EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000000227 (Gene tree)
Gene ID: 105010581
Gene Symbol: smndc1
Alias: SPF30
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 9061 bases
Position: chrLG06:12483876-12492936
Accession: 105010581
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000005943	SMN	PF06003.12	9.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000009789	-	3531	-	ENSELUP00000005943	236 (aa)	-	UPI000575FA48

Gene Model

Click here to download ENSELUG00000000227's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000227	smndc1	100	78.151	ENSG00000119953	SMNDC1	100	78.151	Homo_sapiens
ENSELUG00000000227	smndc1	100	84.034	ENSAPOG00000021772	smndc1	100	84.034	Acanthochromis_polyacanthus
ENSELUG00000000227	smndc1	100	77.731	ENSAMEG00000005251	SMNDC1	100	77.731	Ailuropoda_melanoleuca
ENSELUG00000000227	smndc1	100	84.874	ENSACIG00000004819	smndc1	100	84.874	Amphilophus_citrinellus
ENSELUG00000000227	smndc1	100	82.773	ENSAOCG00000017869	smndc1	100	82.773	Amphiprion_ocellaris
ENSELUG00000000227	smndc1	100	82.773	ENSAPEG00000007752	smndc1	100	82.773	Amphiprion_percula
ENSELUG00000000227	smndc1	100	84.034	ENSATEG00000006830	smndc1	100	84.034	Anabas_testudineus
ENSELUG00000000227	smndc1	83	77.273	ENSAPLG00000004322	SMNDC1	100	77.273	Anas_platyrhynchos
ENSELUG00000000227	smndc1	100	78.151	ENSACAG00000005983	SMNDC1	100	78.151	Anolis_carolinensis
ENSELUG00000000227	smndc1	100	77.731	ENSANAG00000032875	SMNDC1	100	77.731	Aotus_nancymaae
ENSELUG00000000227	smndc1	100	83.613	ENSACLG00000016360	smndc1	100	83.613	Astatotilapia_calliptera
ENSELUG00000000227	smndc1	100	83.122	ENSAMXG00000020310	smndc1	100	83.122	Astyanax_mexicanus
ENSELUG00000000227	smndc1	100	77.311	ENSBTAG00000000551	SMNDC1	100	77.311	Bos_taurus
ENSELUG00000000227	smndc1	100	77.731	ENSCJAG00000018624	SMNDC1	100	77.731	Callithrix_jacchus
ENSELUG00000000227	smndc1	100	77.731	ENSCAFG00000010720	SMNDC1	100	77.731	Canis_familiaris
ENSELUG00000000227	smndc1	100	77.731	ENSCAFG00020011913	SMNDC1	100	77.731	Canis_lupus_dingo
ENSELUG00000000227	smndc1	100	77.311	ENSCHIG00000010604	SMNDC1	100	77.311	Capra_hircus
ENSELUG00000000227	smndc1	100	78.151	ENSTSYG00000026454	SMNDC1	100	78.151	Carlito_syrichta
ENSELUG00000000227	smndc1	100	63.750	ENSCAPG00000009132	SMNDC1	100	74.129	Cavia_aperea
ENSELUG00000000227	smndc1	100	77.311	ENSCPOG00000031666	SMNDC1	100	77.311	Cavia_porcellus
ENSELUG00000000227	smndc1	100	77.731	ENSCCAG00000021793	SMNDC1	100	77.731	Cebus_capucinus
ENSELUG00000000227	smndc1	100	77.311	ENSCATG00000035910	SMNDC1	100	77.311	Cercocebus_atys
ENSELUG00000000227	smndc1	100	77.311	ENSCLAG00000002838	SMNDC1	100	77.311	Chinchilla_lanigera
ENSELUG00000000227	smndc1	100	77.731	ENSCSAG00000005169	SMNDC1	100	77.731	Chlorocebus_sabaeus
ENSELUG00000000227	smndc1	81	74.093	ENSCHOG00000002936	SMNDC1	100	74.093	Choloepus_hoffmanni
ENSELUG00000000227	smndc1	100	78.571	ENSCPBG00000012837	SMNDC1	100	78.571	Chrysemys_picta_bellii
ENSELUG00000000227	smndc1	100	61.017	ENSCANG00000036994	-	100	61.017	Colobus_angolensis_palliatus
ENSELUG00000000227	smndc1	100	77.731	ENSCANG00000031720	-	100	77.731	Colobus_angolensis_palliatus
ENSELUG00000000227	smndc1	100	71.849	ENSCANG00000034620	-	100	71.849	Colobus_angolensis_palliatus
ENSELUG00000000227	smndc1	100	77.311	ENSCGRG00001012973	Smndc1	100	77.311	Cricetulus_griseus_chok1gshd
ENSELUG00000000227	smndc1	100	77.311	ENSCGRG00000012396	Smndc1	100	77.311	Cricetulus_griseus_crigri
ENSELUG00000000227	smndc1	100	83.051	ENSCSEG00000015621	smndc1	100	83.051	Cynoglossus_semilaevis
ENSELUG00000000227	smndc1	100	82.773	ENSCVAG00000020432	smndc1	100	82.773	Cyprinodon_variegatus
ENSELUG00000000227	smndc1	100	81.857	ENSDARG00000056235	smndc1	100	81.857	Danio_rerio
ENSELUG00000000227	smndc1	100	77.731	ENSDNOG00000016387	SMNDC1	83	77.731	Dasypus_novemcinctus
ENSELUG00000000227	smndc1	100	77.731	ENSDORG00000023715	Smndc1	100	77.731	Dipodomys_ordii
ENSELUG00000000227	smndc1	93	42.387	FBgn0039977	CG17454	98	43.348	Drosophila_melanogaster
ENSELUG00000000227	smndc1	100	64.315	ENSEBUG00000010929	smndc1	100	65.975	Eptatretus_burgeri
ENSELUG00000000227	smndc1	100	77.731	ENSEASG00005014930	SMNDC1	100	77.731	Equus_asinus_asinus
ENSELUG00000000227	smndc1	100	77.731	ENSECAG00000029973	SMNDC1	100	77.731	Equus_caballus
ENSELUG00000000227	smndc1	61	84.375	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSELUG00000000227	smndc1	100	77.731	ENSFCAG00000027353	SMNDC1	100	77.731	Felis_catus
ENSELUG00000000227	smndc1	100	78.151	ENSFALG00000002306	SMNDC1	100	78.151	Ficedula_albicollis
ENSELUG00000000227	smndc1	100	77.731	ENSFDAG00000006468	SMNDC1	100	77.731	Fukomys_damarensis
ENSELUG00000000227	smndc1	100	84.454	ENSFHEG00000020150	smndc1	100	84.454	Fundulus_heteroclitus
ENSELUG00000000227	smndc1	100	85.169	ENSGMOG00000016585	smndc1	100	85.169	Gadus_morhua
ENSELUG00000000227	smndc1	100	78.151	ENSGALG00000008561	SMNDC1	100	78.151	Gallus_gallus
ENSELUG00000000227	smndc1	100	81.513	ENSGAFG00000011582	smndc1	100	81.513	Gambusia_affinis
ENSELUG00000000227	smndc1	100	85.714	ENSGACG00000009468	smndc1	100	85.714	Gasterosteus_aculeatus
ENSELUG00000000227	smndc1	100	78.571	ENSGAGG00000024547	SMNDC1	100	78.571	Gopherus_agassizii
ENSELUG00000000227	smndc1	100	77.731	ENSGGOG00000010071	SMNDC1	100	77.731	Gorilla_gorilla
ENSELUG00000000227	smndc1	100	83.613	ENSHBUG00000017596	smndc1	100	83.613	Haplochromis_burtoni
ENSELUG00000000227	smndc1	100	55.785	ENSHGLG00000001157	-	100	56.612	Heterocephalus_glaber_female
ENSELUG00000000227	smndc1	100	77.731	ENSHGLG00000013390	-	100	77.731	Heterocephalus_glaber_female
ENSELUG00000000227	smndc1	100	60.331	ENSHGLG00100004278	-	100	59.677	Heterocephalus_glaber_male
ENSELUG00000000227	smndc1	100	77.731	ENSHGLG00100004814	-	100	77.731	Heterocephalus_glaber_male
ENSELUG00000000227	smndc1	100	80.335	ENSHCOG00000000783	smndc1	100	80.335	Hippocampus_comes
ENSELUG00000000227	smndc1	100	86.076	ENSIPUG00000004217	smndc1	100	86.076	Ictalurus_punctatus
ENSELUG00000000227	smndc1	100	78.151	ENSSTOG00000006088	SMNDC1	100	78.151	Ictidomys_tridecemlineatus
ENSELUG00000000227	smndc1	100	77.311	ENSJJAG00000019974	Smndc1	100	77.311	Jaculus_jaculus
ENSELUG00000000227	smndc1	100	83.613	ENSKMAG00000020134	smndc1	100	83.613	Kryptolebias_marmoratus
ENSELUG00000000227	smndc1	100	83.122	ENSLBEG00000004598	smndc1	100	83.122	Labrus_bergylta
ENSELUG00000000227	smndc1	100	76.050	ENSLACG00000007784	SMNDC1	100	76.050	Latimeria_chalumnae
ENSELUG00000000227	smndc1	100	84.810	ENSLOCG00000012355	smndc1	100	84.810	Lepisosteus_oculatus
ENSELUG00000000227	smndc1	100	77.311	ENSLAFG00000014353	SMNDC1	100	77.311	Loxodonta_africana
ENSELUG00000000227	smndc1	100	77.731	ENSMFAG00000002433	-	100	77.731	Macaca_fascicularis
ENSELUG00000000227	smndc1	100	64.831	ENSMFAG00000038381	-	100	64.831	Macaca_fascicularis
ENSELUG00000000227	smndc1	100	77.731	ENSMMUG00000007775	SMNDC1	100	77.731	Macaca_mulatta
ENSELUG00000000227	smndc1	100	64.831	ENSMMUG00000045875	-	100	64.831	Macaca_mulatta
ENSELUG00000000227	smndc1	100	77.731	ENSMNEG00000042963	-	100	77.731	Macaca_nemestrina
ENSELUG00000000227	smndc1	100	69.328	ENSMNEG00000033853	-	100	68.487	Macaca_nemestrina
ENSELUG00000000227	smndc1	100	71.730	ENSMLEG00000040236	SMNDC1	100	72.574	Mandrillus_leucophaeus
ENSELUG00000000227	smndc1	89	83.099	ENSMAMG00000018233	smndc1	87	83.099	Mastacembelus_armatus
ENSELUG00000000227	smndc1	100	83.613	ENSMZEG00005027510	smndc1	100	83.613	Maylandia_zebra
ENSELUG00000000227	smndc1	97	70.000	ENSMGAG00000010777	SMNDC1	97	70.000	Meleagris_gallopavo
ENSELUG00000000227	smndc1	99	64.255	ENSMAUG00000005459	-	93	64.135	Mesocricetus_auratus
ENSELUG00000000227	smndc1	100	77.731	ENSMAUG00000012243	-	100	77.731	Mesocricetus_auratus
ENSELUG00000000227	smndc1	100	67.511	ENSMICG00000031640	-	100	67.511	Microcebus_murinus
ENSELUG00000000227	smndc1	100	76.891	ENSMICG00000027336	-	100	76.891	Microcebus_murinus
ENSELUG00000000227	smndc1	100	77.311	ENSMOCG00000002458	Smndc1	100	77.311	Microtus_ochrogaster
ENSELUG00000000227	smndc1	100	82.773	ENSMMOG00000008856	smndc1	100	82.773	Mola_mola
ENSELUG00000000227	smndc1	100	78.571	ENSMODG00000010542	SMNDC1	100	78.571	Monodelphis_domestica
ENSELUG00000000227	smndc1	100	84.454	ENSMALG00000017598	smndc1	100	84.454	Monopterus_albus
ENSELUG00000000227	smndc1	100	77.311	MGP_CAROLIEiJ_G0023072	Smndc1	100	77.311	Mus_caroli
ENSELUG00000000227	smndc1	100	77.731	ENSMUSG00000025024	Smndc1	100	77.731	Mus_musculus
ENSELUG00000000227	smndc1	100	78.151	MGP_PahariEiJ_G0014560	Smndc1	100	78.151	Mus_pahari
ENSELUG00000000227	smndc1	100	77.731	MGP_SPRETEiJ_G0023993	Smndc1	100	77.731	Mus_spretus
ENSELUG00000000227	smndc1	100	77.731	ENSMPUG00000002089	SMNDC1	100	77.731	Mustela_putorius_furo
ENSELUG00000000227	smndc1	100	77.731	ENSMLUG00000016007	SMNDC1	100	77.731	Myotis_lucifugus
ENSELUG00000000227	smndc1	100	77.311	ENSNGAG00000006833	Smndc1	100	77.311	Nannospalax_galili
ENSELUG00000000227	smndc1	100	84.034	ENSNBRG00000017089	smndc1	100	84.034	Neolamprologus_brichardi
ENSELUG00000000227	smndc1	100	77.731	ENSNLEG00000015471	SMNDC1	100	77.731	Nomascus_leucogenys
ENSELUG00000000227	smndc1	82	53.535	ENSMEUG00000010120	-	98	54.592	Notamacropus_eugenii
ENSELUG00000000227	smndc1	100	77.311	ENSOPRG00000015348	SMNDC1	100	77.311	Ochotona_princeps
ENSELUG00000000227	smndc1	100	56.780	ENSODEG00000007594	-	100	53.814	Octodon_degus
ENSELUG00000000227	smndc1	100	84.034	ENSONIG00000000434	smndc1	100	84.034	Oreochromis_niloticus
ENSELUG00000000227	smndc1	100	78.571	ENSOANG00000001598	SMNDC1	100	78.571	Ornithorhynchus_anatinus
ENSELUG00000000227	smndc1	100	58.650	ENSOCUG00000012274	-	100	60.338	Oryctolagus_cuniculus
ENSELUG00000000227	smndc1	100	76.891	ENSOCUG00000008145	-	100	76.891	Oryctolagus_cuniculus
ENSELUG00000000227	smndc1	100	80.252	ENSORLG00000005934	smndc1	95	80.252	Oryzias_latipes
ENSELUG00000000227	smndc1	100	80.252	ENSORLG00020008796	smndc1	95	80.252	Oryzias_latipes_hni
ENSELUG00000000227	smndc1	100	80.252	ENSORLG00015013666	smndc1	100	80.252	Oryzias_latipes_hsok
ENSELUG00000000227	smndc1	100	78.481	ENSOMEG00000007590	smndc1	100	78.481	Oryzias_melastigma
ENSELUG00000000227	smndc1	100	77.311	ENSOGAG00000000571	SMNDC1	100	77.311	Otolemur_garnettii
ENSELUG00000000227	smndc1	100	77.311	ENSOARG00000009500	SMNDC1	100	77.311	Ovis_aries
ENSELUG00000000227	smndc1	100	77.731	ENSPPAG00000027815	SMNDC1	100	77.731	Pan_paniscus
ENSELUG00000000227	smndc1	100	77.731	ENSPPRG00000013749	SMNDC1	100	77.731	Panthera_pardus
ENSELUG00000000227	smndc1	100	77.731	ENSPTIG00000011451	SMNDC1	100	77.731	Panthera_tigris_altaica
ENSELUG00000000227	smndc1	100	77.731	ENSPTRG00000002937	SMNDC1	100	77.731	Pan_troglodytes
ENSELUG00000000227	smndc1	100	77.731	ENSPANG00000020805	-	100	77.731	Papio_anubis
ENSELUG00000000227	smndc1	100	74.153	ENSPANG00000031346	-	100	74.153	Papio_anubis
ENSELUG00000000227	smndc1	100	81.013	ENSPKIG00000017164	smndc1	100	81.013	Paramormyrops_kingsleyae
ENSELUG00000000227	smndc1	100	78.992	ENSPSIG00000012257	SMNDC1	100	78.992	Pelodiscus_sinensis
ENSELUG00000000227	smndc1	100	80.085	ENSPMGG00000015651	smndc1	100	80.085	Periophthalmus_magnuspinnatus
ENSELUG00000000227	smndc1	100	77.731	ENSPEMG00000022058	Smndc1	100	77.731	Peromyscus_maniculatus_bairdii
ENSELUG00000000227	smndc1	100	65.306	ENSPMAG00000007705	smndc1	100	65.306	Petromyzon_marinus
ENSELUG00000000227	smndc1	100	78.571	ENSPCIG00000018419	SMNDC1	100	78.571	Phascolarctos_cinereus
ENSELUG00000000227	smndc1	97	58.079	ENSPCIG00000009693	-	100	58.079	Phascolarctos_cinereus
ENSELUG00000000227	smndc1	100	81.933	ENSPFOG00000017113	smndc1	100	81.933	Poecilia_formosa
ENSELUG00000000227	smndc1	100	81.513	ENSPLAG00000010372	smndc1	100	81.513	Poecilia_latipinna
ENSELUG00000000227	smndc1	100	82.353	ENSPMEG00000012288	smndc1	100	82.353	Poecilia_mexicana
ENSELUG00000000227	smndc1	100	81.513	ENSPREG00000012279	smndc1	100	81.513	Poecilia_reticulata
ENSELUG00000000227	smndc1	100	77.731	ENSPPYG00000002643	SMNDC1	100	77.731	Pongo_abelii
ENSELUG00000000227	smndc1	81	73.057	ENSPCAG00000016183	SMNDC1	100	73.057	Procavia_capensis
ENSELUG00000000227	smndc1	100	77.311	ENSPCOG00000024343	SMNDC1	100	77.311	Propithecus_coquereli
ENSELUG00000000227	smndc1	78	87.500	ENSPVAG00000004368	SMNDC1	100	61.345	Pteropus_vampyrus
ENSELUG00000000227	smndc1	83	83.333	ENSPNYG00000024093	smndc1	86	83.333	Pundamilia_nyererei
ENSELUG00000000227	smndc1	100	85.232	ENSPNAG00000025285	smndc1	100	85.232	Pygocentrus_nattereri
ENSELUG00000000227	smndc1	100	77.311	ENSRNOG00000014833	Smndc1	100	77.311	Rattus_norvegicus
ENSELUG00000000227	smndc1	100	77.311	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSELUG00000000227	smndc1	100	63.983	ENSRBIG00000032452	-	100	63.136	Rhinopithecus_bieti
ENSELUG00000000227	smndc1	100	77.731	ENSRROG00000044992	-	100	77.731	Rhinopithecus_roxellana
ENSELUG00000000227	smndc1	100	64.407	ENSRROG00000039125	-	100	63.559	Rhinopithecus_roxellana
ENSELUG00000000227	smndc1	100	77.731	ENSSBOG00000026789	SMNDC1	100	77.731	Saimiri_boliviensis_boliviensis
ENSELUG00000000227	smndc1	100	78.571	ENSSHAG00000015189	SMNDC1	100	78.571	Sarcophilus_harrisii
ENSELUG00000000227	smndc1	100	82.278	ENSSFOG00015008311	smndc1	100	82.278	Scleropages_formosus
ENSELUG00000000227	smndc1	100	84.874	ENSSMAG00000020118	smndc1	100	84.874	Scophthalmus_maximus
ENSELUG00000000227	smndc1	100	86.134	ENSSDUG00000015330	smndc1	100	86.134	Seriola_dumerili
ENSELUG00000000227	smndc1	100	86.555	ENSSLDG00000017325	smndc1	100	86.555	Seriola_lalandi_dorsalis
ENSELUG00000000227	smndc1	100	77.311	ENSSARG00000006063	SMNDC1	100	77.311	Sorex_araneus
ENSELUG00000000227	smndc1	100	78.571	ENSSPUG00000004574	SMNDC1	100	78.571	Sphenodon_punctatus
ENSELUG00000000227	smndc1	100	83.613	ENSSPAG00000000338	smndc1	100	83.613	Stegastes_partitus
ENSELUG00000000227	smndc1	100	77.731	ENSSSCG00000030507	SMNDC1	100	77.731	Sus_scrofa
ENSELUG00000000227	smndc1	100	78.151	ENSTGUG00000010599	SMNDC1	100	78.151	Taeniopygia_guttata
ENSELUG00000000227	smndc1	100	78.992	ENSTRUG00000023281	smndc1	100	78.992	Takifugu_rubripes
ENSELUG00000000227	smndc1	100	78.571	ENSTNIG00000013331	smndc1	100	78.571	Tetraodon_nigroviridis
ENSELUG00000000227	smndc1	100	77.311	ENSTBEG00000014337	SMNDC1	100	77.311	Tupaia_belangeri
ENSELUG00000000227	smndc1	100	77.731	ENSUAMG00000008142	SMNDC1	100	77.731	Ursus_americanus
ENSELUG00000000227	smndc1	100	77.731	ENSUMAG00000023722	SMNDC1	100	77.731	Ursus_maritimus
ENSELUG00000000227	smndc1	83	76.768	ENSVPAG00000003402	SMNDC1	100	76.768	Vicugna_pacos
ENSELUG00000000227	smndc1	100	77.731	ENSVVUG00000007820	SMNDC1	100	77.731	Vulpes_vulpes
ENSELUG00000000227	smndc1	57	69.403	ENSXETG00000015415	SMNDC1	94	69.403	Xenopus_tropicalis
ENSELUG00000000227	smndc1	100	82.203	ENSXCOG00000009159	smndc1	100	82.203	Xiphophorus_couchianus
ENSELUG00000000227	smndc1	100	82.353	ENSXMAG00000012755	smndc1	100	82.353	Xiphophorus_maculatus