EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEEUG00000005978 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Plus strand
Length: 36270 bases
Position: chrGeneScaffold_6540:29835-66104
Accession: 103120444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000005458	PABP	PF00658.18	3.6e-27	1	1
ENSEEUP00000005458	RRM_5	PF13893.6	1.4e-09	1	1
ENSEEUP00000005458	RRM_1	PF00076.22	5.5e-90	1	4
ENSEEUP00000005458	RRM_1	PF00076.22	5.5e-90	2	4
ENSEEUP00000005458	RRM_1	PF00076.22	5.5e-90	3	4
ENSEEUP00000005458	RRM_1	PF00076.22	5.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000005983	PABPC1L-201	1836	XM_016191589	ENSEEUP00000005458	611 (aa)	XP_016047075	UPI0000F62929

Gene Model

Click here to download ENSEEUG00000005978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000005978's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEEUG00000005978	PABPC1L	99	62.037	ENSEEUG00000002962	PABPC4	98	62.250
ENSEEUG00000005978	PABPC1L	59	40.278	ENSEEUG00000008733	ELAVL2	83	40.278
ENSEEUG00000005978	PABPC1L	63	33.735	ENSEEUG00000008766	ELAVL4	78	41.667
ENSEEUG00000005978	PABPC1L	60	68.528	ENSEEUG00000008203	-	99	68.528
ENSEEUG00000005978	PABPC1L	99	62.653	ENSEEUG00000002701	PABPC1	99	63.139
ENSEEUG00000005978	PABPC1L	57	31.176	ENSEEUG00000009941	-	65	31.707
ENSEEUG00000005978	PABPC1L	57	32.680	ENSEEUG00000011837	-	68	30.128
ENSEEUG00000005978	PABPC1L	59	36.047	ENSEEUG00000005658	CELF2	67	36.047

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000005978	PABPC1L	100	83.225	ENSG00000101104	PABPC1L	99	90.432	Homo_sapiens
ENSEEUG00000005978	PABPC1L	99	64.355	ENSAPOG00000010842	pabpc1l	99	63.871	Acanthochromis_polyacanthus
ENSEEUG00000005978	PABPC1L	99	76.406	ENSAMEG00000004099	PABPC1L	100	76.995	Ailuropoda_melanoleuca
ENSEEUG00000005978	PABPC1L	99	65.916	ENSACIG00000021004	-	99	72.549	Amphilophus_citrinellus
ENSEEUG00000005978	PABPC1L	99	64.640	ENSAOCG00000006167	-	99	64.640	Amphiprion_ocellaris
ENSEEUG00000005978	PABPC1L	99	66.612	ENSAPEG00000010558	-	97	78.713	Amphiprion_percula
ENSEEUG00000005978	PABPC1L	99	66.885	ENSATEG00000007428	pabpc1l	99	66.885	Anabas_testudineus
ENSEEUG00000005978	PABPC1L	98	71.452	ENSAPLG00000008415	PABPC1L	99	71.337	Anas_platyrhynchos
ENSEEUG00000005978	PABPC1L	99	71.292	ENSACAG00000011841	PABPC1L	98	71.292	Anolis_carolinensis
ENSEEUG00000005978	PABPC1L	100	81.759	ENSANAG00000026826	PABPC1L	100	81.759	Aotus_nancymaae
ENSEEUG00000005978	PABPC1L	99	65.974	ENSACLG00000024791	pabpc1l	99	65.974	Astatotilapia_calliptera
ENSEEUG00000005978	PABPC1L	99	66.984	ENSAMXG00000013552	pabpc1l	99	66.984	Astyanax_mexicanus
ENSEEUG00000005978	PABPC1L	60	92.857	ENSBTAG00000055300	-	100	92.857	Bos_taurus
ENSEEUG00000005978	PABPC1L	66	78.519	ENSBTAG00000016849	PABPC1L	81	78.519	Bos_taurus
ENSEEUG00000005978	PABPC1L	60	75.862	ENSCJAG00000038506	-	100	75.862	Callithrix_jacchus
ENSEEUG00000005978	PABPC1L	100	81.922	ENSCJAG00000017628	PABPC1L	100	81.922	Callithrix_jacchus
ENSEEUG00000005978	PABPC1L	99	72.783	ENSCAFG00000009573	PABPC1L	100	72.783	Canis_familiaris
ENSEEUG00000005978	PABPC1L	99	84.804	ENSCAFG00020013828	PABPC1L	99	84.804	Canis_lupus_dingo
ENSEEUG00000005978	PABPC1L	97	82.776	ENSCHIG00000025759	PABPC1L	91	82.776	Capra_hircus
ENSEEUG00000005978	PABPC1L	100	80.619	ENSTSYG00000006645	PABPC1L	100	80.619	Carlito_syrichta
ENSEEUG00000005978	PABPC1L	99	74.499	ENSCAPG00000014519	PABPC1L	100	74.499	Cavia_aperea
ENSEEUG00000005978	PABPC1L	100	77.742	ENSCPOG00000013633	PABPC1L	100	77.742	Cavia_porcellus
ENSEEUG00000005978	PABPC1L	100	81.270	ENSCCAG00000023338	PABPC1L	100	81.759	Cebus_capucinus
ENSEEUG00000005978	PABPC1L	100	83.388	ENSCATG00000034065	PABPC1L	100	83.388	Cercocebus_atys
ENSEEUG00000005978	PABPC1L	100	76.935	ENSCLAG00000005298	PABPC1L	100	78.065	Chinchilla_lanigera
ENSEEUG00000005978	PABPC1L	100	83.225	ENSCSAG00000014242	PABPC1L	100	83.225	Chlorocebus_sabaeus
ENSEEUG00000005978	PABPC1L	54	78.788	ENSCPBG00000007810	-	81	78.788	Chrysemys_picta_bellii
ENSEEUG00000005978	PABPC1L	72	81.222	ENSCPBG00000017755	-	99	81.222	Chrysemys_picta_bellii
ENSEEUG00000005978	PABPC1L	97	49.287	ENSCING00000002796	-	97	49.491	Ciona_intestinalis
ENSEEUG00000005978	PABPC1L	81	75.904	ENSCSAVG00000004246	-	89	75.904	Ciona_savignyi
ENSEEUG00000005978	PABPC1L	98	56.667	ENSCSAVG00000003102	-	100	80.137	Ciona_savignyi
ENSEEUG00000005978	PABPC1L	100	79.100	ENSCANG00000037530	PABPC1L	100	79.100	Colobus_angolensis_palliatus
ENSEEUG00000005978	PABPC1L	99	73.420	ENSCGRG00001021938	Pabpc1l	99	73.420	Cricetulus_griseus_chok1gshd
ENSEEUG00000005978	PABPC1L	99	73.420	ENSCGRG00000007946	Pabpc1l	99	73.420	Cricetulus_griseus_crigri
ENSEEUG00000005978	PABPC1L	98	62.895	ENSCSEG00000021295	pabpc1l	99	62.895	Cynoglossus_semilaevis
ENSEEUG00000005978	PABPC1L	99	66.451	ENSCVAG00000015943	-	86	84.733	Cyprinodon_variegatus
ENSEEUG00000005978	PABPC1L	99	67.464	ENSDARG00000002597	pabpc1l	90	84.848	Danio_rerio
ENSEEUG00000005978	PABPC1L	99	83.770	ENSDNOG00000048450	PABPC1L	99	83.770	Dasypus_novemcinctus
ENSEEUG00000005978	PABPC1L	99	80.788	ENSDORG00000001067	Pabpc1l	99	80.788	Dipodomys_ordii
ENSEEUG00000005978	PABPC1L	96	85.772	ENSETEG00000009969	PABPC1L	73	85.772	Echinops_telfairi
ENSEEUG00000005978	PABPC1L	52	90.683	ENSEASG00005023407	-	65	90.683	Equus_asinus_asinus
ENSEEUG00000005978	PABPC1L	60	91.667	ENSEASG00005023408	-	100	91.667	Equus_asinus_asinus
ENSEEUG00000005978	PABPC1L	67	87.719	ENSECAG00000040139	-	81	87.719	Equus_caballus
ENSEEUG00000005978	PABPC1L	99	67.675	ENSELUG00000001811	pabpc1l	99	67.675	Esox_lucius
ENSEEUG00000005978	PABPC1L	99	86.275	ENSFCAG00000011692	PABPC1L	99	86.275	Felis_catus
ENSEEUG00000005978	PABPC1L	86	71.614	ENSFALG00000005372	PABPC1L	98	66.610	Ficedula_albicollis
ENSEEUG00000005978	PABPC1L	100	77.850	ENSFDAG00000008291	PABPC1L	100	77.850	Fukomys_damarensis
ENSEEUG00000005978	PABPC1L	99	67.103	ENSFHEG00000003398	pabpc1l	99	67.103	Fundulus_heteroclitus
ENSEEUG00000005978	PABPC1L	100	66.989	ENSGMOG00000004437	pabpc1l	99	66.989	Gadus_morhua
ENSEEUG00000005978	PABPC1L	85	79.376	ENSGALG00000004123	PABPC1L	98	82.725	Gallus_gallus
ENSEEUG00000005978	PABPC1L	99	62.769	ENSGAFG00000021057	pabpc1l	99	62.769	Gambusia_affinis
ENSEEUG00000005978	PABPC1L	99	65.120	ENSGACG00000002792	pabpc1l	99	65.120	Gasterosteus_aculeatus
ENSEEUG00000005978	PABPC1L	99	73.609	ENSGAGG00000000589	PABPC1L	94	78.912	Gopherus_agassizii
ENSEEUG00000005978	PABPC1L	100	83.225	ENSGGOG00000004584	PABPC1L	100	83.225	Gorilla_gorilla
ENSEEUG00000005978	PABPC1L	99	65.815	ENSHBUG00000006134	pabpc1l	99	65.815	Haplochromis_burtoni
ENSEEUG00000005978	PABPC1L	100	79.160	ENSHGLG00000008434	PABPC1L	100	79.160	Heterocephalus_glaber_female
ENSEEUG00000005978	PABPC1L	100	79.160	ENSHGLG00100012151	PABPC1L	100	79.160	Heterocephalus_glaber_male
ENSEEUG00000005978	PABPC1L	59	80.899	ENSHGLG00100019506	-	100	80.899	Heterocephalus_glaber_male
ENSEEUG00000005978	PABPC1L	99	65.232	ENSHCOG00000009270	pabpc1l	99	65.829	Hippocampus_comes
ENSEEUG00000005978	PABPC1L	99	68.051	ENSIPUG00000012602	pabpc1l	99	68.051	Ictalurus_punctatus
ENSEEUG00000005978	PABPC1L	60	60.920	ENSIPUG00000006780	-	86	60.920	Ictalurus_punctatus
ENSEEUG00000005978	PABPC1L	60	60.345	ENSIPUG00000006760	-	89	60.345	Ictalurus_punctatus
ENSEEUG00000005978	PABPC1L	100	81.759	ENSSTOG00000003739	PABPC1L	100	81.759	Ictidomys_tridecemlineatus
ENSEEUG00000005978	PABPC1L	99	65.876	ENSJJAG00000022406	Pabpc1l	99	63.029	Jaculus_jaculus
ENSEEUG00000005978	PABPC1L	99	66.397	ENSKMAG00000016847	pabpc1l	99	66.397	Kryptolebias_marmoratus
ENSEEUG00000005978	PABPC1L	99	65.280	ENSLBEG00000010084	pabpc1l	99	65.280	Labrus_bergylta
ENSEEUG00000005978	PABPC1L	99	67.192	ENSLACG00000005762	PABPC1L	99	67.192	Latimeria_chalumnae
ENSEEUG00000005978	PABPC1L	99	67.457	ENSLOCG00000007519	pabpc1l	99	67.457	Lepisosteus_oculatus
ENSEEUG00000005978	PABPC1L	99	79.487	ENSLAFG00000003553	PABPC1L	100	79.487	Loxodonta_africana
ENSEEUG00000005978	PABPC1L	100	83.550	ENSMFAG00000040365	PABPC1L	100	83.550	Macaca_fascicularis
ENSEEUG00000005978	PABPC1L	100	81.199	ENSMNEG00000032298	PABPC1L	100	81.199	Macaca_nemestrina
ENSEEUG00000005978	PABPC1L	100	83.388	ENSMLEG00000043139	PABPC1L	100	83.388	Mandrillus_leucophaeus
ENSEEUG00000005978	PABPC1L	98	65.132	ENSMAMG00000011854	pabpc1l	98	65.132	Mastacembelus_armatus
ENSEEUG00000005978	PABPC1L	99	65.974	ENSMZEG00005023713	pabpc1l	99	65.974	Maylandia_zebra
ENSEEUG00000005978	PABPC1L	99	72.303	ENSMGAG00000003674	PABPC1L	99	72.071	Meleagris_gallopavo
ENSEEUG00000005978	PABPC1L	99	72.447	ENSMOCG00000013186	Pabpc1l	99	72.447	Microtus_ochrogaster
ENSEEUG00000005978	PABPC1L	99	66.071	ENSMMOG00000020574	-	91	84.848	Mola_mola
ENSEEUG00000005978	PABPC1L	97	74.833	ENSMODG00000016198	PABPC1L	99	74.833	Monodelphis_domestica
ENSEEUG00000005978	PABPC1L	97	65.353	ENSMALG00000021622	pabpc1l	100	65.353	Monopterus_albus
ENSEEUG00000005978	PABPC1L	99	72.609	MGP_CAROLIEiJ_G0024627	Pabpc1l	100	72.609	Mus_caroli
ENSEEUG00000005978	PABPC1L	99	72.771	ENSMUSG00000054582	Pabpc1l	100	72.771	Mus_musculus
ENSEEUG00000005978	PABPC1L	99	73.409	MGP_PahariEiJ_G0026071	Pabpc1l	99	73.409	Mus_pahari
ENSEEUG00000005978	PABPC1L	99	72.771	MGP_SPRETEiJ_G0025549	Pabpc1l	100	72.771	Mus_spretus
ENSEEUG00000005978	PABPC1L	99	83.762	ENSMPUG00000017646	PABPC1L	99	83.762	Mustela_putorius_furo
ENSEEUG00000005978	PABPC1L	98	76.812	ENSMLUG00000006324	PABPC1L	98	76.812	Myotis_lucifugus
ENSEEUG00000005978	PABPC1L	99	75.980	ENSNGAG00000010458	Pabpc1l	99	75.980	Nannospalax_galili
ENSEEUG00000005978	PABPC1L	99	66.184	ENSNBRG00000016633	pabpc1l	99	71.942	Neolamprologus_brichardi
ENSEEUG00000005978	PABPC1L	100	64.169	ENSMEUG00000007905	-	100	64.169	Notamacropus_eugenii
ENSEEUG00000005978	PABPC1L	100	80.976	ENSOPRG00000011846	PABPC1L	100	80.976	Ochotona_princeps
ENSEEUG00000005978	PABPC1L	100	72.549	ENSODEG00000015482	PABPC1L	100	72.549	Octodon_degus
ENSEEUG00000005978	PABPC1L	58	74.375	ENSODEG00000002920	-	97	74.375	Octodon_degus
ENSEEUG00000005978	PABPC1L	99	66.294	ENSONIG00000017314	pabpc1l	99	66.294	Oreochromis_niloticus
ENSEEUG00000005978	PABPC1L	89	63.653	ENSOANG00000015793	-	100	63.653	Ornithorhynchus_anatinus
ENSEEUG00000005978	PABPC1L	99	73.538	ENSOCUG00000003005	PABPC1L	100	73.538	Oryctolagus_cuniculus
ENSEEUG00000005978	PABPC1L	99	65.316	ENSORLG00000010322	pabpc1l	99	71.807	Oryzias_latipes
ENSEEUG00000005978	PABPC1L	99	65.640	ENSORLG00020021193	pabpc1l	99	71.807	Oryzias_latipes_hni
ENSEEUG00000005978	PABPC1L	99	65.154	ENSORLG00015017018	pabpc1l	99	71.807	Oryzias_latipes_hsok
ENSEEUG00000005978	PABPC1L	99	62.481	ENSOMEG00000010789	pabpc1l	99	62.481	Oryzias_melastigma
ENSEEUG00000005978	PABPC1L	99	81.410	ENSOGAG00000032999	PABPC1L	100	81.410	Otolemur_garnettii
ENSEEUG00000005978	PABPC1L	99	82.843	ENSOARG00000004578	PABPC1L	99	82.843	Ovis_aries
ENSEEUG00000005978	PABPC1L	100	83.062	ENSPPAG00000039677	PABPC1L	100	83.062	Pan_paniscus
ENSEEUG00000005978	PABPC1L	63	79.012	ENSPPRG00000019327	-	98	79.012	Panthera_pardus
ENSEEUG00000005978	PABPC1L	99	86.258	ENSPTIG00000006524	PABPC1L	99	86.258	Panthera_tigris_altaica
ENSEEUG00000005978	PABPC1L	63	90.123	ENSPTRG00000013531	PABPC1L	99	90.123	Pan_troglodytes
ENSEEUG00000005978	PABPC1L	100	83.388	ENSPANG00000018788	PABPC1L	100	83.388	Papio_anubis
ENSEEUG00000005978	PABPC1L	99	68.921	ENSPKIG00000007322	pabpc1l	99	68.921	Paramormyrops_kingsleyae
ENSEEUG00000005978	PABPC1L	54	81.818	ENSPKIG00000016810	-	93	81.818	Paramormyrops_kingsleyae
ENSEEUG00000005978	PABPC1L	68	81.818	ENSPSIG00000013289	PABPC1L	99	81.818	Pelodiscus_sinensis
ENSEEUG00000005978	PABPC1L	63	83.969	ENSPMGG00000023117	pabpc1l	91	83.969	Periophthalmus_magnuspinnatus
ENSEEUG00000005978	PABPC1L	73	65.366	ENSPMGG00000023121	-	95	65.366	Periophthalmus_magnuspinnatus
ENSEEUG00000005978	PABPC1L	99	72.771	ENSPEMG00000020671	Pabpc1l	99	72.771	Peromyscus_maniculatus_bairdii
ENSEEUG00000005978	PABPC1L	99	66.775	ENSPFOG00000013241	pabpc1l	99	66.181	Poecilia_formosa
ENSEEUG00000005978	PABPC1L	53	86.154	ENSPLAG00000023686	-	92	86.154	Poecilia_latipinna
ENSEEUG00000005978	PABPC1L	99	66.126	ENSPLAG00000017490	-	99	66.126	Poecilia_latipinna
ENSEEUG00000005978	PABPC1L	99	66.124	ENSPMEG00000007677	pabpc1l	99	66.124	Poecilia_mexicana
ENSEEUG00000005978	PABPC1L	53	86.154	ENSPMEG00000009185	-	88	86.154	Poecilia_mexicana
ENSEEUG00000005978	PABPC1L	67	75.912	ENSPREG00000015886	pabpc1l	99	75.912	Poecilia_reticulata
ENSEEUG00000005978	PABPC1L	100	83.225	ENSPPYG00000011042	PABPC1L	100	83.225	Pongo_abelii
ENSEEUG00000005978	PABPC1L	61	89.062	ENSPCAG00000011787	-	74	89.062	Procavia_capensis
ENSEEUG00000005978	PABPC1L	99	83.196	ENSPCOG00000020630	PABPC1L	99	83.196	Propithecus_coquereli
ENSEEUG00000005978	PABPC1L	99	83.197	ENSPVAG00000012663	PABPC1L	100	83.197	Pteropus_vampyrus
ENSEEUG00000005978	PABPC1L	99	64.967	ENSPNYG00000004101	pabpc1l	99	71.942	Pundamilia_nyererei
ENSEEUG00000005978	PABPC1L	99	61.058	ENSPNAG00000021248	pabpc1l	99	61.058	Pygocentrus_nattereri
ENSEEUG00000005978	PABPC1L	99	73.693	ENSRNOG00000012750	Pabpc1l	99	73.693	Rattus_norvegicus
ENSEEUG00000005978	PABPC1L	100	82.899	ENSRBIG00000035381	PABPC1L	100	82.899	Rhinopithecus_bieti
ENSEEUG00000005978	PABPC1L	100	82.736	ENSRROG00000044498	PABPC1L	100	82.736	Rhinopithecus_roxellana
ENSEEUG00000005978	PABPC1L	100	82.085	ENSSBOG00000009532	-	100	82.085	Saimiri_boliviensis_boliviensis
ENSEEUG00000005978	PABPC1L	97	68.916	ENSSHAG00000011446	PABPC1L	100	68.916	Sarcophilus_harrisii
ENSEEUG00000005978	PABPC1L	99	69.726	ENSSFOG00015017304	pabpc1l	99	69.726	Scleropages_formosus
ENSEEUG00000005978	PABPC1L	99	64.148	ENSSMAG00000010516	pabpc1l	98	85.271	Scophthalmus_maximus
ENSEEUG00000005978	PABPC1L	99	66.559	ENSSDUG00000014743	pabpc1l	99	66.559	Seriola_dumerili
ENSEEUG00000005978	PABPC1L	96	66.948	ENSSLDG00000006981	pabpc1l	98	76.256	Seriola_lalandi_dorsalis
ENSEEUG00000005978	PABPC1L	99	71.270	ENSSPUG00000004233	PABPC1L	98	71.270	Sphenodon_punctatus
ENSEEUG00000005978	PABPC1L	99	62.957	ENSSPAG00000017137	pabpc1l	99	62.957	Stegastes_partitus
ENSEEUG00000005978	PABPC1L	99	82.651	ENSSSCG00000007382	PABPC1L	99	82.651	Sus_scrofa
ENSEEUG00000005978	PABPC1L	99	70.347	ENSTGUG00000005114	PABPC1L	99	70.347	Taeniopygia_guttata
ENSEEUG00000005978	PABPC1L	97	65.898	ENSTRUG00000011085	pabpc1l	97	65.898	Takifugu_rubripes
ENSEEUG00000005978	PABPC1L	100	63.593	ENSTNIG00000017903	pabpc1l	99	63.593	Tetraodon_nigroviridis
ENSEEUG00000005978	PABPC1L	95	91.438	ENSTBEG00000002851	PABPC1L	80	91.438	Tupaia_belangeri
ENSEEUG00000005978	PABPC1L	94	82.118	ENSTTRG00000007618	PABPC1L	100	82.264	Tursiops_truncatus
ENSEEUG00000005978	PABPC1L	99	81.596	ENSUAMG00000017682	PABPC1L	99	81.596	Ursus_americanus
ENSEEUG00000005978	PABPC1L	69	87.766	ENSUMAG00000025436	PABPC1L	94	87.766	Ursus_maritimus
ENSEEUG00000005978	PABPC1L	98	91.304	ENSVVUG00000018939	PABPC1L	99	91.304	Vulpes_vulpes
ENSEEUG00000005978	PABPC1L	99	67.147	ENSXETG00000022831	pabpc1l	99	67.147	Xenopus_tropicalis
ENSEEUG00000005978	PABPC1L	99	65.811	ENSXCOG00000005459	pabpc1l	99	81.560	Xiphophorus_couchianus
ENSEEUG00000005978	PABPC1L	99	66.181	ENSXMAG00000017135	pabpc1l	99	66.181	Xiphophorus_maculatus