EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEEUG00000013993 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Plus strand
Length: 94928 bases
Position: chrGeneScaffold_6413:132-95059
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000012762	TruB_N	PF01509.18	1.6e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000013994	TRUB1-201	1080	-	ENSEEUP00000012762	359 (aa)	-	UPI0000F63B9A

Gene Model

Click here to download ENSEEUG00000013993's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000013993's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEEUG00000013993	TRUB1	65	31.092	ENSEEUG00000008908	TRUB2	71	31.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000013993	TRUB1	99	77.374	ENSG00000165832	TRUB1	99	75.978	Homo_sapiens
ENSEEUG00000013993	TRUB1	68	60.408	ENSAPOG00000020565	trub1	89	60.163	Acanthochromis_polyacanthus
ENSEEUG00000013993	TRUB1	96	78.324	ENSAMEG00000014931	TRUB1	99	76.667	Ailuropoda_melanoleuca
ENSEEUG00000013993	TRUB1	83	50.167	ENSACIG00000003060	trub1	94	51.408	Amphilophus_citrinellus
ENSEEUG00000013993	TRUB1	68	60.408	ENSAOCG00000017188	trub1	89	60.163	Amphiprion_ocellaris
ENSEEUG00000013993	TRUB1	73	57.854	ENSAPEG00000015209	trub1	89	59.756	Amphiprion_percula
ENSEEUG00000013993	TRUB1	67	61.411	ENSATEG00000023291	trub1	86	61.411	Anabas_testudineus
ENSEEUG00000013993	TRUB1	77	65.827	ENSAPLG00000006808	TRUB1	99	65.827	Anas_platyrhynchos
ENSEEUG00000013993	TRUB1	76	60.294	ENSACAG00000009282	TRUB1	98	60.517	Anolis_carolinensis
ENSEEUG00000013993	TRUB1	83	82.550	ENSANAG00000022870	TRUB1	99	76.190	Aotus_nancymaae
ENSEEUG00000013993	TRUB1	77	55.957	ENSACLG00000000823	trub1	93	58.015	Astatotilapia_calliptera
ENSEEUG00000013993	TRUB1	72	58.462	ENSAMXG00000015845	trub1	87	58.462	Astyanax_mexicanus
ENSEEUG00000013993	TRUB1	98	76.923	ENSBTAG00000012955	TRUB1	100	75.278	Bos_taurus
ENSEEUG00000013993	TRUB1	99	76.257	ENSCJAG00000047815	TRUB1	99	76.257	Callithrix_jacchus
ENSEEUG00000013993	TRUB1	99	77.374	ENSCAFG00000011688	TRUB1	99	77.095	Canis_familiaris
ENSEEUG00000013993	TRUB1	99	77.654	ENSCAFG00020013237	TRUB1	99	77.374	Canis_lupus_dingo
ENSEEUG00000013993	TRUB1	100	77.994	ENSCHIG00000020884	TRUB1	100	76.602	Capra_hircus
ENSEEUG00000013993	TRUB1	98	77.273	ENSTSYG00000000446	TRUB1	98	76.705	Carlito_syrichta
ENSEEUG00000013993	TRUB1	71	70.866	ENSCAPG00000017088	TRUB1	100	70.866	Cavia_aperea
ENSEEUG00000013993	TRUB1	70	65.873	ENSCPOG00000030129	-	85	64.286	Cavia_porcellus
ENSEEUG00000013993	TRUB1	69	69.478	ENSCPOG00000040236	-	99	69.076	Cavia_porcellus
ENSEEUG00000013993	TRUB1	83	82.274	ENSCCAG00000028842	TRUB1	99	75.698	Cebus_capucinus
ENSEEUG00000013993	TRUB1	99	76.816	ENSCATG00000033431	TRUB1	99	75.978	Cercocebus_atys
ENSEEUG00000013993	TRUB1	69	72.289	ENSCLAG00000008664	TRUB1	99	70.683	Chinchilla_lanigera
ENSEEUG00000013993	TRUB1	99	77.654	ENSCSAG00000004891	TRUB1	99	76.257	Chlorocebus_sabaeus
ENSEEUG00000013993	TRUB1	96	78.779	ENSCHOG00000011931	TRUB1	96	77.907	Choloepus_hoffmanni
ENSEEUG00000013993	TRUB1	76	68.750	ENSCPBG00000003051	TRUB1	94	68.750	Chrysemys_picta_bellii
ENSEEUG00000013993	TRUB1	99	77.654	ENSCANG00000029445	TRUB1	99	76.257	Colobus_angolensis_palliatus
ENSEEUG00000013993	TRUB1	71	72.157	ENSCGRG00001016772	-	89	66.667	Cricetulus_griseus_chok1gshd
ENSEEUG00000013993	TRUB1	78	69.039	ENSCGRG00001010322	-	79	69.728	Cricetulus_griseus_chok1gshd
ENSEEUG00000013993	TRUB1	78	74.733	ENSCGRG00000010806	Trub1	90	75.510	Cricetulus_griseus_crigri
ENSEEUG00000013993	TRUB1	68	55.102	ENSCSEG00000011261	trub1	94	50.690	Cynoglossus_semilaevis
ENSEEUG00000013993	TRUB1	68	60.000	ENSCVAG00000008791	trub1	79	58.140	Cyprinodon_variegatus
ENSEEUG00000013993	TRUB1	73	58.555	ENSDARG00000053805	trub1	99	70.588	Danio_rerio
ENSEEUG00000013993	TRUB1	97	73.775	ENSDNOG00000001069	TRUB1	99	73.184	Dasypus_novemcinctus
ENSEEUG00000013993	TRUB1	99	73.950	ENSDORG00000010431	Trub1	99	73.109	Dipodomys_ordii
ENSEEUG00000013993	TRUB1	56	86.325	ENSETEG00000009183	TRUB1	74	71.038	Echinops_telfairi
ENSEEUG00000013993	TRUB1	83	81.605	ENSEASG00005014739	TRUB1	99	75.698	Equus_asinus_asinus
ENSEEUG00000013993	TRUB1	83	81.605	ENSECAG00000007177	TRUB1	99	75.698	Equus_caballus
ENSEEUG00000013993	TRUB1	68	61.224	ENSELUG00000000502	trub1	86	61.224	Esox_lucius
ENSEEUG00000013993	TRUB1	83	83.221	ENSFCAG00000031927	TRUB1	99	77.031	Felis_catus
ENSEEUG00000013993	TRUB1	67	65.417	ENSFALG00000002232	TRUB1	92	65.417	Ficedula_albicollis
ENSEEUG00000013993	TRUB1	69	69.076	ENSFDAG00000008140	TRUB1	99	68.273	Fukomys_damarensis
ENSEEUG00000013993	TRUB1	61	66.972	ENSFHEG00000004016	trub1	84	58.776	Fundulus_heteroclitus
ENSEEUG00000013993	TRUB1	76	65.074	ENSGALG00000009091	TRUB1	96	65.074	Gallus_gallus
ENSEEUG00000013993	TRUB1	71	56.471	ENSGAFG00000009193	trub1	88	56.175	Gambusia_affinis
ENSEEUG00000013993	TRUB1	54	57.949	ENSGACG00000015387	trub1	96	57.949	Gasterosteus_aculeatus
ENSEEUG00000013993	TRUB1	88	61.905	ENSGAGG00000009758	TRUB1	78	68.613	Gopherus_agassizii
ENSEEUG00000013993	TRUB1	98	77.841	ENSGGOG00000004583	TRUB1	98	76.989	Gorilla_gorilla
ENSEEUG00000013993	TRUB1	77	56.679	ENSHBUG00000016787	trub1	93	58.015	Haplochromis_burtoni
ENSEEUG00000013993	TRUB1	98	73.371	ENSHGLG00000015314	TRUB1	99	72.805	Heterocephalus_glaber_female
ENSEEUG00000013993	TRUB1	54	77.436	ENSHGLG00100009183	TRUB1	80	78.307	Heterocephalus_glaber_male
ENSEEUG00000013993	TRUB1	72	57.752	ENSHCOG00000017877	trub1	89	59.592	Hippocampus_comes
ENSEEUG00000013993	TRUB1	74	58.712	ENSIPUG00000017559	trub1	94	58.271	Ictalurus_punctatus
ENSEEUG00000013993	TRUB1	83	80.936	ENSSTOG00000003641	TRUB1	99	73.184	Ictidomys_tridecemlineatus
ENSEEUG00000013993	TRUB1	84	78.000	ENSJJAG00000011800	Trub1	86	78.571	Jaculus_jaculus
ENSEEUG00000013993	TRUB1	69	59.350	ENSKMAG00000006232	trub1	88	59.350	Kryptolebias_marmoratus
ENSEEUG00000013993	TRUB1	74	57.143	ENSLBEG00000026722	trub1	92	57.143	Labrus_bergylta
ENSEEUG00000013993	TRUB1	74	66.792	ENSLACG00000014885	TRUB1	89	66.792	Latimeria_chalumnae
ENSEEUG00000013993	TRUB1	77	61.818	ENSLOCG00000012979	trub1	89	63.118	Lepisosteus_oculatus
ENSEEUG00000013993	TRUB1	100	65.301	ENSLAFG00000015452	TRUB1	99	65.753	Loxodonta_africana
ENSEEUG00000013993	TRUB1	99	77.374	ENSMFAG00000031767	TRUB1	99	75.978	Macaca_fascicularis
ENSEEUG00000013993	TRUB1	99	77.654	ENSMMUG00000001902	TRUB1	99	76.257	Macaca_mulatta
ENSEEUG00000013993	TRUB1	99	73.743	ENSMNEG00000044646	TRUB1	99	72.346	Macaca_nemestrina
ENSEEUG00000013993	TRUB1	99	77.654	ENSMLEG00000042655	TRUB1	99	76.257	Mandrillus_leucophaeus
ENSEEUG00000013993	TRUB1	77	55.957	ENSMZEG00005024095	trub1	93	58.015	Maylandia_zebra
ENSEEUG00000013993	TRUB1	76	64.706	ENSMGAG00000011135	TRUB1	93	64.706	Meleagris_gallopavo
ENSEEUG00000013993	TRUB1	78	71.886	ENSMAUG00000011101	Trub1	87	72.789	Mesocricetus_auratus
ENSEEUG00000013993	TRUB1	99	78.212	ENSMICG00000016324	TRUB1	99	76.816	Microcebus_murinus
ENSEEUG00000013993	TRUB1	78	73.665	ENSMOCG00000017759	Trub1	89	74.490	Microtus_ochrogaster
ENSEEUG00000013993	TRUB1	80	71.329	ENSMODG00000009676	TRUB1	93	63.988	Monodelphis_domestica
ENSEEUG00000013993	TRUB1	79	74.035	MGP_CAROLIEiJ_G0023100	Trub1	87	74.490	Mus_caroli
ENSEEUG00000013993	TRUB1	79	72.982	ENSMUSG00000025086	Trub1	87	73.469	Mus_musculus
ENSEEUG00000013993	TRUB1	83	73.579	MGP_PahariEiJ_G0014588	Trub1	87	74.150	Mus_pahari
ENSEEUG00000013993	TRUB1	79	73.333	MGP_SPRETEiJ_G0024021	Trub1	87	73.810	Mus_spretus
ENSEEUG00000013993	TRUB1	96	78.779	ENSMPUG00000003556	TRUB1	99	77.095	Mustela_putorius_furo
ENSEEUG00000013993	TRUB1	82	81.229	ENSMLUG00000017686	TRUB1	99	72.626	Myotis_lucifugus
ENSEEUG00000013993	TRUB1	84	79.000	ENSNGAG00000018682	Trub1	84	79.252	Nannospalax_galili
ENSEEUG00000013993	TRUB1	69	60.163	ENSNBRG00000023393	trub1	88	60.163	Neolamprologus_brichardi
ENSEEUG00000013993	TRUB1	83	82.274	ENSNLEG00000016345	TRUB1	99	75.978	Nomascus_leucogenys
ENSEEUG00000013993	TRUB1	56	75.622	ENSMEUG00000006603	TRUB1	77	74.038	Notamacropus_eugenii
ENSEEUG00000013993	TRUB1	83	74.582	ENSOPRG00000009371	TRUB1	85	75.427	Ochotona_princeps
ENSEEUG00000013993	TRUB1	100	74.095	ENSODEG00000010854	TRUB1	100	73.259	Octodon_degus
ENSEEUG00000013993	TRUB1	73	57.854	ENSONIG00000007249	trub1	89	59.756	Oreochromis_niloticus
ENSEEUG00000013993	TRUB1	76	71.898	ENSOANG00000001556	TRUB1	92	71.223	Ornithorhynchus_anatinus
ENSEEUG00000013993	TRUB1	83	75.585	ENSOCUG00000009456	TRUB1	85	76.109	Oryctolagus_cuniculus
ENSEEUG00000013993	TRUB1	67	60.996	ENSORLG00000029719	trub1	86	60.996	Oryzias_latipes
ENSEEUG00000013993	TRUB1	67	60.581	ENSORLG00020016767	trub1	85	60.581	Oryzias_latipes_hni
ENSEEUG00000013993	TRUB1	73	57.634	ENSORLG00015014728	trub1	92	57.854	Oryzias_latipes_hsok
ENSEEUG00000013993	TRUB1	72	57.752	ENSOMEG00000014556	trub1	85	59.917	Oryzias_melastigma
ENSEEUG00000013993	TRUB1	99	78.212	ENSOGAG00000015895	TRUB1	99	76.816	Otolemur_garnettii
ENSEEUG00000013993	TRUB1	82	81.063	ENSOARG00000015591	TRUB1	100	74.863	Ovis_aries
ENSEEUG00000013993	TRUB1	99	77.933	ENSPPAG00000043645	TRUB1	99	76.536	Pan_paniscus
ENSEEUG00000013993	TRUB1	83	82.550	ENSPPRG00000007096	TRUB1	99	76.751	Panthera_pardus
ENSEEUG00000013993	TRUB1	83	82.886	ENSPTIG00000006378	TRUB1	99	77.031	Panthera_tigris_altaica
ENSEEUG00000013993	TRUB1	99	77.933	ENSPTRG00000002964	TRUB1	99	76.536	Pan_troglodytes
ENSEEUG00000013993	TRUB1	99	77.654	ENSPANG00000020712	TRUB1	99	76.257	Papio_anubis
ENSEEUG00000013993	TRUB1	76	67.279	ENSPSIG00000012877	TRUB1	93	67.279	Pelodiscus_sinensis
ENSEEUG00000013993	TRUB1	68	58.367	ENSPMGG00000000075	trub1	88	58.367	Periophthalmus_magnuspinnatus
ENSEEUG00000013993	TRUB1	84	71.947	ENSPEMG00000011156	Trub1	86	73.129	Peromyscus_maniculatus_bairdii
ENSEEUG00000013993	TRUB1	80	70.629	ENSPCIG00000009729	TRUB1	79	69.863	Phascolarctos_cinereus
ENSEEUG00000013993	TRUB1	68	57.959	ENSPFOG00000009950	trub1	90	57.959	Poecilia_formosa
ENSEEUG00000013993	TRUB1	72	56.923	ENSPLAG00000013855	trub1	86	57.959	Poecilia_latipinna
ENSEEUG00000013993	TRUB1	72	56.923	ENSPMEG00000009064	trub1	88	57.959	Poecilia_mexicana
ENSEEUG00000013993	TRUB1	68	58.776	ENSPREG00000003343	trub1	88	58.776	Poecilia_reticulata
ENSEEUG00000013993	TRUB1	96	77.907	ENSPPYG00000002676	TRUB1	99	76.257	Pongo_abelii
ENSEEUG00000013993	TRUB1	100	61.281	ENSPCAG00000008427	TRUB1	99	61.732	Procavia_capensis
ENSEEUG00000013993	TRUB1	83	76.589	ENSPCOG00000024360	TRUB1	99	71.508	Propithecus_coquereli
ENSEEUG00000013993	TRUB1	76	73.993	ENSPVAG00000007575	TRUB1	100	73.260	Pteropus_vampyrus
ENSEEUG00000013993	TRUB1	77	55.957	ENSPNYG00000018614	trub1	93	58.015	Pundamilia_nyererei
ENSEEUG00000013993	TRUB1	72	51.154	ENSPNAG00000006881	trub1	84	51.154	Pygocentrus_nattereri
ENSEEUG00000013993	TRUB1	84	73.667	ENSRNOG00000017321	Trub1	86	74.150	Rattus_norvegicus
ENSEEUG00000013993	TRUB1	99	74.302	ENSRBIG00000033423	TRUB1	99	73.464	Rhinopithecus_bieti
ENSEEUG00000013993	TRUB1	99	77.095	ENSRROG00000033902	TRUB1	99	75.698	Rhinopithecus_roxellana
ENSEEUG00000013993	TRUB1	96	77.907	ENSSBOG00000024237	TRUB1	99	75.698	Saimiri_boliviensis_boliviensis
ENSEEUG00000013993	TRUB1	71	67.969	ENSSHAG00000009346	TRUB1	86	67.969	Sarcophilus_harrisii
ENSEEUG00000013993	TRUB1	68	61.317	ENSSFOG00015022124	trub1	83	61.317	Scleropages_formosus
ENSEEUG00000013993	TRUB1	69	60.569	ENSSMAG00000001020	trub1	88	60.569	Scophthalmus_maximus
ENSEEUG00000013993	TRUB1	67	60.000	ENSSDUG00000016414	trub1	88	60.163	Seriola_dumerili
ENSEEUG00000013993	TRUB1	67	60.417	ENSSLDG00000015486	trub1	88	60.569	Seriola_lalandi_dorsalis
ENSEEUG00000013993	TRUB1	80	68.750	ENSSPUG00000001642	TRUB1	93	70.221	Sphenodon_punctatus
ENSEEUG00000013993	TRUB1	77	56.835	ENSSPAG00000001217	trub1	94	58.935	Stegastes_partitus
ENSEEUG00000013993	TRUB1	99	72.472	ENSSSCG00000010653	TRUB1	99	72.753	Sus_scrofa
ENSEEUG00000013993	TRUB1	75	66.667	ENSTGUG00000010971	TRUB1	97	66.544	Taeniopygia_guttata
ENSEEUG00000013993	TRUB1	70	65.217	ENSTBEG00000002880	TRUB1	99	65.217	Tupaia_belangeri
ENSEEUG00000013993	TRUB1	60	80.841	ENSTTRG00000005767	TRUB1	100	72.527	Tursiops_truncatus
ENSEEUG00000013993	TRUB1	96	79.070	ENSUAMG00000024876	TRUB1	99	77.095	Ursus_americanus
ENSEEUG00000013993	TRUB1	82	83.276	ENSUMAG00000002411	TRUB1	99	75.698	Ursus_maritimus
ENSEEUG00000013993	TRUB1	98	77.054	ENSVPAG00000005507	TRUB1	100	75.766	Vicugna_pacos
ENSEEUG00000013993	TRUB1	99	77.374	ENSVVUG00000010085	TRUB1	83	77.095	Vulpes_vulpes
ENSEEUG00000013993	TRUB1	76	58.088	ENSXETG00000023828	trub1	98	58.088	Xenopus_tropicalis
ENSEEUG00000013993	TRUB1	71	56.471	ENSXCOG00000017847	trub1	86	56.790	Xiphophorus_couchianus
ENSEEUG00000013993	TRUB1	72	56.154	ENSXMAG00000014701	trub1	88	57.143	Xiphophorus_maculatus