EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000011323 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 124034 bases
Position: chrGeneScaffold_2442:2946-126979
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000010422	XRN_N	PF03159.18	4.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000011425	XRN1-201	5094	-	ENSEEUP00000010422	1697 (aa)	-	UPI0000F64360

Gene Model

Click here to download ENSEEUG00000011323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000011323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000011323	XRN1	92	82.600	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSEEUG00000011323	XRN1	89	79.613	ENSAPOG00000000622	xrn1	93	76.660	Acanthochromis_polyacanthus
ENSEEUG00000011323	XRN1	92	82.943	ENSAMEG00000012538	XRN1	92	82.943	Ailuropoda_melanoleuca
ENSEEUG00000011323	XRN1	87	65.336	ENSACIG00000001057	xrn1	90	65.336	Amphilophus_citrinellus
ENSEEUG00000011323	XRN1	78	81.404	ENSAOCG00000014097	xrn1	95	69.899	Amphiprion_ocellaris
ENSEEUG00000011323	XRN1	92	65.396	ENSAPEG00000006620	xrn1	89	81.579	Amphiprion_percula
ENSEEUG00000011323	XRN1	81	78.534	ENSATEG00000009752	xrn1	84	78.534	Anabas_testudineus
ENSEEUG00000011323	XRN1	91	75.301	ENSAPLG00000004905	XRN1	92	74.975	Anas_platyrhynchos
ENSEEUG00000011323	XRN1	92	74.121	ENSACAG00000004985	XRN1	89	74.023	Anolis_carolinensis
ENSEEUG00000011323	XRN1	92	83.187	ENSANAG00000029013	XRN1	92	83.187	Aotus_nancymaae
ENSEEUG00000011323	XRN1	85	65.336	ENSACLG00000004806	xrn1	92	65.336	Astatotilapia_calliptera
ENSEEUG00000011323	XRN1	83	76.573	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSEEUG00000011323	XRN1	92	82.893	ENSBTAG00000011524	XRN1	92	82.893	Bos_taurus
ENSEEUG00000011323	XRN1	92	83.187	ENSCJAG00000001872	XRN1	92	83.187	Callithrix_jacchus
ENSEEUG00000011323	XRN1	92	83.187	ENSCAFG00000007783	XRN1	92	83.187	Canis_familiaris
ENSEEUG00000011323	XRN1	92	83.187	ENSCAFG00020009120	XRN1	84	93.870	Canis_lupus_dingo
ENSEEUG00000011323	XRN1	92	83.089	ENSCHIG00000019192	XRN1	92	83.089	Capra_hircus
ENSEEUG00000011323	XRN1	92	82.991	ENSTSYG00000002705	XRN1	92	82.991	Carlito_syrichta
ENSEEUG00000011323	XRN1	92	83.382	ENSCCAG00000034800	XRN1	84	97.548	Cebus_capucinus
ENSEEUG00000011323	XRN1	92	83.382	ENSCATG00000041794	XRN1	92	83.382	Cercocebus_atys
ENSEEUG00000011323	XRN1	92	82.502	ENSCLAG00000001451	XRN1	84	96.848	Chinchilla_lanigera
ENSEEUG00000011323	XRN1	92	83.480	ENSCSAG00000011265	XRN1	92	83.480	Chlorocebus_sabaeus
ENSEEUG00000011323	XRN1	57	98.701	ENSCHOG00000013961	-	58	98.701	Choloepus_hoffmanni
ENSEEUG00000011323	XRN1	53	62.676	ENSCSAVG00000008584	-	70	61.285	Ciona_savignyi
ENSEEUG00000011323	XRN1	92	83.382	ENSCANG00000037495	XRN1	84	97.898	Colobus_angolensis_palliatus
ENSEEUG00000011323	XRN1	92	82.014	ENSCGRG00001019411	Xrn1	84	95.797	Cricetulus_griseus_chok1gshd
ENSEEUG00000011323	XRN1	92	82.014	ENSCGRG00000012464	Xrn1	84	95.797	Cricetulus_griseus_crigri
ENSEEUG00000011323	XRN1	86	64.712	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSEEUG00000011323	XRN1	51	79.613	ENSCVAG00000013089	xrn1	75	79.086	Cyprinodon_variegatus
ENSEEUG00000011323	XRN1	89	82.723	ENSDARG00000091652	xrn1	98	79.493	Danio_rerio
ENSEEUG00000011323	XRN1	92	81.623	ENSDORG00000013833	Xrn1	92	81.623	Dipodomys_ordii
ENSEEUG00000011323	XRN1	81	100.000	ENSETEG00000003978	XRN1	82	100.000	Echinops_telfairi
ENSEEUG00000011323	XRN1	92	82.307	ENSEASG00005002687	XRN1	84	96.322	Equus_asinus_asinus
ENSEEUG00000011323	XRN1	92	82.405	ENSECAG00000008301	XRN1	92	82.405	Equus_caballus
ENSEEUG00000011323	XRN1	90	66.084	ENSELUG00000000169	xrn1	92	65.986	Esox_lucius
ENSEEUG00000011323	XRN1	92	75.781	ENSFCAG00000027589	XRN1	99	95.415	Felis_catus
ENSEEUG00000011323	XRN1	92	75.122	ENSFALG00000007021	XRN1	89	75.122	Ficedula_albicollis
ENSEEUG00000011323	XRN1	92	82.209	ENSFDAG00000020494	XRN1	84	95.972	Fukomys_damarensis
ENSEEUG00000011323	XRN1	75	63.014	ENSGMOG00000006396	xrn1	73	71.429	Gadus_morhua
ENSEEUG00000011323	XRN1	90	75.855	ENSGALG00000002706	XRN1	89	75.538	Gallus_gallus
ENSEEUG00000011323	XRN1	87	64.516	ENSGACG00000014328	xrn1	86	64.516	Gasterosteus_aculeatus
ENSEEUG00000011323	XRN1	87	75.464	ENSGAGG00000017535	XRN1	92	75.464	Gopherus_agassizii
ENSEEUG00000011323	XRN1	92	82.502	ENSGGOG00000008047	XRN1	92	82.502	Gorilla_gorilla
ENSEEUG00000011323	XRN1	92	63.875	ENSHBUG00000005908	xrn1	95	74.630	Haplochromis_burtoni
ENSEEUG00000011323	XRN1	92	83.187	ENSHGLG00000014476	XRN1	84	97.023	Heterocephalus_glaber_female
ENSEEUG00000011323	XRN1	92	83.187	ENSHGLG00100015130	XRN1	84	97.023	Heterocephalus_glaber_male
ENSEEUG00000011323	XRN1	76	65.407	ENSHCOG00000014062	xrn1	81	65.407	Hippocampus_comes
ENSEEUG00000011323	XRN1	86	73.234	ENSIPUG00000015229	xrn1	86	73.234	Ictalurus_punctatus
ENSEEUG00000011323	XRN1	92	83.187	ENSSTOG00000013552	XRN1	84	97.023	Ictidomys_tridecemlineatus
ENSEEUG00000011323	XRN1	91	82.046	ENSJJAG00000010863	Xrn1	84	95.421	Jaculus_jaculus
ENSEEUG00000011323	XRN1	81	71.078	ENSKMAG00000021356	xrn1	93	76.445	Kryptolebias_marmoratus
ENSEEUG00000011323	XRN1	85	65.166	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSEEUG00000011323	XRN1	92	71.624	ENSLACG00000009020	XRN1	92	71.624	Latimeria_chalumnae
ENSEEUG00000011323	XRN1	92	68.652	ENSLOCG00000007944	xrn1	92	68.652	Lepisosteus_oculatus
ENSEEUG00000011323	XRN1	60	82.893	ENSLAFG00000015426	XRN1	96	82.893	Loxodonta_africana
ENSEEUG00000011323	XRN1	92	83.382	ENSMFAG00000032599	XRN1	92	83.382	Macaca_fascicularis
ENSEEUG00000011323	XRN1	92	83.382	ENSMMUG00000014038	XRN1	92	83.382	Macaca_mulatta
ENSEEUG00000011323	XRN1	92	83.187	ENSMNEG00000034217	XRN1	92	83.187	Macaca_nemestrina
ENSEEUG00000011323	XRN1	85	65.789	ENSMAMG00000013219	xrn1	92	78.436	Mastacembelus_armatus
ENSEEUG00000011323	XRN1	85	65.336	ENSMZEG00005015099	xrn1	92	65.336	Maylandia_zebra
ENSEEUG00000011323	XRN1	91	73.100	ENSMGAG00000006333	XRN1	92	72.773	Meleagris_gallopavo
ENSEEUG00000011323	XRN1	92	82.796	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSEEUG00000011323	XRN1	92	79.179	ENSMODG00000021236	XRN1	92	78.669	Monodelphis_domestica
ENSEEUG00000011323	XRN1	87	67.725	ENSMALG00000004098	xrn1	86	67.725	Monopterus_albus
ENSEEUG00000011323	XRN1	85	95.096	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSEEUG00000011323	XRN1	92	81.134	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSEEUG00000011323	XRN1	92	81.525	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSEEUG00000011323	XRN1	92	81.427	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSEEUG00000011323	XRN1	92	83.268	ENSMPUG00000012040	XRN1	92	83.268	Mustela_putorius_furo
ENSEEUG00000011323	XRN1	92	82.502	ENSMLUG00000016885	XRN1	92	82.502	Myotis_lucifugus
ENSEEUG00000011323	XRN1	92	83.089	ENSNLEG00000004726	XRN1	92	83.089	Nomascus_leucogenys
ENSEEUG00000011323	XRN1	60	98.969	ENSMEUG00000014473	-	61	99.029	Notamacropus_eugenii
ENSEEUG00000011323	XRN1	69	89.603	ENSOPRG00000007337	-	69	89.603	Ochotona_princeps
ENSEEUG00000011323	XRN1	92	65.789	ENSONIG00000016673	xrn1	92	65.789	Oreochromis_niloticus
ENSEEUG00000011323	XRN1	84	74.550	ENSOANG00000006735	XRN1	92	74.070	Ornithorhynchus_anatinus
ENSEEUG00000011323	XRN1	92	83.252	ENSOCUG00000001861	XRN1	92	83.252	Oryctolagus_cuniculus
ENSEEUG00000011323	XRN1	92	66.244	ENSORLG00000013005	xrn1	92	65.756	Oryzias_latipes
ENSEEUG00000011323	XRN1	92	66.244	ENSORLG00020005559	xrn1	83	81.818	Oryzias_latipes_hni
ENSEEUG00000011323	XRN1	89	81.469	ENSORLG00015022523	xrn1	89	81.469	Oryzias_latipes_hsok
ENSEEUG00000011323	XRN1	92	65.591	ENSOMEG00000015397	xrn1	92	65.591	Oryzias_melastigma
ENSEEUG00000011323	XRN1	92	79.863	ENSOGAG00000000170	XRN1	92	79.863	Otolemur_garnettii
ENSEEUG00000011323	XRN1	92	83.187	ENSOARG00000006343	XRN1	92	83.187	Ovis_aries
ENSEEUG00000011323	XRN1	92	82.600	ENSPPAG00000010180	XRN1	92	82.600	Pan_paniscus
ENSEEUG00000011323	XRN1	92	83.203	ENSPPRG00000007125	XRN1	92	83.203	Panthera_pardus
ENSEEUG00000011323	XRN1	92	83.203	ENSPTIG00000021081	XRN1	92	83.203	Panthera_tigris_altaica
ENSEEUG00000011323	XRN1	92	82.600	ENSPTRG00000015482	XRN1	92	82.600	Pan_troglodytes
ENSEEUG00000011323	XRN1	92	83.382	ENSPANG00000010638	XRN1	92	83.382	Papio_anubis
ENSEEUG00000011323	XRN1	92	75.415	ENSPSIG00000018050	XRN1	92	75.415	Pelodiscus_sinensis
ENSEEUG00000011323	XRN1	92	79.277	ENSPCIG00000028735	XRN1	84	91.579	Phascolarctos_cinereus
ENSEEUG00000011323	XRN1	73	79.110	ENSPFOG00000013932	xrn1	80	79.110	Poecilia_formosa
ENSEEUG00000011323	XRN1	69	71.739	ENSPLAG00000021653	xrn1	84	72.011	Poecilia_latipinna
ENSEEUG00000011323	XRN1	58	71.177	ENSPMEG00000003076	xrn1	78	71.409	Poecilia_mexicana
ENSEEUG00000011323	XRN1	87	70.899	ENSPREG00000021147	xrn1	86	71.216	Poecilia_reticulata
ENSEEUG00000011323	XRN1	92	82.796	ENSPPYG00000014172	XRN1	92	82.796	Pongo_abelii
ENSEEUG00000011323	XRN1	79	86.861	ENSPCAG00000005638	XRN1	87	86.861	Procavia_capensis
ENSEEUG00000011323	XRN1	92	83.089	ENSPCOG00000013089	XRN1	84	96.673	Propithecus_coquereli
ENSEEUG00000011323	XRN1	80	78.376	ENSPVAG00000016265	XRN1	80	78.916	Pteropus_vampyrus
ENSEEUG00000011323	XRN1	85	65.175	ENSPNYG00000010570	xrn1	92	65.141	Pundamilia_nyererei
ENSEEUG00000011323	XRN1	84	76.316	ENSPNAG00000023531	xrn1	85	75.974	Pygocentrus_nattereri
ENSEEUG00000011323	XRN1	92	81.232	ENSRNOG00000042951	Xrn1	92	81.232	Rattus_norvegicus
ENSEEUG00000011323	XRN1	92	82.991	ENSRBIG00000041227	XRN1	92	82.991	Rhinopithecus_bieti
ENSEEUG00000011323	XRN1	92	83.187	ENSSBOG00000029561	XRN1	92	83.187	Saimiri_boliviensis_boliviensis
ENSEEUG00000011323	XRN1	91	78.557	ENSSHAG00000016207	XRN1	92	78.034	Sarcophilus_harrisii
ENSEEUG00000011323	XRN1	86	66.797	ENSSFOG00015024211	xrn1	92	66.797	Scleropages_formosus
ENSEEUG00000011323	XRN1	84	82.024	ENSSMAG00000016534	xrn1	84	82.024	Scophthalmus_maximus
ENSEEUG00000011323	XRN1	77	72.456	ENSSDUG00000010306	xrn1	82	72.456	Seriola_dumerili
ENSEEUG00000011323	XRN1	81	72.592	ENSSLDG00000021543	xrn1	86	72.592	Seriola_lalandi_dorsalis
ENSEEUG00000011323	XRN1	63	84.866	ENSSARG00000007741	-	77	84.866	Sorex_araneus
ENSEEUG00000011323	XRN1	92	75.122	ENSTGUG00000008498	XRN1	92	75.122	Taeniopygia_guttata
ENSEEUG00000011323	XRN1	83	81.019	ENSTRUG00000004895	xrn1	96	77.897	Takifugu_rubripes
ENSEEUG00000011323	XRN1	89	79.930	ENSTNIG00000017615	xrn1	88	79.930	Tetraodon_nigroviridis
ENSEEUG00000011323	XRN1	70	97.354	ENSTBEG00000003256	XRN1	69	97.354	Tupaia_belangeri
ENSEEUG00000011323	XRN1	92	80.841	ENSTTRG00000012914	XRN1	92	80.841	Tursiops_truncatus
ENSEEUG00000011323	XRN1	92	80.254	ENSUAMG00000001608	XRN1	89	88.406	Ursus_americanus
ENSEEUG00000011323	XRN1	92	83.382	ENSUMAG00000013625	XRN1	92	83.382	Ursus_maritimus
ENSEEUG00000011323	XRN1	92	82.975	ENSVPAG00000004690	XRN1	93	82.975	Vicugna_pacos
ENSEEUG00000011323	XRN1	92	83.480	ENSVVUG00000024461	XRN1	99	94.218	Vulpes_vulpes
ENSEEUG00000011323	XRN1	92	70.674	ENSXETG00000000619	xrn1	97	88.710	Xenopus_tropicalis
ENSEEUG00000011323	XRN1	87	71.623	ENSXCOG00000007917	xrn1	86	71.623	Xiphophorus_couchianus
ENSEEUG00000011323	XRN1	79	71.078	ENSXMAG00000018320	xrn1	83	71.078	Xiphophorus_maculatus