EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000000169 (Gene tree)
Gene ID: 105018288
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 41924 bases
Position: chrLG03:29549928-29591851
Accession: 105018288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000028932	XRN_N	PF03159.18	4.6e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000012121	-	6197	XM_010883598	ENSELUP00000028932	1709 (aa)	XP_010881900	UPI000576D661

Gene Model

Click here to download ENSELUG00000000169's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03008	Ribosome biogenesis in eukaryotes	KEGG
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000169's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000169	xrn1	100	61.241	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSELUG00000000169	xrn1	93	82.114	ENSAPOG00000000622	xrn1	100	79.592	Acanthochromis_polyacanthus
ENSELUG00000000169	xrn1	96	62.031	ENSAMEG00000012538	XRN1	100	61.161	Ailuropoda_melanoleuca
ENSELUG00000000169	xrn1	94	80.389	ENSACIG00000001057	xrn1	99	75.635	Amphilophus_citrinellus
ENSELUG00000000169	xrn1	100	72.853	ENSAOCG00000014097	xrn1	100	72.523	Amphiprion_ocellaris
ENSELUG00000000169	xrn1	100	73.022	ENSAPEG00000006620	xrn1	100	73.075	Amphiprion_percula
ENSELUG00000000169	xrn1	97	75.205	ENSATEG00000009752	xrn1	100	74.814	Anabas_testudineus
ENSELUG00000000169	xrn1	99	61.404	ENSAPLG00000004905	XRN1	100	61.460	Anas_platyrhynchos
ENSELUG00000000169	xrn1	100	61.049	ENSACAG00000004985	XRN1	100	61.027	Anolis_carolinensis
ENSELUG00000000169	xrn1	100	61.796	ENSANAG00000029013	XRN1	99	74.492	Aotus_nancymaae
ENSELUG00000000169	xrn1	100	72.362	ENSACLG00000004806	xrn1	99	72.002	Astatotilapia_calliptera
ENSELUG00000000169	xrn1	100	72.245	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSELUG00000000169	xrn1	100	61.061	ENSBTAG00000011524	XRN1	100	60.732	Bos_taurus
ENSELUG00000000169	xrn1	70	38.732	WBGene00012730	xrn-1	73	64.075	Caenorhabditis_elegans
ENSELUG00000000169	xrn1	100	61.810	ENSCJAG00000001872	XRN1	100	62.824	Callithrix_jacchus
ENSELUG00000000169	xrn1	100	60.734	ENSCAFG00000007783	XRN1	100	61.712	Canis_familiaris
ENSELUG00000000169	xrn1	95	62.765	ENSCAFG00020009120	XRN1	99	76.741	Canis_lupus_dingo
ENSELUG00000000169	xrn1	99	61.486	ENSCHIG00000019192	XRN1	99	61.373	Capra_hircus
ENSELUG00000000169	xrn1	100	61.105	ENSTSYG00000002705	XRN1	100	61.538	Carlito_syrichta
ENSELUG00000000169	xrn1	54	61.386	ENSCAPG00000004604	-	99	61.386	Cavia_aperea
ENSELUG00000000169	xrn1	100	61.770	ENSCCAG00000034800	XRN1	99	78.797	Cebus_capucinus
ENSELUG00000000169	xrn1	94	63.450	ENSCATG00000041794	XRN1	100	61.582	Cercocebus_atys
ENSELUG00000000169	xrn1	100	61.738	ENSCLAG00000001451	XRN1	99	78.639	Chinchilla_lanigera
ENSELUG00000000169	xrn1	94	63.196	ENSCSAG00000011265	XRN1	100	61.356	Chlorocebus_sabaeus
ENSELUG00000000169	xrn1	54	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSELUG00000000169	xrn1	69	50.990	ENSCSAVG00000008584	-	94	50.891	Ciona_savignyi
ENSELUG00000000169	xrn1	94	63.516	ENSCANG00000037495	XRN1	99	78.797	Colobus_angolensis_palliatus
ENSELUG00000000169	xrn1	100	61.189	ENSCGRG00001019411	Xrn1	99	78.323	Cricetulus_griseus_chok1gshd
ENSELUG00000000169	xrn1	100	61.189	ENSCGRG00000012464	Xrn1	99	78.323	Cricetulus_griseus_crigri
ENSELUG00000000169	xrn1	100	65.352	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSELUG00000000169	xrn1	66	80.213	ENSCVAG00000013089	xrn1	99	79.769	Cyprinodon_variegatus
ENSELUG00000000169	xrn1	100	74.827	ENSDARG00000091652	xrn1	98	85.624	Danio_rerio
ENSELUG00000000169	xrn1	97	61.869	ENSDORG00000013833	Xrn1	100	61.347	Dipodomys_ordii
ENSELUG00000000169	xrn1	76	38.749	FBgn0020261	pcm	82	37.482	Drosophila_melanogaster
ENSELUG00000000169	xrn1	86	70.270	ENSETEG00000003978	XRN1	88	70.248	Echinops_telfairi
ENSELUG00000000169	xrn1	98	71.210	ENSEASG00005002687	XRN1	99	79.114	Equus_asinus_asinus
ENSELUG00000000169	xrn1	100	61.460	ENSECAG00000008301	XRN1	100	61.517	Equus_caballus
ENSELUG00000000169	xrn1	92	65.986	ENSEEUG00000011323	XRN1	90	66.084	Erinaceus_europaeus
ENSELUG00000000169	xrn1	100	57.769	ENSFCAG00000027589	XRN1	99	81.360	Felis_catus
ENSELUG00000000169	xrn1	100	62.257	ENSFALG00000007021	XRN1	100	62.082	Ficedula_albicollis
ENSELUG00000000169	xrn1	95	62.507	ENSFDAG00000020494	XRN1	99	78.639	Fukomys_damarensis
ENSELUG00000000169	xrn1	87	76.263	ENSGMOG00000006396	xrn1	87	76.411	Gadus_morhua
ENSELUG00000000169	xrn1	100	63.149	ENSGALG00000002706	XRN1	100	63.205	Gallus_gallus
ENSELUG00000000169	xrn1	100	70.328	ENSGACG00000014328	xrn1	100	70.482	Gasterosteus_aculeatus
ENSELUG00000000169	xrn1	94	64.497	ENSGAGG00000017535	XRN1	99	64.159	Gopherus_agassizii
ENSELUG00000000169	xrn1	100	61.521	ENSGGOG00000008047	XRN1	100	61.411	Gorilla_gorilla
ENSELUG00000000169	xrn1	100	70.287	ENSHBUG00000005908	xrn1	95	77.754	Haplochromis_burtoni
ENSELUG00000000169	xrn1	100	61.988	ENSHGLG00000014476	XRN1	99	78.481	Heterocephalus_glaber_female
ENSELUG00000000169	xrn1	100	61.988	ENSHGLG00100015130	XRN1	99	78.481	Heterocephalus_glaber_male
ENSELUG00000000169	xrn1	95	77.976	ENSHCOG00000014062	xrn1	99	77.733	Hippocampus_comes
ENSELUG00000000169	xrn1	100	71.617	ENSIPUG00000015229	xrn1	100	71.674	Ictalurus_punctatus
ENSELUG00000000169	xrn1	100	61.655	ENSSTOG00000013552	XRN1	99	78.639	Ictidomys_tridecemlineatus
ENSELUG00000000169	xrn1	98	59.807	ENSJJAG00000010863	Xrn1	99	78.218	Jaculus_jaculus
ENSELUG00000000169	xrn1	100	68.667	ENSKMAG00000021356	xrn1	95	79.834	Kryptolebias_marmoratus
ENSELUG00000000169	xrn1	100	70.924	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSELUG00000000169	xrn1	99	63.580	ENSLACG00000009020	XRN1	99	63.371	Latimeria_chalumnae
ENSELUG00000000169	xrn1	100	70.588	ENSLOCG00000007944	xrn1	100	70.532	Lepisosteus_oculatus
ENSELUG00000000169	xrn1	61	74.078	ENSLAFG00000015426	XRN1	99	74.227	Loxodonta_africana
ENSELUG00000000169	xrn1	94	63.571	ENSMFAG00000032599	XRN1	100	61.696	Macaca_fascicularis
ENSELUG00000000169	xrn1	94	63.571	ENSMMUG00000014038	XRN1	100	61.696	Macaca_mulatta
ENSELUG00000000169	xrn1	94	63.735	ENSMNEG00000034217	XRN1	100	61.753	Macaca_nemestrina
ENSELUG00000000169	xrn1	94	80.047	ENSMAMG00000013219	xrn1	99	79.547	Mastacembelus_armatus
ENSELUG00000000169	xrn1	100	72.305	ENSMZEG00005015099	xrn1	99	71.945	Maylandia_zebra
ENSELUG00000000169	xrn1	99	60.759	ENSMGAG00000006333	XRN1	100	60.815	Meleagris_gallopavo
ENSELUG00000000169	xrn1	100	61.180	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSELUG00000000169	xrn1	56	78.481	ENSMOCG00000008665	Xrn1	99	78.323	Microtus_ochrogaster
ENSELUG00000000169	xrn1	100	60.599	ENSMODG00000021236	XRN1	100	60.838	Monodelphis_domestica
ENSELUG00000000169	xrn1	100	68.890	ENSMALG00000004098	xrn1	100	69.359	Monopterus_albus
ENSELUG00000000169	xrn1	96	79.393	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSELUG00000000169	xrn1	100	61.258	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSELUG00000000169	xrn1	100	61.478	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSELUG00000000169	xrn1	100	61.274	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSELUG00000000169	xrn1	96	62.904	ENSMPUG00000012040	XRN1	100	61.977	Mustela_putorius_furo
ENSELUG00000000169	xrn1	100	61.029	ENSMLUG00000016885	XRN1	100	61.029	Myotis_lucifugus
ENSELUG00000000169	xrn1	56	74.485	ENSNGAG00000023964	Xrn1	99	74.485	Nannospalax_galili
ENSELUG00000000169	xrn1	94	63.631	ENSNLEG00000004726	XRN1	100	61.626	Nomascus_leucogenys
ENSELUG00000000169	xrn1	64	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSELUG00000000169	xrn1	64	69.784	ENSOPRG00000007337	-	63	69.784	Ochotona_princeps
ENSELUG00000000169	xrn1	100	70.831	ENSONIG00000016673	xrn1	99	75.000	Oreochromis_niloticus
ENSELUG00000000169	xrn1	92	59.440	ENSOANG00000006735	XRN1	99	59.501	Ornithorhynchus_anatinus
ENSELUG00000000169	xrn1	100	60.346	ENSOCUG00000001861	XRN1	100	60.625	Oryctolagus_cuniculus
ENSELUG00000000169	xrn1	100	71.347	ENSORLG00000013005	xrn1	98	71.289	Oryzias_latipes
ENSELUG00000000169	xrn1	100	71.347	ENSORLG00020005559	xrn1	100	71.347	Oryzias_latipes_hni
ENSELUG00000000169	xrn1	100	70.946	ENSORLG00015022523	xrn1	100	70.888	Oryzias_latipes_hsok
ENSELUG00000000169	xrn1	100	71.749	ENSOMEG00000015397	xrn1	99	80.394	Oryzias_melastigma
ENSELUG00000000169	xrn1	100	59.109	ENSOGAG00000000170	XRN1	100	59.502	Otolemur_garnettii
ENSELUG00000000169	xrn1	99	61.278	ENSOARG00000006343	XRN1	99	61.005	Ovis_aries
ENSELUG00000000169	xrn1	100	61.538	ENSPPAG00000010180	XRN1	100	61.446	Pan_paniscus
ENSELUG00000000169	xrn1	100	61.753	ENSPPRG00000007125	XRN1	100	61.870	Panthera_pardus
ENSELUG00000000169	xrn1	100	61.810	ENSPTIG00000021081	XRN1	100	61.926	Panthera_tigris_altaica
ENSELUG00000000169	xrn1	100	61.538	ENSPTRG00000015482	XRN1	100	61.446	Pan_troglodytes
ENSELUG00000000169	xrn1	100	61.538	ENSPANG00000010638	XRN1	100	61.639	Papio_anubis
ENSELUG00000000169	xrn1	100	61.684	ENSPSIG00000018050	XRN1	100	61.642	Pelodiscus_sinensis
ENSELUG00000000169	xrn1	57	82.962	ENSPMGG00000002648	xrn1	99	81.847	Periophthalmus_magnuspinnatus
ENSELUG00000000169	xrn1	56	78.639	ENSPEMG00000020610	Xrn1	99	78.481	Peromyscus_maniculatus_bairdii
ENSELUG00000000169	xrn1	64	51.710	ENSPMAG00000002975	xrn1	90	78.161	Petromyzon_marinus
ENSELUG00000000169	xrn1	89	74.559	ENSPCIG00000028735	XRN1	99	80.032	Phascolarctos_cinereus
ENSELUG00000000169	xrn1	91	73.473	ENSPFOG00000013932	xrn1	99	73.985	Poecilia_formosa
ENSELUG00000000169	xrn1	91	73.708	ENSPLAG00000021653	xrn1	99	73.905	Poecilia_latipinna
ENSELUG00000000169	xrn1	89	73.990	ENSPMEG00000003076	xrn1	95	74.529	Poecilia_mexicana
ENSELUG00000000169	xrn1	100	71.708	ENSPREG00000021147	xrn1	100	71.888	Poecilia_reticulata
ENSELUG00000000169	xrn1	100	61.199	ENSPPYG00000014172	XRN1	100	61.243	Pongo_abelii
ENSELUG00000000169	xrn1	87	61.210	ENSPCAG00000005638	XRN1	96	61.012	Procavia_capensis
ENSELUG00000000169	xrn1	100	61.127	ENSPCOG00000013089	XRN1	99	78.323	Propithecus_coquereli
ENSELUG00000000169	xrn1	85	71.082	ENSPVAG00000016265	XRN1	91	71.082	Pteropus_vampyrus
ENSELUG00000000169	xrn1	100	71.256	ENSPNYG00000010570	xrn1	99	70.970	Pundamilia_nyererei
ENSELUG00000000169	xrn1	100	71.609	ENSPNAG00000023531	xrn1	100	71.379	Pygocentrus_nattereri
ENSELUG00000000169	xrn1	100	60.157	ENSRNOG00000042951	Xrn1	100	60.889	Rattus_norvegicus
ENSELUG00000000169	xrn1	94	63.193	ENSRBIG00000041227	XRN1	100	61.241	Rhinopithecus_bieti
ENSELUG00000000169	xrn1	66	53.533	YGL173C	XRN1	72	53.533	Saccharomyces_cerevisiae
ENSELUG00000000169	xrn1	100	61.652	ENSSBOG00000029561	XRN1	100	61.981	Saimiri_boliviensis_boliviensis
ENSELUG00000000169	xrn1	99	60.971	ENSSHAG00000016207	XRN1	100	60.971	Sarcophilus_harrisii
ENSELUG00000000169	xrn1	100	69.151	ENSSFOG00015024211	xrn1	100	69.129	Scleropages_formosus
ENSELUG00000000169	xrn1	96	77.402	ENSSMAG00000016534	xrn1	100	77.402	Scophthalmus_maximus
ENSELUG00000000169	xrn1	89	81.367	ENSSDUG00000010306	xrn1	98	81.286	Seriola_dumerili
ENSELUG00000000169	xrn1	99	76.316	ENSSLDG00000021543	xrn1	100	76.243	Seriola_lalandi_dorsalis
ENSELUG00000000169	xrn1	60	68.252	ENSSARG00000007741	-	75	68.356	Sorex_araneus
ENSELUG00000000169	xrn1	100	61.993	ENSTGUG00000008498	XRN1	100	61.768	Taeniopygia_guttata
ENSELUG00000000169	xrn1	100	66.609	ENSTRUG00000004895	xrn1	96	79.114	Takifugu_rubripes
ENSELUG00000000169	xrn1	100	66.323	ENSTNIG00000017615	xrn1	100	66.552	Tetraodon_nigroviridis
ENSELUG00000000169	xrn1	76	86.022	ENSTBEG00000003256	XRN1	83	86.022	Tupaia_belangeri
ENSELUG00000000169	xrn1	100	57.850	ENSTTRG00000012914	XRN1	100	58.117	Tursiops_truncatus
ENSELUG00000000169	xrn1	89	71.592	ENSUAMG00000001608	XRN1	99	74.842	Ursus_americanus
ENSELUG00000000169	xrn1	96	62.346	ENSUMAG00000013625	XRN1	100	61.387	Ursus_maritimus
ENSELUG00000000169	xrn1	100	58.937	ENSVPAG00000004690	XRN1	100	59.274	Vicugna_pacos
ENSELUG00000000169	xrn1	99	61.647	ENSVVUG00000024461	XRN1	99	79.114	Vulpes_vulpes
ENSELUG00000000169	xrn1	100	60.977	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSELUG00000000169	xrn1	100	68.639	ENSXCOG00000007917	xrn1	100	68.711	Xiphophorus_couchianus
ENSELUG00000000169	xrn1	96	75.530	ENSXMAG00000018320	xrn1	100	75.606	Xiphophorus_maculatus