56394.737Gallus_gallus
ENSEEUG00000004102LSM59791.379ENSGAFG00000016824lsm59491.379Gambusia_affinis
ENSEEUG00000004102LSM59592.982ENSGACG00000005528lsm56392.982Gasterosteus_aculeatus
ENSEEUG00000004102LSM59594.737ENSGAGG00000015593LSM56394.737Gopherus_agassizii
ENSEEUG00000004102LSM59594.737ENSGGOG00000043469LSM56394.737Gorilla_gorilla
ENSEEUG00000004102LSM59592.982ENSHBUG00000013773lsm56592.982Haplochromis_burtoni
ENSEEUG00000004102LSM59594.737ENSHGLG00000011765LSM57688.889Heterocephalus_glaber_female
ENSEEUG00000004102LSM59594.737ENSHGLG00100015610LSM57593.023Heterocephalus_glaber_male
ENSEEUG00000004102LSM57584.444ENSHCOG00000008288lsm57684.444Hippocampus_comes
ENSEEUG00000004102LSM59592.982ENSIPUG00000021095LSM56392.982Ictalurus_punctatus
ENSEEUG00000004102LSM59594.737ENSSTOG00000012662LSM57688.889Ictidomys_tridecemlineatus
ENSEEUG00000004102LSM59580.702ENSSTOG00000033886-6480.702Ictidomys_tridecemlineatus
ENSEEUG00000004102LSM59594.737ENSJJAG00000012145-7688.889Jaculus_jaculus
ENSEEUG00000004102LSM510075.000ENSJJAG00000016144-7275.000Jaculus_jaculus
ENSEEUG00000004102LSM57887.234ENSJJAG00000004475-5987.234Jaculus_jaculus
ENSEEUG00000004102LSM59591.228ENSKMAG00000021861lsm56391.228Kryptolebias_marmoratus
ENSEEUG00000004102LSM59591.228ENSLACG00000022448LSM56391.228Latimeria_chalumnae
ENSEEUG00000004102LSM59592.982ENSLOCG00000012903lsm56392.982Lepisosteus_oculatus
ENSEEUG00000004102LSM59594.737ENSLAFG00000029579LSM56394.737Loxodonta_africana
ENSEEUG00000004102LSM59582.456ENSLAFG00000027938-7282.456Loxodonta_africana
ENSEEUG00000004102LSM59592.982ENSMFAG00000030152-6392.982Macaca_fascicularis
ENSEEUG00000004102LSM59594.737ENSMFAG00000038508LSM56394.737Macaca_fascicularis
ENSEEUG00000004102LSM59582.456ENSMMUG00000039822-6082.456Macaca_mulatta
ENSEEUG00000004102LSM59592.982ENSMMUG00000030131-6392.982Macaca_mulatta
ENSEEUG00000004102LSM59592.982ENSMNEG00000037935-6392.982Macaca_nemestrina
ENSEEUG00000004102LSM59793.103ENSMNEG00000015331LSM59493.103Macaca_nemestrina
ENSEEUG00000004102LSM59594.737ENSMLEG00000024945LSM56394.737Mandrillus_leucophaeus
ENSEEUG00000004102LSM59580.702ENSMLEG00000034037-6080.702Mandrillus_leucophaeus
ENSEEUG00000004102LSM59587.719ENSMAMG00000012869lsm56387.719Mastacembelus_armatus
ENSEEUG00000004102LSM59592.982ENSMZEG00005019554lsm56592.982Maylandia_zebra
ENSEEUG00000004102LSM59594.737ENSMGAG00000012117LSM56394.737Meleagris_gallopavo
ENSEEUG00000004102LSM59594.737ENSMAUG00000008132-6394.737Mesocricetus_auratus
ENSEEUG00000004102LSM59594.737ENSMAUG00000012222Lsm57688.889Mesocricetus_auratus
ENSEEUG00000004102LSM59594.737ENSMICG00000005353LSM56394.737Microcebus_murinus
ENSEEUG00000004102LSM59791.379ENSMICG00000033928-7591.379Microcebus_murinus
ENSEEUG00000004102LSM59594.737ENSMOCG00000012018Lsm57688.889Microtus_ochrogaster
ENSEEUG00000004102LSM59592.982ENSMMOG00000004026lsm56692.982Mola_mola
ENSEEUG00000004102LSM59793.103ENSMODG00000013274-9493.103Monodelphis_domestica
ENSEEUG00000004102LSM59786.207ENSMALG00000010343lsm59486.207Monopterus_albus
ENSEEUG00000004102LSM59594.737MGP_CAROLIEiJ_G0028421Lsm57688.889Mus_caroli
ENSEEUG00000004102LSM59594.737ENSMUSG00000091625Lsm57688.889Mus_musculus
ENSEEUG00000004102LSM59594.737MGP_PahariEiJ_G0022171Lsm57688.889Mus_pahari
ENSEEUG00000004102LSM59594.737MGP_SPRETEiJ_G0029423Lsm57688.889Mus_spretus
ENSEEUG00000004102LSM59594.737ENSMLUG00000017028LSM56394.737Myotis_lucifugus
ENSEEUG00000004102LSM58085.417ENSNGAG00000022569-5885.417Nannospalax_galili
ENSEEUG00000004102LSM59594.737ENSNGAG00000024142Lsm57688.889Nannospalax_galili
ENSEEUG00000004102LSM58887.273ENSNGAG00000017707-6387.273Nannospalax_galili
ENSEEUG00000004102LSM59589.474ENSNBRG00000011386lsm57689.474Neolamprologus_brichardi
ENSEEUG00000004102LSM59594.737ENSNLEG00000015268LSM56394.737Nomascus_leucogenys
ENSEEUG00000004102LSM59594.737ENSOPRG00000002443LSM57694.737Ochotona_princeps
ENSEEUG00000004102LSM59594.737ENSODEG00000008258-7688.889Octodon_degus
ENSEEUG00000004102LSM59594.737ENSODEG00000019072-6394.737Octodon_degus
ENSEEUG00000004102LSM58860.377ENSOANG00000014540-7160.377Ornithorhynchus_anatinus
ENSEEUG00000004102LSM59594.737ENSOCUG00000029043LSM56394.737Oryctolagus_cuniculus
ENSEEUG00000004102LSM59591.228ENSORLG00020003019lsm55991.228Oryzias_latipes_hni
ENSEEUG00000004102LSM59591.228ENSORLG00015003338lsm56391.228Oryzias_latipes_hsok
ENSEEUG00000004102LSM59591.228ENSOMEG00000001078lsm56391.228Oryzias_melastigma
ENSEEUG00000004102LSM59594.737ENSOGAG00000013892LSM56394.737Otolemur_garnettii
ENSEEUG00000004102LSM59594.737ENSOARG00000006944LSM56394.737Ovis_aries
ENSEEUG00000004102LSM59594.737ENSPPAG00000003697-6394.737Pan_paniscus
ENSEEUG00000004102LSM59594.737ENSPPRG00000002550LSM56394.737Panthera_pardus
ENSEEUG00000004102LSM59594.737ENSPTIG00000015604LSM56394.737Panthera_tigris_altaica
ENSEEUG00000004102LSM59571.930ENSPTRG00000049488-6173.684Pan_troglodytes
ENSEEUG00000004102LSM59594.737ENSPTRG00000019057LSM56394.737Pan_troglodytes
ENSEEUG00000004102LSM59582.456ENSPANG00000032538-6082.456Papio_anubis
ENSEEUG00000004102LSM59592.982ENSPANG00000033477-6392.982Papio_anubis
ENSEEUG00000004102LSM59594.737ENSPANG00000032179-6394.737Papio_anubis
ENSEEUG00000004102LSM59592.982ENSPKIG00000011910lsm56392.982Paramormyrops_kingsleyae
ENSEEUG00000004102LSM59394.643ENSPSIG00000014796LSM57694.643Pelodiscus_sinensis
ENSEEUG00000004102LSM59791.379ENSPMGG00000011699lsm59491.379Periophthalmus_magnuspinnatus
ENSEEUG00000004102LSM59767.241ENSPEMG00000022375-6067.241Peromyscus_maniculatus_bairdii
ENSEEUG00000004102LSM59592.982ENSPFOG00000001433lsm56392.982Poecilia_formosa
ENSEEUG00000004102LSM59592.982ENSPLAG00000009665lsm56392.982Poecilia_latipinna
ENSEEUG00000004102LSM59592.982ENSPMEG00000022265lsm56392.982Poecilia_mexicana
ENSEEUG00000004102LSM59791.379ENSPREG00000022452lsm59491.379Poecilia_reticulata
ENSEEUG00000004102LSM59589.474ENSPPYG00000017661LSM56389.474Pongo_abelii
ENSEEUG00000004102LSM58093.750ENSPCAG00000013740LSM55993.750Procavia_capensis
ENSEEUG00000004102LSM59594.737ENSPVAG00000009786LSM56394.737Pteropus_vampyrus
ENSEEUG00000004102LSM59592.982ENSPNYG00000022236lsm56592.982Pundamilia_nyererei
ENSEEUG00000004102LSM59592.982ENSPNAG00000001887lsm56392.982Pygocentrus_nattereri
ENSEEUG00000004102LSM59794.828ENSRNOG00000027305AABR07065089.16394.828Rattus_norvegicus
ENSEEUG00000004102LSM59594.737ENSRNOG00000042126Lsm56394.737Rattus_norvegicus
ENSEEUG00000004102LSM59793.103ENSRBIG00000027803-9493.103Rhinopithecus_bieti
ENSEEUG00000004102LSM59594.737ENSRBIG00000030340-6394.737Rhinopithecus_bieti
ENSEEUG00000004102LSM59594.737ENSRBIG00000030714-6394.737Rhinopithecus_bieti
ENSEEUG00000004102LSM59592.982ENSRBIG00000024431-6392.982Rhinopithecus_bieti
ENSEEUG00000004102LSM59793.103ENSRROG00000042782-9493.103Rhinopithecus_roxellana
ENSEEUG00000004102LSM59594.737ENSRROG00000004655-6394.737Rhinopithecus_roxellana
ENSEEUG00000004102LSM59594.737ENSRROG00000023884-6394.737Rhinopithecus_roxellana
ENSEEUG00000004102LSM59050.847YER146W-6350.847Saccharomyces_cerevisiae
ENSEEUG00000004102LSM59594.737ENSSBOG00000012312LSM56394.737Saimiri_boliviensis_boliviensis
ENSEEUG00000004102LSM59592.982ENSSBOG00000019124-6392.982Saimiri_boliviensis_boliviensis
ENSEEUG00000004102LSM59781.034ENSSBOG00000034794-7281.034Saimiri_boliviensis_boliviensis
ENSEEUG00000004102LSM59592.982ENSSFOG00015010099lsm56392.982Scleropages_formosus
ENSEEUG00000004102LSM57586.667ENSSMAG00000007895lsm57686.667Scophthalmus_maximus
ENSEEUG00000004102LSM59791.379ENSSDUG00000010762lsm59491.379Seriola_dumerili
ENSEEUG00000004102LSM59592.982ENSSLDG00000025242lsm57686.667Seriola_lalandi_dorsalis
ENSEEUG00000004102LSM59074.074ENSSLDG00000008014-6474.074Seriola_lalandi_dorsalis
ENSEEUG00000004102LSM59554.386ENSSARG00000003330LSM56354.386Sorex_araneus
ENSEEUG00000004102LSM59791.379ENSSPUG00000002690LSM59491.379Sphenodon_punctatus
ENSEEUG00000004102LSM57586.667ENSSPAG00000005435lsm57686.667Stegastes_partitus
ENSEEUG00000004102LSM56080.556ENSSSCG00000029661-5080.556Sus_scrofa
ENSEEUG00000004102LSM59594.737ENSSSCG00000026064-6394.737Sus_scrofa
ENSEEUG00000004102LSM59594.737ENSTGUG00000017539LSM56394.737Taeniopygia_guttata
ENSEEUG00000004102LSM59591.228ENSTNIG00000008695lsm56591.228Tetraodon_nigroviridis
ENSEEUG00000004102LSM59594.737ENSTBEG00000004876LSM56394.737Tupaia_belangeri
ENSEEUG00000004102LSM59594.737ENSTTRG00000004237LSM56394.737Tursiops_truncatus
ENSEEUG00000004102LSM59594.737ENSVPAG00000009985LSM56394.737Vicugna_pacos
ENSEEUG00000004102LSM59594.737ENSVVUG00000021311LSM56394.737Vulpes_vulpes
ENSEEUG00000004102LSM58291.837ENSXETG00000026465lsm56091.837Xenopus_tropicalis
ENSEEUG00000004102LSM59791.379ENSXCOG00000015348lsm59491.379Xiphophorus_couchianus
ENSEEUG00000004102LSM59592.982ENSXMAG00000029988lsm56392.982Xiphophorus_maculatus

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