EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEEUG00000015181 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Erinaceus_europaeus
Status: putative
Strand: Minus strand
Length: 10133 bases
Position: chrGeneScaffold_7306:255-10387
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEEUP00000013851	LSM	PF01423.22	6.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEEUT00000015177	LSM1-201	300	-	ENSEEUP00000013851	99 (aa)	-	UPI0000F6228B

Gene Model

Click here to download ENSEEUG00000015181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEEUG00000015181's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEEUG00000015181	LSM1	100	69.925	ENSG00000175324	LSM1	89	97.436	Homo_sapiens
ENSEEUG00000015181	LSM1	97	77.083	ENSAPOG00000010833	lsm1	72	77.083	Acanthochromis_polyacanthus
ENSEEUG00000015181	LSM1	100	69.925	ENSAMEG00000011141	LSM1	100	69.925	Ailuropoda_melanoleuca
ENSEEUG00000015181	LSM1	78	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSEEUG00000015181	LSM1	97	77.083	ENSAOCG00000017997	-	72	78.723	Amphiprion_ocellaris
ENSEEUG00000015181	LSM1	97	77.083	ENSAOCG00000017096	lsm1	72	77.083	Amphiprion_ocellaris
ENSEEUG00000015181	LSM1	97	77.083	ENSAPEG00000011669	lsm1	72	77.083	Amphiprion_percula
ENSEEUG00000015181	LSM1	100	63.158	ENSATEG00000022266	lsm1	100	63.158	Anabas_testudineus
ENSEEUG00000015181	LSM1	100	69.925	ENSANAG00000027785	LSM1	89	97.436	Aotus_nancymaae
ENSEEUG00000015181	LSM1	97	77.083	ENSACLG00000011400	lsm1	72	77.083	Astatotilapia_calliptera
ENSEEUG00000015181	LSM1	97	81.250	ENSAMXG00000005441	lsm1	72	81.250	Astyanax_mexicanus
ENSEEUG00000015181	LSM1	100	69.925	ENSBTAG00000001612	LSM1	100	69.925	Bos_taurus
ENSEEUG00000015181	LSM1	76	61.333	WBGene00003076	lsm-1	60	61.333	Caenorhabditis_elegans
ENSEEUG00000015181	LSM1	100	69.925	ENSCJAG00000048015	LSM1	89	97.436	Callithrix_jacchus
ENSEEUG00000015181	LSM1	100	69.925	ENSCAFG00000006113	LSM1	100	69.925	Canis_familiaris
ENSEEUG00000015181	LSM1	100	69.925	ENSCAFG00020001822	LSM1	100	69.925	Canis_lupus_dingo
ENSEEUG00000015181	LSM1	100	69.925	ENSCHIG00000013194	LSM1	100	69.925	Capra_hircus
ENSEEUG00000015181	LSM1	100	69.925	ENSTSYG00000010394	LSM1	89	97.436	Carlito_syrichta
ENSEEUG00000015181	LSM1	100	69.925	ENSCPOG00000032671	LSM1	100	69.925	Cavia_porcellus
ENSEEUG00000015181	LSM1	100	69.925	ENSCCAG00000037171	LSM1	89	97.436	Cebus_capucinus
ENSEEUG00000015181	LSM1	100	69.925	ENSCATG00000020377	LSM1	89	97.436	Cercocebus_atys
ENSEEUG00000015181	LSM1	100	69.173	ENSCLAG00000001137	LSM1	100	69.173	Chinchilla_lanigera
ENSEEUG00000015181	LSM1	100	69.925	ENSCSAG00000015485	LSM1	100	69.925	Chlorocebus_sabaeus
ENSEEUG00000015181	LSM1	100	69.173	ENSCHOG00000006030	LSM1	100	69.173	Choloepus_hoffmanni
ENSEEUG00000015181	LSM1	94	60.630	ENSCPBG00000006569	LSM1	86	60.630	Chrysemys_picta_bellii
ENSEEUG00000015181	LSM1	97	71.875	ENSCING00000013536	-	73	71.875	Ciona_intestinalis
ENSEEUG00000015181	LSM1	100	69.925	ENSCANG00000019173	LSM1	89	97.436	Colobus_angolensis_palliatus
ENSEEUG00000015181	LSM1	100	69.925	ENSCGRG00001024560	-	100	69.925	Cricetulus_griseus_chok1gshd
ENSEEUG00000015181	LSM1	71	91.429	ENSCGRG00001002259	-	61	91.429	Cricetulus_griseus_chok1gshd
ENSEEUG00000015181	LSM1	71	91.429	ENSCGRG00000013603	-	61	91.429	Cricetulus_griseus_crigri
ENSEEUG00000015181	LSM1	100	69.925	ENSCGRG00000006554	-	100	69.925	Cricetulus_griseus_crigri
ENSEEUG00000015181	LSM1	78	92.208	ENSCSEG00000010570	lsm1	53	92.208	Cynoglossus_semilaevis
ENSEEUG00000015181	LSM1	78	90.909	ENSCSEG00000008319	lsm1	53	90.909	Cynoglossus_semilaevis
ENSEEUG00000015181	LSM1	100	62.406	ENSCVAG00000003871	lsm1	100	62.406	Cyprinodon_variegatus
ENSEEUG00000015181	LSM1	97	81.250	ENSDARG00000043177	lsm1	72	81.250	Danio_rerio
ENSEEUG00000015181	LSM1	100	69.925	ENSDNOG00000046387	-	100	69.925	Dasypus_novemcinctus
ENSEEUG00000015181	LSM1	100	69.173	ENSDNOG00000032911	-	100	69.173	Dasypus_novemcinctus
ENSEEUG00000015181	LSM1	97	64.583	ENSDNOG00000046620	-	81	64.583	Dasypus_novemcinctus
ENSEEUG00000015181	LSM1	97	66.154	ENSDNOG00000030989	-	98	66.154	Dasypus_novemcinctus
ENSEEUG00000015181	LSM1	100	69.925	ENSDORG00000028172	Lsm1	100	69.925	Dipodomys_ordii
ENSEEUG00000015181	LSM1	97	65.979	FBgn0261067	LSm1	70	65.979	Drosophila_melanogaster
ENSEEUG00000015181	LSM1	100	69.173	ENSEASG00005016677	LSM1	100	69.173	Equus_asinus_asinus
ENSEEUG00000015181	LSM1	100	69.173	ENSECAG00000010461	LSM1	100	69.173	Equus_caballus
ENSEEUG00000015181	LSM1	97	79.167	ENSELUG00000002322	lsm1	72	79.167	Esox_lucius
ENSEEUG00000015181	LSM1	97	81.250	ENSELUG00000023374	lsm1	72	81.250	Esox_lucius
ENSEEUG00000015181	LSM1	100	69.925	ENSFCAG00000039335	LSM1	89	97.436	Felis_catus
ENSEEUG00000015181	LSM1	85	64.407	ENSFALG00000006723	LSM1	100	64.407	Ficedula_albicollis
ENSEEUG00000015181	LSM1	100	69.925	ENSFDAG00000007658	LSM1	100	69.925	Fukomys_damarensis
ENSEEUG00000015181	LSM1	100	62.406	ENSFHEG00000009556	lsm1	100	62.406	Fundulus_heteroclitus
ENSEEUG00000015181	LSM1	97	77.083	ENSGMOG00000016651	lsm1	71	77.083	Gadus_morhua
ENSEEUG00000015181	LSM1	100	67.669	ENSGALG00000003245	LSM1	100	67.669	Gallus_gallus
ENSEEUG00000015181	LSM1	100	62.406	ENSGAFG00000011355	lsm1	100	62.406	Gambusia_affinis
ENSEEUG00000015181	LSM1	100	63.910	ENSGACG00000011763	lsm1	98	63.910	Gasterosteus_aculeatus
ENSEEUG00000015181	LSM1	100	68.421	ENSGAGG00000024065	LSM1	100	68.421	Gopherus_agassizii
ENSEEUG00000015181	LSM1	100	69.925	ENSGGOG00000022658	LSM1	89	97.436	Gorilla_gorilla
ENSEEUG00000015181	LSM1	97	77.083	ENSHBUG00000010897	lsm1	72	77.083	Haplochromis_burtoni
ENSEEUG00000015181	LSM1	100	69.925	ENSHGLG00000005711	LSM1	100	69.925	Heterocephalus_glaber_female
ENSEEUG00000015181	LSM1	97	64.583	ENSHGLG00000017574	-	72	64.583	Heterocephalus_glaber_female
ENSEEUG00000015181	LSM1	97	64.583	ENSHGLG00100012152	-	72	64.583	Heterocephalus_glaber_male
ENSEEUG00000015181	LSM1	100	69.925	ENSHGLG00100017660	LSM1	100	69.925	Heterocephalus_glaber_male
ENSEEUG00000015181	LSM1	100	62.406	ENSHCOG00000017233	lsm1	100	62.406	Hippocampus_comes
ENSEEUG00000015181	LSM1	97	81.250	ENSIPUG00000002312	LSM1	72	81.250	Ictalurus_punctatus
ENSEEUG00000015181	LSM1	78	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSEEUG00000015181	LSM1	100	69.173	ENSJJAG00000014605	-	100	69.173	Jaculus_jaculus
ENSEEUG00000015181	LSM1	100	63.158	ENSKMAG00000003016	lsm1	100	63.158	Kryptolebias_marmoratus
ENSEEUG00000015181	LSM1	97	77.083	ENSLBEG00000022352	lsm1	72	77.083	Labrus_bergylta
ENSEEUG00000015181	LSM1	85	62.712	ENSLACG00000010947	LSM1	98	62.712	Latimeria_chalumnae
ENSEEUG00000015181	LSM1	100	67.669	ENSLOCG00000015149	lsm1	100	67.669	Lepisosteus_oculatus
ENSEEUG00000015181	LSM1	100	69.925	ENSLAFG00000003534	LSM1	100	69.925	Loxodonta_africana
ENSEEUG00000015181	LSM1	100	69.925	ENSMFAG00000032661	LSM1	89	97.436	Macaca_fascicularis
ENSEEUG00000015181	LSM1	100	69.925	ENSMLEG00000034535	LSM1	89	97.436	Mandrillus_leucophaeus
ENSEEUG00000015181	LSM1	100	63.158	ENSMAMG00000007464	lsm1	100	63.158	Mastacembelus_armatus
ENSEEUG00000015181	LSM1	97	77.083	ENSMZEG00005010321	lsm1	72	77.083	Maylandia_zebra
ENSEEUG00000015181	LSM1	97	83.333	ENSMGAG00000002125	LSM1	72	83.333	Meleagris_gallopavo
ENSEEUG00000015181	LSM1	100	69.925	ENSMICG00000030726	LSM1	89	97.436	Microcebus_murinus
ENSEEUG00000015181	LSM1	100	69.925	ENSMOCG00000022817	Lsm1	100	69.925	Microtus_ochrogaster
ENSEEUG00000015181	LSM1	97	77.083	ENSMMOG00000015466	lsm1	72	77.083	Mola_mola
ENSEEUG00000015181	LSM1	100	69.173	ENSMODG00000010732	-	100	69.173	Monodelphis_domestica
ENSEEUG00000015181	LSM1	78	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSEEUG00000015181	LSM1	100	69.173	MGP_CAROLIEiJ_G0030930	Lsm1	100	69.173	Mus_caroli
ENSEEUG00000015181	LSM1	100	69.173	ENSMUSG00000037296	Lsm1	91	97.436	Mus_musculus
ENSEEUG00000015181	LSM1	100	69.173	MGP_PahariEiJ_G0021400	Lsm1	100	69.173	Mus_pahari
ENSEEUG00000015181	LSM1	100	69.173	MGP_SPRETEiJ_G0032049	Lsm1	100	69.173	Mus_spretus
ENSEEUG00000015181	LSM1	100	69.925	ENSMPUG00000009883	LSM1	100	69.925	Mustela_putorius_furo
ENSEEUG00000015181	LSM1	100	69.925	ENSMLUG00000003734	LSM1	100	69.925	Myotis_lucifugus
ENSEEUG00000015181	LSM1	100	69.173	ENSNGAG00000003753	Lsm1	100	69.173	Nannospalax_galili
ENSEEUG00000015181	LSM1	78	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSEEUG00000015181	LSM1	100	69.925	ENSNLEG00000029390	LSM1	89	97.436	Nomascus_leucogenys
ENSEEUG00000015181	LSM1	100	69.173	ENSMEUG00000014077	LSM1	100	69.173	Notamacropus_eugenii
ENSEEUG00000015181	LSM1	84	64.103	ENSOPRG00000000333	LSM1	100	64.103	Ochotona_princeps
ENSEEUG00000015181	LSM1	100	69.925	ENSODEG00000004834	LSM1	100	69.925	Octodon_degus
ENSEEUG00000015181	LSM1	97	77.083	ENSONIG00000010782	lsm1	72	77.083	Oreochromis_niloticus
ENSEEUG00000015181	LSM1	100	69.173	ENSOANG00000003256	LSM1	100	69.173	Ornithorhynchus_anatinus
ENSEEUG00000015181	LSM1	100	69.925	ENSOCUG00000015399	LSM1	100	69.925	Oryctolagus_cuniculus
ENSEEUG00000015181	LSM1	100	63.910	ENSORLG00000030288	lsm1	100	63.910	Oryzias_latipes
ENSEEUG00000015181	LSM1	100	63.910	ENSORLG00020003941	lsm1	100	63.910	Oryzias_latipes_hni
ENSEEUG00000015181	LSM1	80	91.139	ENSORLG00020006213	-	51	91.139	Oryzias_latipes_hni
ENSEEUG00000015181	LSM1	100	63.910	ENSORLG00015018350	lsm1	100	63.910	Oryzias_latipes_hsok
ENSEEUG00000015181	LSM1	97	78.125	ENSOMEG00000012454	lsm1	72	78.125	Oryzias_melastigma
ENSEEUG00000015181	LSM1	100	69.925	ENSOGAG00000015161	LSM1	100	69.925	Otolemur_garnettii
ENSEEUG00000015181	LSM1	100	69.925	ENSOARG00000001317	LSM1	100	69.925	Ovis_aries
ENSEEUG00000015181	LSM1	100	69.925	ENSPPAG00000032279	LSM1	89	97.436	Pan_paniscus
ENSEEUG00000015181	LSM1	100	69.925	ENSPPRG00000014172	-	89	97.436	Panthera_pardus
ENSEEUG00000015181	LSM1	100	69.925	ENSPTIG00000010289	LSM1	89	97.436	Panthera_tigris_altaica
ENSEEUG00000015181	LSM1	100	69.925	ENSPTRG00000020169	LSM1	89	97.436	Pan_troglodytes
ENSEEUG00000015181	LSM1	100	69.925	ENSPANG00000008814	LSM1	89	97.436	Papio_anubis
ENSEEUG00000015181	LSM1	97	79.167	ENSPKIG00000019409	LSM1	72	79.167	Paramormyrops_kingsleyae
ENSEEUG00000015181	LSM1	97	83.333	ENSPKIG00000001839	lsm1	72	83.333	Paramormyrops_kingsleyae
ENSEEUG00000015181	LSM1	97	61.538	ENSPSIG00000012563	LSM1	99	61.538	Pelodiscus_sinensis
ENSEEUG00000015181	LSM1	78	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSEEUG00000015181	LSM1	58	96.491	ENSPMAG00000002671	lsm1	50	96.491	Petromyzon_marinus
ENSEEUG00000015181	LSM1	97	83.333	ENSPCIG00000008880	LSM1	72	83.333	Phascolarctos_cinereus
ENSEEUG00000015181	LSM1	100	62.406	ENSPFOG00000016029	lsm1	100	62.406	Poecilia_formosa
ENSEEUG00000015181	LSM1	100	62.406	ENSPLAG00000007879	lsm1	100	62.406	Poecilia_latipinna
ENSEEUG00000015181	LSM1	100	62.406	ENSPMEG00000023550	lsm1	100	62.406	Poecilia_mexicana
ENSEEUG00000015181	LSM1	100	62.406	ENSPREG00000009574	lsm1	100	62.406	Poecilia_reticulata
ENSEEUG00000015181	LSM1	100	69.925	ENSPPYG00000018521	LSM1	100	69.925	Pongo_abelii
ENSEEUG00000015181	LSM1	100	69.925	ENSPCOG00000020901	-	89	97.436	Propithecus_coquereli
ENSEEUG00000015181	LSM1	100	69.925	ENSPVAG00000006016	LSM1	100	69.925	Pteropus_vampyrus
ENSEEUG00000015181	LSM1	97	77.083	ENSPNYG00000018067	lsm1	72	77.083	Pundamilia_nyererei
ENSEEUG00000015181	LSM1	97	81.250	ENSPNAG00000013707	lsm1	72	81.250	Pygocentrus_nattereri
ENSEEUG00000015181	LSM1	100	69.173	ENSRNOG00000015375	Lsm1	100	69.173	Rattus_norvegicus
ENSEEUG00000015181	LSM1	100	69.925	ENSRBIG00000027449	LSM1	89	97.436	Rhinopithecus_bieti
ENSEEUG00000015181	LSM1	100	69.925	ENSRROG00000036074	LSM1	89	97.436	Rhinopithecus_roxellana
ENSEEUG00000015181	LSM1	100	69.173	ENSSHAG00000017260	LSM1	100	69.173	Sarcophilus_harrisii
ENSEEUG00000015181	LSM1	97	83.333	ENSSFOG00015019528	lsm1	72	83.333	Scleropages_formosus
ENSEEUG00000015181	LSM1	100	63.158	ENSSMAG00000004930	lsm1	100	63.158	Scophthalmus_maximus
ENSEEUG00000015181	LSM1	97	77.083	ENSSDUG00000021823	lsm1	72	77.083	Seriola_dumerili
ENSEEUG00000015181	LSM1	97	77.083	ENSSLDG00000012154	lsm1	72	77.083	Seriola_lalandi_dorsalis
ENSEEUG00000015181	LSM1	100	68.421	ENSSPUG00000014878	LSM1	100	68.421	Sphenodon_punctatus
ENSEEUG00000015181	LSM1	100	63.158	ENSSPAG00000020548	lsm1	100	63.158	Stegastes_partitus
ENSEEUG00000015181	LSM1	100	69.925	ENSSSCG00000039058	LSM1	100	69.925	Sus_scrofa
ENSEEUG00000015181	LSM1	100	67.669	ENSTGUG00000004793	LSM1	100	67.669	Taeniopygia_guttata
ENSEEUG00000015181	LSM1	97	78.125	ENSTRUG00000025239	lsm1	72	78.125	Takifugu_rubripes
ENSEEUG00000015181	LSM1	97	78.125	ENSTNIG00000004055	lsm1	72	78.125	Tetraodon_nigroviridis
ENSEEUG00000015181	LSM1	84	64.103	ENSTBEG00000015884	LSM1	100	64.103	Tupaia_belangeri
ENSEEUG00000015181	LSM1	100	69.925	ENSTTRG00000004482	LSM1	100	69.925	Tursiops_truncatus
ENSEEUG00000015181	LSM1	100	69.925	ENSUAMG00000004103	LSM1	100	69.925	Ursus_americanus
ENSEEUG00000015181	LSM1	100	69.925	ENSUMAG00000009132	LSM1	100	69.925	Ursus_maritimus
ENSEEUG00000015181	LSM1	78	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSEEUG00000015181	LSM1	81	71.250	ENSVVUG00000014880	-	85	71.250	Vulpes_vulpes
ENSEEUG00000015181	LSM1	100	69.925	ENSVVUG00000020191	LSM1	100	69.925	Vulpes_vulpes
ENSEEUG00000015181	LSM1	100	67.153	ENSXETG00000009004	lsm1	100	67.153	Xenopus_tropicalis
ENSEEUG00000015181	LSM1	97	76.042	ENSXCOG00000015631	lsm1	72	76.042	Xiphophorus_couchianus
ENSEEUG00000015181	LSM1	97	76.042	ENSXMAG00000026637	lsm1	72	76.042	Xiphophorus_maculatus