EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000012690 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 29601 bases
Position: chrGeneScaffold_8599:41891-71491
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000011595	EST1	PF10374.9	3.8e-24	1	1
ENSEEUP00000011595	EST1_DNA_bind	PF10373.9	7.2e-34	1	2
ENSEEUP00000011595	EST1_DNA_bind	PF10373.9	7.2e-34	2	2
ENSEEUP00000011595	PIN_4	PF13638.6	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000012725	SMG5-201	2976	-	ENSEEUP00000011595	991 (aa)	-	UPI0000F62C36

Gene Model

Click here to download ENSEEUG00000012690's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000012690's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000012690	SMG5	73	98.271	ENSG00000198952	SMG5	72	98.271	Homo_sapiens
ENSEEUG00000012690	SMG5	75	79.827	ENSAPOG00000019690	smg5	73	79.827	Acanthochromis_polyacanthus
ENSEEUG00000012690	SMG5	73	94.813	ENSAMEG00000014458	SMG5	74	94.813	Ailuropoda_melanoleuca
ENSEEUG00000012690	SMG5	75	78.187	ENSACIG00000001353	smg5	72	79.037	Amphilophus_citrinellus
ENSEEUG00000012690	SMG5	75	79.096	ENSAOCG00000019483	smg5	68	79.096	Amphiprion_ocellaris
ENSEEUG00000012690	SMG5	75	78.814	ENSAPEG00000022949	smg5	74	78.814	Amphiprion_percula
ENSEEUG00000012690	SMG5	75	78.187	ENSATEG00000005348	smg5	72	78.754	Anabas_testudineus
ENSEEUG00000012690	SMG5	75	95.101	ENSAPLG00000010263	SMG5	71	95.101	Anas_platyrhynchos
ENSEEUG00000012690	SMG5	73	98.271	ENSANAG00000032899	SMG5	73	98.271	Aotus_nancymaae
ENSEEUG00000012690	SMG5	75	77.465	ENSACLG00000009311	smg5	73	78.814	Astatotilapia_calliptera
ENSEEUG00000012690	SMG5	75	79.598	ENSAMXG00000024616	smg5	67	79.598	Astyanax_mexicanus
ENSEEUG00000012690	SMG5	74	56.322	ENSBTAG00000021747	-	72	56.322	Bos_taurus
ENSEEUG00000012690	SMG5	75	99.135	ENSBTAG00000009435	SMG5	73	99.135	Bos_taurus
ENSEEUG00000012690	SMG5	73	98.271	ENSCJAG00000005684	SMG5	72	98.271	Callithrix_jacchus
ENSEEUG00000012690	SMG5	73	97.118	ENSCAFG00000016839	SMG5	72	97.118	Canis_familiaris
ENSEEUG00000012690	SMG5	73	97.118	ENSCAFG00020006061	SMG5	72	97.118	Canis_lupus_dingo
ENSEEUG00000012690	SMG5	73	56.609	ENSCHIG00000006323	-	73	56.609	Capra_hircus
ENSEEUG00000012690	SMG5	73	99.135	ENSCHIG00000007709	SMG5	72	99.135	Capra_hircus
ENSEEUG00000012690	SMG5	73	98.559	ENSTSYG00000004099	SMG5	72	98.559	Carlito_syrichta
ENSEEUG00000012690	SMG5	65	83.990	ENSCAPG00000003631	SMG5	66	84.334	Cavia_aperea
ENSEEUG00000012690	SMG5	73	96.830	ENSCPOG00000015696	SMG5	72	96.830	Cavia_porcellus
ENSEEUG00000012690	SMG5	73	98.271	ENSCCAG00000027409	SMG5	73	98.271	Cebus_capucinus
ENSEEUG00000012690	SMG5	73	98.559	ENSCATG00000030539	SMG5	72	98.559	Cercocebus_atys
ENSEEUG00000012690	SMG5	73	97.695	ENSCLAG00000003983	SMG5	72	97.695	Chinchilla_lanigera
ENSEEUG00000012690	SMG5	73	98.559	ENSCSAG00000002120	SMG5	72	98.559	Chlorocebus_sabaeus
ENSEEUG00000012690	SMG5	71	95.098	ENSCPBG00000025848	SMG5	70	95.098	Chrysemys_picta_bellii
ENSEEUG00000012690	SMG5	66	38.720	ENSCING00000008706	-	70	38.720	Ciona_intestinalis
ENSEEUG00000012690	SMG5	75	97.695	ENSCANG00000029208	SMG5	72	97.695	Colobus_angolensis_palliatus
ENSEEUG00000012690	SMG5	73	96.542	ENSCGRG00001006336	Smg5	72	96.542	Cricetulus_griseus_chok1gshd
ENSEEUG00000012690	SMG5	73	96.542	ENSCGRG00000005111	Smg5	74	96.542	Cricetulus_griseus_crigri
ENSEEUG00000012690	SMG5	75	78.754	ENSCSEG00000014220	smg5	72	78.754	Cynoglossus_semilaevis
ENSEEUG00000012690	SMG5	75	65.482	ENSCVAG00000000529	smg5	73	65.796	Cyprinodon_variegatus
ENSEEUG00000012690	SMG5	75	80.747	ENSDARG00000041481	smg5	66	80.747	Danio_rerio
ENSEEUG00000012690	SMG5	74	98.271	ENSDNOG00000000051	SMG5	72	98.271	Dasypus_novemcinctus
ENSEEUG00000012690	SMG5	70	41.867	ENSDNOG00000039862	-	74	41.867	Dasypus_novemcinctus
ENSEEUG00000012690	SMG5	73	98.559	ENSDORG00000010382	Smg5	72	98.559	Dipodomys_ordii
ENSEEUG00000012690	SMG5	59	30.500	FBgn0019890	Smg5	55	30.500	Drosophila_melanogaster
ENSEEUG00000012690	SMG5	51	96.830	ENSETEG00000010336	SMG5	54	96.830	Echinops_telfairi
ENSEEUG00000012690	SMG5	66	54.802	ENSEBUG00000003739	smg5	70	54.802	Eptatretus_burgeri
ENSEEUG00000012690	SMG5	73	98.847	ENSEASG00005019122	SMG5	72	98.847	Equus_asinus_asinus
ENSEEUG00000012690	SMG5	73	98.847	ENSECAG00000001389	SMG5	72	98.847	Equus_caballus
ENSEEUG00000012690	SMG5	75	79.487	ENSELUG00000012585	smg5	73	79.772	Esox_lucius
ENSEEUG00000012690	SMG5	73	97.118	ENSFCAG00000011783	SMG5	72	97.118	Felis_catus
ENSEEUG00000012690	SMG5	73	97.406	ENSFDAG00000017388	SMG5	74	97.406	Fukomys_damarensis
ENSEEUG00000012690	SMG5	66	75.581	ENSFHEG00000013939	smg5	71	76.163	Fundulus_heteroclitus
ENSEEUG00000012690	SMG5	75	75.068	ENSGMOG00000007310	smg5	66	76.712	Gadus_morhua
ENSEEUG00000012690	SMG5	75	93.372	ENSGALG00000029918	-	70	93.372	Gallus_gallus
ENSEEUG00000012690	SMG5	67	78.249	ENSGAFG00000021691	smg5	64	79.155	Gambusia_affinis
ENSEEUG00000012690	SMG5	75	77.809	ENSGACG00000013142	smg5	67	77.809	Gasterosteus_aculeatus
ENSEEUG00000012690	SMG5	75	95.389	ENSGAGG00000016131	SMG5	69	95.389	Gopherus_agassizii
ENSEEUG00000012690	SMG5	73	98.271	ENSGGOG00000010932	SMG5	72	98.271	Gorilla_gorilla
ENSEEUG00000012690	SMG5	75	77.465	ENSHBUG00000008654	smg5	72	78.814	Haplochromis_burtoni
ENSEEUG00000012690	SMG5	73	96.254	ENSHGLG00000019152	SMG5	72	96.254	Heterocephalus_glaber_female
ENSEEUG00000012690	SMG5	63	95.965	ENSHGLG00100015948	SMG5	69	95.965	Heterocephalus_glaber_male
ENSEEUG00000012690	SMG5	66	74.138	ENSHCOG00000010229	smg5	72	73.851	Hippocampus_comes
ENSEEUG00000012690	SMG5	75	80.172	ENSIPUG00000006624	Smg5	67	80.172	Ictalurus_punctatus
ENSEEUG00000012690	SMG5	73	98.271	ENSSTOG00000001780	SMG5	72	98.271	Ictidomys_tridecemlineatus
ENSEEUG00000012690	SMG5	74	97.695	ENSJJAG00000022763	Smg5	72	97.695	Jaculus_jaculus
ENSEEUG00000012690	SMG5	75	77.966	ENSKMAG00000014586	smg5	66	79.437	Kryptolebias_marmoratus
ENSEEUG00000012690	SMG5	75	78.187	ENSLBEG00000002145	smg5	75	79.379	Labrus_bergylta
ENSEEUG00000012690	SMG5	74	81.065	ENSLACG00000010521	SMG5	69	81.065	Latimeria_chalumnae
ENSEEUG00000012690	SMG5	75	78.736	ENSLOCG00000008380	smg5	66	78.736	Lepisosteus_oculatus
ENSEEUG00000012690	SMG5	74	98.847	ENSLAFG00000006241	SMG5	72	98.847	Loxodonta_africana
ENSEEUG00000012690	SMG5	73	98.559	ENSMFAG00000045357	SMG5	72	98.559	Macaca_fascicularis
ENSEEUG00000012690	SMG5	73	98.559	ENSMMUG00000000090	SMG5	73	98.559	Macaca_mulatta
ENSEEUG00000012690	SMG5	73	98.559	ENSMNEG00000044425	SMG5	72	98.559	Macaca_nemestrina
ENSEEUG00000012690	SMG5	73	90.130	ENSMLEG00000041192	SMG5	71	90.181	Mandrillus_leucophaeus
ENSEEUG00000012690	SMG5	75	79.320	ENSMAMG00000010683	smg5	66	79.887	Mastacembelus_armatus
ENSEEUG00000012690	SMG5	75	77.465	ENSMZEG00005015815	smg5	72	78.814	Maylandia_zebra
ENSEEUG00000012690	SMG5	73	95.677	ENSMAUG00000010381	Smg5	72	95.677	Mesocricetus_auratus
ENSEEUG00000012690	SMG5	73	98.559	ENSMICG00000002257	SMG5	72	98.559	Microcebus_murinus
ENSEEUG00000012690	SMG5	73	96.830	ENSMOCG00000016590	Smg5	72	96.830	Microtus_ochrogaster
ENSEEUG00000012690	SMG5	75	74.221	ENSMMOG00000017199	smg5	66	74.221	Mola_mola
ENSEEUG00000012690	SMG5	73	38.802	ENSMODG00000004511	-	73	38.583	Monodelphis_domestica
ENSEEUG00000012690	SMG5	73	39.108	ENSMODG00000004735	-	81	39.200	Monodelphis_domestica
ENSEEUG00000012690	SMG5	75	36.776	ENSMODG00000010675	-	81	37.069	Monodelphis_domestica
ENSEEUG00000012690	SMG5	74	39.181	ENSMODG00000004532	-	78	39.181	Monodelphis_domestica
ENSEEUG00000012690	SMG5	62	97.118	ENSMODG00000016901	SMG5	67	97.118	Monodelphis_domestica
ENSEEUG00000012690	SMG5	75	75.843	ENSMALG00000010375	smg5	66	75.843	Monopterus_albus
ENSEEUG00000012690	SMG5	74	96.254	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSEEUG00000012690	SMG5	74	96.254	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSEEUG00000012690	SMG5	74	96.542	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSEEUG00000012690	SMG5	74	96.254	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSEEUG00000012690	SMG5	69	94.771	ENSMPUG00000004546	SMG5	73	94.771	Mustela_putorius_furo
ENSEEUG00000012690	SMG5	74	98.559	ENSMLUG00000008518	SMG5	72	98.559	Myotis_lucifugus
ENSEEUG00000012690	SMG5	73	57.061	ENSNGAG00000012101	-	73	57.061	Nannospalax_galili
ENSEEUG00000012690	SMG5	74	98.271	ENSNGAG00000020706	Smg5	72	98.271	Nannospalax_galili
ENSEEUG00000012690	SMG5	71	77.465	ENSNBRG00000004332	smg5	71	78.814	Neolamprologus_brichardi
ENSEEUG00000012690	SMG5	73	98.271	ENSNLEG00000012439	SMG5	72	98.271	Nomascus_leucogenys
ENSEEUG00000012690	SMG5	75	97.118	ENSMEUG00000012834	SMG5	72	97.118	Notamacropus_eugenii
ENSEEUG00000012690	SMG5	74	98.847	ENSOPRG00000009152	SMG5	72	98.847	Ochotona_princeps
ENSEEUG00000012690	SMG5	73	97.406	ENSODEG00000012237	SMG5	72	97.406	Octodon_degus
ENSEEUG00000012690	SMG5	75	77.465	ENSONIG00000008632	smg5	66	78.814	Oreochromis_niloticus
ENSEEUG00000012690	SMG5	65	51.156	ENSOCUG00000023338	-	70	51.156	Oryctolagus_cuniculus
ENSEEUG00000012690	SMG5	74	98.559	ENSOCUG00000012886	SMG5	74	98.559	Oryctolagus_cuniculus
ENSEEUG00000012690	SMG5	74	76.620	ENSORLG00000016239	smg5	66	77.746	Oryzias_latipes
ENSEEUG00000012690	SMG5	75	76.056	ENSORLG00020013127	smg5	75	77.183	Oryzias_latipes_hni
ENSEEUG00000012690	SMG5	75	76.338	ENSORLG00015019014	smg5	74	77.183	Oryzias_latipes_hsok
ENSEEUG00000012690	SMG5	56	78.409	ENSOMEG00000021330	smg5	55	78.409	Oryzias_melastigma
ENSEEUG00000012690	SMG5	74	97.406	ENSOGAG00000004966	SMG5	72	97.406	Otolemur_garnettii
ENSEEUG00000012690	SMG5	73	56.734	ENSOARG00000011963	-	73	56.734	Ovis_aries
ENSEEUG00000012690	SMG5	73	99.135	ENSOARG00000005778	SMG5	72	99.135	Ovis_aries
ENSEEUG00000012690	SMG5	73	97.695	ENSPPAG00000011996	SMG5	72	97.695	Pan_paniscus
ENSEEUG00000012690	SMG5	73	96.542	ENSPPRG00000011901	SMG5	74	96.542	Panthera_pardus
ENSEEUG00000012690	SMG5	68	93.948	ENSPTIG00000007892	SMG5	73	93.948	Panthera_tigris_altaica
ENSEEUG00000012690	SMG5	73	97.983	ENSPTRG00000023925	SMG5	72	97.983	Pan_troglodytes
ENSEEUG00000012690	SMG5	73	97.983	ENSPTRG00000049282	-	72	97.983	Pan_troglodytes
ENSEEUG00000012690	SMG5	73	98.559	ENSPANG00000011201	SMG5	72	98.559	Papio_anubis
ENSEEUG00000012690	SMG5	75	79.023	ENSPKIG00000009402	smg5	72	77.143	Paramormyrops_kingsleyae
ENSEEUG00000012690	SMG5	75	95.389	ENSPSIG00000015198	SMG5	73	94.842	Pelodiscus_sinensis
ENSEEUG00000012690	SMG5	75	76.353	ENSPMGG00000010465	smg5	67	76.353	Periophthalmus_magnuspinnatus
ENSEEUG00000012690	SMG5	73	96.830	ENSPEMG00000001819	Smg5	72	96.830	Peromyscus_maniculatus_bairdii
ENSEEUG00000012690	SMG5	75	63.324	ENSPMAG00000000410	smg5	72	63.714	Petromyzon_marinus
ENSEEUG00000012690	SMG5	75	97.118	ENSPCIG00000018938	SMG5	72	97.118	Phascolarctos_cinereus
ENSEEUG00000012690	SMG5	74	78.249	ENSPFOG00000010191	smg5	66	79.155	Poecilia_formosa
ENSEEUG00000012690	SMG5	74	78.249	ENSPLAG00000009332	smg5	66	79.155	Poecilia_latipinna
ENSEEUG00000012690	SMG5	74	78.249	ENSPMEG00000014105	smg5	71	79.155	Poecilia_mexicana
ENSEEUG00000012690	SMG5	74	78.249	ENSPREG00000017713	smg5	66	79.155	Poecilia_reticulata
ENSEEUG00000012690	SMG5	73	98.271	ENSPPYG00000000723	SMG5	72	98.271	Pongo_abelii
ENSEEUG00000012690	SMG5	73	99.135	ENSPCOG00000004741	SMG5	72	99.135	Propithecus_coquereli
ENSEEUG00000012690	SMG5	73	91.601	ENSPVAG00000016748	SMG5	72	91.645	Pteropus_vampyrus
ENSEEUG00000012690	SMG5	75	77.183	ENSPNYG00000013397	smg5	65	78.531	Pundamilia_nyererei
ENSEEUG00000012690	SMG5	75	79.310	ENSPNAG00000028363	smg5	67	79.310	Pygocentrus_nattereri
ENSEEUG00000012690	SMG5	73	96.542	ENSRNOG00000019590	Smg5	72	96.542	Rattus_norvegicus
ENSEEUG00000012690	SMG5	73	97.983	ENSRBIG00000027428	SMG5	72	97.983	Rhinopithecus_bieti
ENSEEUG00000012690	SMG5	73	97.983	ENSRROG00000030035	SMG5	72	97.983	Rhinopithecus_roxellana
ENSEEUG00000012690	SMG5	73	98.559	ENSSBOG00000033339	SMG5	72	98.559	Saimiri_boliviensis_boliviensis
ENSEEUG00000012690	SMG5	73	40.751	ENSSHAG00000000561	-	80	40.751	Sarcophilus_harrisii
ENSEEUG00000012690	SMG5	73	43.695	ENSSHAG00000009572	-	72	43.695	Sarcophilus_harrisii
ENSEEUG00000012690	SMG5	75	96.830	ENSSHAG00000014163	SMG5	74	96.830	Sarcophilus_harrisii
ENSEEUG00000012690	SMG5	52	41.040	ENSSHAG00000000935	-	73	41.463	Sarcophilus_harrisii
ENSEEUG00000012690	SMG5	75	79.023	ENSSFOG00015024175	smg5	72	79.023	Scleropages_formosus
ENSEEUG00000012690	SMG5	75	77.465	ENSSMAG00000013059	smg5	66	78.873	Scophthalmus_maximus
ENSEEUG00000012690	SMG5	75	76.536	ENSSDUG00000007122	smg5	66	77.374	Seriola_dumerili
ENSEEUG00000012690	SMG5	75	77.401	ENSSLDG00000011418	smg5	65	78.249	Seriola_lalandi_dorsalis
ENSEEUG00000012690	SMG5	63	92.058	ENSSARG00000012484	SMG5	68	92.058	Sorex_araneus
ENSEEUG00000012690	SMG5	70	94.118	ENSSPUG00000002260	SMG5	70	94.118	Sphenodon_punctatus
ENSEEUG00000012690	SMG5	75	77.591	ENSSPAG00000014266	smg5	72	78.431	Stegastes_partitus
ENSEEUG00000012690	SMG5	75	99.135	ENSSSCG00000006490	-	73	99.020	Sus_scrofa
ENSEEUG00000012690	SMG5	71	77.882	ENSSSCG00000039308	-	73	77.285	Sus_scrofa
ENSEEUG00000012690	SMG5	75	93.983	ENSTGUG00000003748	-	72	93.983	Taeniopygia_guttata
ENSEEUG00000012690	SMG5	75	77.810	ENSTRUG00000012580	smg5	71	77.810	Takifugu_rubripes
ENSEEUG00000012690	SMG5	75	77.810	ENSTNIG00000010303	smg5	71	77.810	Tetraodon_nigroviridis
ENSEEUG00000012690	SMG5	59	100.000	ENSTBEG00000002777	SMG5	57	100.000	Tupaia_belangeri
ENSEEUG00000012690	SMG5	70	98.726	ENSTTRG00000001401	SMG5	69	98.726	Tursiops_truncatus
ENSEEUG00000012690	SMG5	73	96.254	ENSUAMG00000013721	SMG5	72	96.254	Ursus_americanus
ENSEEUG00000012690	SMG5	74	93.660	ENSUMAG00000018041	SMG5	74	93.429	Ursus_maritimus
ENSEEUG00000012690	SMG5	75	86.744	ENSVPAG00000009446	SMG5	75	86.744	Vicugna_pacos
ENSEEUG00000012690	SMG5	73	97.118	ENSVVUG00000005887	SMG5	72	97.118	Vulpes_vulpes
ENSEEUG00000012690	SMG5	53	82.482	ENSXETG00000033791	SMG5	66	82.482	Xenopus_tropicalis
ENSEEUG00000012690	SMG5	54	77.966	ENSXCOG00000004379	smg5	59	78.873	Xiphophorus_couchianus
ENSEEUG00000012690	SMG5	74	77.684	ENSXMAG00000013499	smg5	73	77.591	Xiphophorus_maculatus