EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000007819 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 68469 bases
Position: chrGeneScaffold_5201:12372-80840
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000007189	Upf2	PF04050.14	5.6e-29	1	1
ENSEEUP00000007189	MIF4G	PF02854.19	3.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000007892	UPF2-201	3795	-	ENSEEUP00000007189	1264 (aa)	-	UPI0000F6331E

Gene Model

Click here to download ENSEEUG00000007819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000007819's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000007819	UPF2	82	95.208	ENSG00000151461	UPF2	82	95.208	Homo_sapiens
ENSEEUG00000007819	UPF2	68	79.487	ENSAPOG00000015837	UPF2	77	73.620	Acanthochromis_polyacanthus
ENSEEUG00000007819	UPF2	82	95.208	ENSAMEG00000004586	UPF2	82	95.208	Ailuropoda_melanoleuca
ENSEEUG00000007819	UPF2	74	75.281	ENSACIG00000018078	UPF2	82	74.921	Amphilophus_citrinellus
ENSEEUG00000007819	UPF2	74	75.281	ENSAOCG00000016766	UPF2	82	74.528	Amphiprion_ocellaris
ENSEEUG00000007819	UPF2	74	75.441	ENSAPEG00000019084	UPF2	82	74.528	Amphiprion_percula
ENSEEUG00000007819	UPF2	74	75.281	ENSATEG00000021677	UPF2	81	74.688	Anabas_testudineus
ENSEEUG00000007819	UPF2	82	79.553	ENSAPLG00000010287	UPF2	72	81.549	Anas_platyrhynchos
ENSEEUG00000007819	UPF2	82	90.096	ENSACAG00000009259	UPF2	82	90.096	Anolis_carolinensis
ENSEEUG00000007819	UPF2	73	94.855	ENSANAG00000028451	UPF2	74	94.855	Aotus_nancymaae
ENSEEUG00000007819	UPF2	74	75.441	ENSACLG00000012696	UPF2	82	75.157	Astatotilapia_calliptera
ENSEEUG00000007819	UPF2	74	76.266	ENSAMXG00000013700	UPF2	81	77.389	Astyanax_mexicanus
ENSEEUG00000007819	UPF2	82	95.208	ENSBTAG00000000288	UPF2	81	100.000	Bos_taurus
ENSEEUG00000007819	UPF2	82	95.208	ENSCJAG00000020685	UPF2	82	95.208	Callithrix_jacchus
ENSEEUG00000007819	UPF2	82	95.208	ENSCAFG00000004839	UPF2	82	95.208	Canis_familiaris
ENSEEUG00000007819	UPF2	78	97.044	ENSCAFG00020005882	UPF2	81	96.923	Canis_lupus_dingo
ENSEEUG00000007819	UPF2	82	95.208	ENSCHIG00000020359	UPF2	82	95.208	Capra_hircus
ENSEEUG00000007819	UPF2	82	95.527	ENSTSYG00000000935	UPF2	82	95.527	Carlito_syrichta
ENSEEUG00000007819	UPF2	68	98.728	ENSCAPG00000016658	UPF2	70	98.718	Cavia_aperea
ENSEEUG00000007819	UPF2	81	94.534	ENSCPOG00000008809	UPF2	81	94.534	Cavia_porcellus
ENSEEUG00000007819	UPF2	82	94.888	ENSCCAG00000035991	UPF2	86	94.888	Cebus_capucinus
ENSEEUG00000007819	UPF2	82	95.208	ENSCATG00000032679	UPF2	82	95.208	Cercocebus_atys
ENSEEUG00000007819	UPF2	82	94.249	ENSCLAG00000011434	UPF2	82	94.249	Chinchilla_lanigera
ENSEEUG00000007819	UPF2	82	95.208	ENSCSAG00000013372	UPF2	82	95.208	Chlorocebus_sabaeus
ENSEEUG00000007819	UPF2	60	94.595	ENSCHOG00000000422	UPF2	67	90.347	Choloepus_hoffmanni
ENSEEUG00000007819	UPF2	82	92.926	ENSCPBG00000027823	UPF2	82	92.926	Chrysemys_picta_bellii
ENSEEUG00000007819	UPF2	60	41.469	ENSCSAVG00000007772	-	62	44.318	Ciona_savignyi
ENSEEUG00000007819	UPF2	82	80.769	ENSCANG00000040396	UPF2	81	80.357	Colobus_angolensis_palliatus
ENSEEUG00000007819	UPF2	82	92.332	ENSCGRG00001019347	Upf2	82	92.652	Cricetulus_griseus_chok1gshd
ENSEEUG00000007819	UPF2	82	92.332	ENSCGRG00000017993	Upf2	82	92.652	Cricetulus_griseus_crigri
ENSEEUG00000007819	UPF2	73	74.304	ENSCSEG00000003520	UPF2	60	70.014	Cynoglossus_semilaevis
ENSEEUG00000007819	UPF2	70	84.500	ENSCVAG00000006167	UPF2	82	72.727	Cyprinodon_variegatus
ENSEEUG00000007819	UPF2	82	94.569	ENSDNOG00000018160	UPF2	82	94.569	Dasypus_novemcinctus
ENSEEUG00000007819	UPF2	82	91.693	ENSDORG00000002478	Upf2	82	92.013	Dipodomys_ordii
ENSEEUG00000007819	UPF2	63	40.290	FBgn0029992	Upf2	50	41.228	Drosophila_melanogaster
ENSEEUG00000007819	UPF2	63	100.000	ENSETEG00000011583	-	54	100.000	Echinops_telfairi
ENSEEUG00000007819	UPF2	55	69.799	ENSEBUG00000012448	-	75	69.799	Eptatretus_burgeri
ENSEEUG00000007819	UPF2	82	95.208	ENSEASG00005019274	UPF2	88	95.208	Equus_asinus_asinus
ENSEEUG00000007819	UPF2	82	95.208	ENSECAG00000017022	UPF2	82	95.208	Equus_caballus
ENSEEUG00000007819	UPF2	76	78.662	ENSELUG00000012014	UPF2	82	78.505	Esox_lucius
ENSEEUG00000007819	UPF2	82	96.685	ENSFCAG00000005785	UPF2	82	94.888	Felis_catus
ENSEEUG00000007819	UPF2	82	91.054	ENSFALG00000001889	UPF2	80	91.054	Ficedula_albicollis
ENSEEUG00000007819	UPF2	82	92.013	ENSFDAG00000014348	UPF2	82	92.332	Fukomys_damarensis
ENSEEUG00000007819	UPF2	70	84.500	ENSFHEG00000009826	UPF2	81	73.585	Fundulus_heteroclitus
ENSEEUG00000007819	UPF2	68	86.096	ENSGMOG00000005557	UPF2	76	73.955	Gadus_morhua
ENSEEUG00000007819	UPF2	77	91.374	ENSGALG00000033772	UPF2	82	91.374	Gallus_gallus
ENSEEUG00000007819	UPF2	69	84.772	ENSGAFG00000020867	UPF2	82	74.528	Gambusia_affinis
ENSEEUG00000007819	UPF2	68	87.139	ENSGACG00000001080	UPF2	82	74.441	Gasterosteus_aculeatus
ENSEEUG00000007819	UPF2	82	92.652	ENSGAGG00000002700	UPF2	82	92.652	Gopherus_agassizii
ENSEEUG00000007819	UPF2	82	95.208	ENSGGOG00000001479	UPF2	82	95.208	Gorilla_gorilla
ENSEEUG00000007819	UPF2	74	75.441	ENSHBUG00000004249	UPF2	82	75.000	Haplochromis_burtoni
ENSEEUG00000007819	UPF2	82	88.782	ENSHGLG00000003822	-	82	88.141	Heterocephalus_glaber_female
ENSEEUG00000007819	UPF2	82	94.888	ENSHGLG00000015176	-	82	94.888	Heterocephalus_glaber_female
ENSEEUG00000007819	UPF2	82	93.891	ENSHGLG00100010036	UPF2	81	91.961	Heterocephalus_glaber_male
ENSEEUG00000007819	UPF2	74	73.885	ENSHCOG00000004025	UPF2	81	75.796	Hippocampus_comes
ENSEEUG00000007819	UPF2	74	75.157	ENSIPUG00000015524	UPF2	82	75.079	Ictalurus_punctatus
ENSEEUG00000007819	UPF2	82	92.971	ENSSTOG00000013075	UPF2	82	93.291	Ictidomys_tridecemlineatus
ENSEEUG00000007819	UPF2	82	90.096	ENSJJAG00000004913	Upf2	82	90.096	Jaculus_jaculus
ENSEEUG00000007819	UPF2	74	74.798	ENSKMAG00000001071	UPF2	77	74.375	Kryptolebias_marmoratus
ENSEEUG00000007819	UPF2	74	75.851	ENSLBEG00000016394	-	81	75.312	Labrus_bergylta
ENSEEUG00000007819	UPF2	73	77.578	ENSLACG00000015945	UPF2	82	77.215	Latimeria_chalumnae
ENSEEUG00000007819	UPF2	69	88.021	ENSLOCG00000015698	UPF2	80	80.818	Lepisosteus_oculatus
ENSEEUG00000007819	UPF2	82	95.208	ENSMFAG00000043865	UPF2	82	95.208	Macaca_fascicularis
ENSEEUG00000007819	UPF2	82	95.208	ENSMMUG00000008241	UPF2	82	95.208	Macaca_mulatta
ENSEEUG00000007819	UPF2	62	84.848	ENSMNEG00000008062	UPF2	77	88.710	Macaca_nemestrina
ENSEEUG00000007819	UPF2	82	95.208	ENSMLEG00000036120	UPF2	86	95.208	Mandrillus_leucophaeus
ENSEEUG00000007819	UPF2	74	74.960	ENSMAMG00000018276	UPF2	82	75.000	Mastacembelus_armatus
ENSEEUG00000007819	UPF2	74	75.441	ENSMZEG00005021595	UPF2	82	75.157	Maylandia_zebra
ENSEEUG00000007819	UPF2	77	91.026	ENSMGAG00000004573	UPF2	78	91.026	Meleagris_gallopavo
ENSEEUG00000007819	UPF2	82	92.332	ENSMAUG00000016512	Upf2	81	92.652	Mesocricetus_auratus
ENSEEUG00000007819	UPF2	77	96.939	ENSMICG00000001716	UPF2	80	96.923	Microcebus_murinus
ENSEEUG00000007819	UPF2	82	91.054	ENSMOCG00000008263	Upf2	82	91.693	Microtus_ochrogaster
ENSEEUG00000007819	UPF2	72	74.333	ENSMMOG00000006528	UPF2	81	70.370	Mola_mola
ENSEEUG00000007819	UPF2	82	93.930	ENSMODG00000016794	UPF2	82	93.930	Monodelphis_domestica
ENSEEUG00000007819	UPF2	74	75.120	ENSMALG00000002663	UPF2	82	73.163	Monopterus_albus
ENSEEUG00000007819	UPF2	82	92.013	MGP_CAROLIEiJ_G0023157	Upf2	82	92.332	Mus_caroli
ENSEEUG00000007819	UPF2	82	91.374	ENSMUSG00000043241	Upf2	82	91.693	Mus_musculus
ENSEEUG00000007819	UPF2	82	91.374	MGP_PahariEiJ_G0019217	Upf2	82	91.374	Mus_pahari
ENSEEUG00000007819	UPF2	82	91.374	MGP_SPRETEiJ_G0024075	Upf2	82	91.693	Mus_spretus
ENSEEUG00000007819	UPF2	82	95.208	ENSMPUG00000001064	UPF2	82	95.208	Mustela_putorius_furo
ENSEEUG00000007819	UPF2	77	94.534	ENSMLUG00000000228	UPF2	82	94.534	Myotis_lucifugus
ENSEEUG00000007819	UPF2	74	75.441	ENSNBRG00000013629	UPF2	82	75.157	Neolamprologus_brichardi
ENSEEUG00000007819	UPF2	82	94.888	ENSNLEG00000012058	UPF2	82	94.888	Nomascus_leucogenys
ENSEEUG00000007819	UPF2	70	93.226	ENSOPRG00000006801	-	70	93.226	Ochotona_princeps
ENSEEUG00000007819	UPF2	82	93.291	ENSODEG00000001290	UPF2	82	93.291	Octodon_degus
ENSEEUG00000007819	UPF2	74	75.441	ENSONIG00000017991	UPF2	82	75.472	Oreochromis_niloticus
ENSEEUG00000007819	UPF2	82	94.212	ENSOCUG00000006230	UPF2	82	94.212	Oryctolagus_cuniculus
ENSEEUG00000007819	UPF2	74	74.799	ENSORLG00000017189	UPF2	82	74.295	Oryzias_latipes
ENSEEUG00000007819	UPF2	74	74.639	ENSORLG00020005969	UPF2	82	74.608	Oryzias_latipes_hni
ENSEEUG00000007819	UPF2	74	74.639	ENSORLG00015005713	UPF2	82	74.608	Oryzias_latipes_hsok
ENSEEUG00000007819	UPF2	74	75.281	ENSOMEG00000023420	UPF2	83	75.000	Oryzias_melastigma
ENSEEUG00000007819	UPF2	82	94.249	ENSOGAG00000005796	UPF2	82	94.249	Otolemur_garnettii
ENSEEUG00000007819	UPF2	82	94.603	ENSOARG00000014587	UPF2	82	94.603	Ovis_aries
ENSEEUG00000007819	UPF2	82	81.875	ENSPPAG00000037953	UPF2	82	84.566	Pan_paniscus
ENSEEUG00000007819	UPF2	82	94.888	ENSPPRG00000000690	UPF2	82	94.888	Panthera_pardus
ENSEEUG00000007819	UPF2	82	94.888	ENSPTIG00000008867	UPF2	82	94.888	Panthera_tigris_altaica
ENSEEUG00000007819	UPF2	82	95.208	ENSPTRG00000002291	UPF2	82	95.208	Pan_troglodytes
ENSEEUG00000007819	UPF2	82	95.208	ENSPANG00000023399	UPF2	82	95.208	Papio_anubis
ENSEEUG00000007819	UPF2	68	86.352	ENSPKIG00000025502	UPF2	82	76.101	Paramormyrops_kingsleyae
ENSEEUG00000007819	UPF2	57	78.680	ENSPSIG00000015158	UPF2	92	78.680	Pelodiscus_sinensis
ENSEEUG00000007819	UPF2	70	84.596	ENSPMGG00000005259	UPF2	82	75.080	Periophthalmus_magnuspinnatus
ENSEEUG00000007819	UPF2	68	88.047	ENSPEMG00000015731	Upf2	77	88.047	Peromyscus_maniculatus_bairdii
ENSEEUG00000007819	UPF2	82	93.291	ENSPCIG00000006656	UPF2	82	93.291	Phascolarctos_cinereus
ENSEEUG00000007819	UPF2	69	84.772	ENSPFOG00000017118	UPF2	82	74.214	Poecilia_formosa
ENSEEUG00000007819	UPF2	69	84.772	ENSPLAG00000005094	UPF2	82	74.214	Poecilia_latipinna
ENSEEUG00000007819	UPF2	69	84.772	ENSPMEG00000017009	UPF2	82	74.214	Poecilia_mexicana
ENSEEUG00000007819	UPF2	69	85.279	ENSPREG00000021880	UPF2	82	74.441	Poecilia_reticulata
ENSEEUG00000007819	UPF2	82	93.930	ENSPCAG00000000684	UPF2	82	93.930	Procavia_capensis
ENSEEUG00000007819	UPF2	82	81.994	ENSPCOG00000021656	UPF2	81	81.155	Propithecus_coquereli
ENSEEUG00000007819	UPF2	70	100.000	ENSPVAG00000017286	UPF2	70	100.000	Pteropus_vampyrus
ENSEEUG00000007819	UPF2	69	89.744	ENSPNYG00000017096	UPF2	78	89.744	Pundamilia_nyererei
ENSEEUG00000007819	UPF2	70	85.459	ENSPNAG00000009357	UPF2	82	76.415	Pygocentrus_nattereri
ENSEEUG00000007819	UPF2	77	91.200	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSEEUG00000007819	UPF2	82	93.248	ENSRBIG00000037780	UPF2	82	93.569	Rhinopithecus_bieti
ENSEEUG00000007819	UPF2	82	93.291	ENSRROG00000043547	UPF2	82	93.610	Rhinopithecus_roxellana
ENSEEUG00000007819	UPF2	82	92.971	ENSSBOG00000020012	UPF2	82	93.291	Saimiri_boliviensis_boliviensis
ENSEEUG00000007819	UPF2	73	76.730	ENSSFOG00015023788	upf2	82	76.415	Scleropages_formosus
ENSEEUG00000007819	UPF2	67	86.777	ENSSMAG00000007637	UPF2	82	74.295	Scophthalmus_maximus
ENSEEUG00000007819	UPF2	69	87.565	ENSSDUG00000017244	UPF2	81	74.528	Seriola_dumerili
ENSEEUG00000007819	UPF2	69	87.565	ENSSLDG00000016866	UPF2	63	71.056	Seriola_lalandi_dorsalis
ENSEEUG00000007819	UPF2	76	92.971	ENSSARG00000008615	UPF2	77	92.971	Sorex_araneus
ENSEEUG00000007819	UPF2	82	91.346	ENSSPUG00000014544	UPF2	80	91.346	Sphenodon_punctatus
ENSEEUG00000007819	UPF2	50	95.208	ENSSSCG00000011117	-	72	100.000	Sus_scrofa
ENSEEUG00000007819	UPF2	81	90.968	ENSTGUG00000002163	-	82	90.968	Taeniopygia_guttata
ENSEEUG00000007819	UPF2	74	74.281	ENSTRUG00000007519	UPF2	81	74.062	Takifugu_rubripes
ENSEEUG00000007819	UPF2	77	72.534	ENSTNIG00000004453	UPF2	81	72.360	Tetraodon_nigroviridis
ENSEEUG00000007819	UPF2	74	92.237	ENSTBEG00000012679	UPF2	74	92.694	Tupaia_belangeri
ENSEEUG00000007819	UPF2	82	95.208	ENSTTRG00000016388	UPF2	82	95.208	Tursiops_truncatus
ENSEEUG00000007819	UPF2	73	96.528	ENSUAMG00000023560	UPF2	78	100.000	Ursus_americanus
ENSEEUG00000007819	UPF2	82	95.527	ENSUMAG00000012953	UPF2	78	95.527	Ursus_maritimus
ENSEEUG00000007819	UPF2	66	96.774	ENSVPAG00000006763	UPF2	67	96.774	Vicugna_pacos
ENSEEUG00000007819	UPF2	82	95.208	ENSVVUG00000006166	UPF2	82	95.208	Vulpes_vulpes
ENSEEUG00000007819	UPF2	82	76.730	ENSXETG00000033103	UPF2	71	89.888	Xenopus_tropicalis
ENSEEUG00000007819	UPF2	68	86.387	ENSXCOG00000011604	UPF2	82	74.051	Xiphophorus_couchianus
ENSEEUG00000007819	UPF2	69	85.025	ENSXMAG00000017209	UPF2	82	74.214	Xiphophorus_maculatus