EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000000497 (Gene tree)
Gene ID: 105022669
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 12184 bases
Position: chrLG03:11180624-11192807
Accession: 105022661
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000013286	LSM	PF01423.22	2.8e-21	1	1
ENSELUP00000013270	LSM	PF01423.22	4.9e-21	1	1
ENSELUP00000034741	LSM	PF01423.22	2.4e-15	1	1
ENSELUP00000013238	RIO1	PF01163.22	5.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000021779	-	2289	-	ENSELUP00000013286	111 (aa)	-	C1BZQ2
ENSELUT00000021724	-	3748	XM_010891306	ENSELUP00000013238	501 (aa)	XP_010889608	UPI0009734850
ENSELUT00000021761	-	1158	-	ENSELUP00000013270	140 (aa)	-	-
ENSELUT00000021938	-	1413	-	ENSELUP00000034741	105 (aa)	-	-

Gene Model

Click here to download ENSELUG00000000497's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG
els03040	Spliceosome	KEGG
els04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000497's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000000497	lsm7	64	39.437	ENSELUG00000013944	snrpg	83	39.437
ENSELUG00000000497	lsm7	60	69.256	ENSELUG00000003738	dapk2b	90	69.707
ENSELUG00000000497	lsm7	67	35.526	ENSELUG00000010138	lsm8	73	35.526
ENSELUG00000000497	lsm7	54	41.697	ENSELUG00000008588	camk1b	68	41.697

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000497	lsm7	55	84.783	ENSG00000196730	DAPK1	98	81.081	Homo_sapiens
ENSELUG00000000497	lsm7	89	63.288	ENSG00000035664	DAPK2	88	75.714	Homo_sapiens
ENSELUG00000000497	lsm7	60	74.675	ENSAPOG00000006757	dapk2b	85	74.675	Acanthochromis_polyacanthus
ENSELUG00000000497	lsm7	60	72.078	ENSACIG00000002463	dapk2b	84	72.078	Amphilophus_citrinellus
ENSELUG00000000497	lsm7	88	63.431	ENSAOCG00000005331	-	85	74.675	Amphiprion_ocellaris
ENSELUG00000000497	lsm7	60	74.675	ENSAPEG00000019722	dapk2b	85	74.675	Amphiprion_percula
ENSELUG00000000497	lsm7	90	90.529	ENSATEG00000021989	-	100	90.529	Anabas_testudineus
ENSELUG00000000497	lsm7	62	71.698	ENSATEG00000007816	dapk2b	89	71.698	Anabas_testudineus
ENSELUG00000000497	lsm7	55	85.145	ENSANAG00000032154	DAPK1	92	81.818	Aotus_nancymaae
ENSELUG00000000497	lsm7	60	73.786	ENSANAG00000025796	DAPK2	84	73.786	Aotus_nancymaae
ENSELUG00000000497	lsm7	89	91.928	ENSACLG00000011302	-	98	91.928	Astatotilapia_calliptera
ENSELUG00000000497	lsm7	87	64.612	ENSAMXG00000010743	dapk2a	89	64.612	Astyanax_mexicanus
ENSELUG00000000497	lsm7	59	73.529	ENSAMXG00000038379	dapk2b	82	73.529	Astyanax_mexicanus
ENSELUG00000000497	lsm7	55	77.899	ENSAMXG00000012193	dapk1	90	77.297	Astyanax_mexicanus
ENSELUG00000000497	lsm7	88	89.977	ENSAMXG00000040439	-	97	89.977	Astyanax_mexicanus
ENSELUG00000000497	lsm7	89	63.739	ENSCJAG00000004806	DAPK2	83	74.026	Callithrix_jacchus
ENSELUG00000000497	lsm7	59	74.587	ENSCAFG00020009392	DAPK2	82	74.587	Canis_lupus_dingo
ENSELUG00000000497	lsm7	60	69.481	ENSCHIG00000002285	DAPK2	82	69.481	Capra_hircus
ENSELUG00000000497	lsm7	87	64.384	ENSTSYG00000012419	DAPK2	82	74.587	Carlito_syrichta
ENSELUG00000000497	lsm7	60	64.194	ENSCAPG00000008062	DAPK2	83	65.484	Cavia_aperea
ENSELUG00000000497	lsm7	52	91.538	ENSCAPG00000010131	-	100	91.538	Cavia_aperea
ENSELUG00000000497	lsm7	60	72.403	ENSCPOG00000000890	DAPK2	84	72.403	Cavia_porcellus
ENSELUG00000000497	lsm7	89	63.288	ENSCCAG00000026794	DAPK2	82	74.587	Cebus_capucinus
ENSELUG00000000497	lsm7	89	63.739	ENSCATG00000043801	DAPK2	82	74.587	Cercocebus_atys
ENSELUG00000000497	lsm7	60	73.052	ENSCLAG00000013163	DAPK2	83	73.052	Chinchilla_lanigera
ENSELUG00000000497	lsm7	89	63.964	ENSCANG00000039986	DAPK2	82	74.587	Colobus_angolensis_palliatus
ENSELUG00000000497	lsm7	59	74.257	ENSCGRG00001014149	Dapk2	82	74.257	Cricetulus_griseus_chok1gshd
ENSELUG00000000497	lsm7	59	74.257	ENSCGRG00000013909	Dapk2	82	74.257	Cricetulus_griseus_crigri
ENSELUG00000000497	lsm7	56	87.143	ENSCGRG00000002758	-	92	87.143	Cricetulus_griseus_crigri
ENSELUG00000000497	lsm7	89	63.063	ENSCSEG00000002398	dapk2b	96	63.063	Cynoglossus_semilaevis
ENSELUG00000000497	lsm7	90	90.265	ENSCSEG00000014457	-	97	90.265	Cynoglossus_semilaevis
ENSELUG00000000497	lsm7	88	64.626	ENSCVAG00000022652	dapk2a	89	64.626	Cyprinodon_variegatus
ENSELUG00000000497	lsm7	60	74.675	ENSCVAG00000021743	dapk2b	85	74.675	Cyprinodon_variegatus
ENSELUG00000000497	lsm7	62	70.662	ENSDARG00000103666	dapk2b	86	70.662	Danio_rerio
ENSELUG00000000497	lsm7	87	65.982	ENSDARG00000061096	dapk2a	90	65.982	Danio_rerio
ENSELUG00000000497	lsm7	55	90.217	ENSDORG00000012226	-	100	90.217	Dipodomys_ordii
ENSELUG00000000497	lsm7	59	73.267	ENSETEG00000001356	DAPK2	83	73.267	Echinops_telfairi
ENSELUG00000000497	lsm7	54	62.868	ENSEBUG00000004869	-	69	62.868	Eptatretus_burgeri
ENSELUG00000000497	lsm7	89	64.189	ENSFCAG00000004177	DAPK2	82	74.917	Felis_catus
ENSELUG00000000497	lsm7	55	90.614	ENSFDAG00000015227	-	74	90.614	Fukomys_damarensis
ENSELUG00000000497	lsm7	60	74.351	ENSFHEG00000001863	dapk2b	85	74.351	Fundulus_heteroclitus
ENSELUG00000000497	lsm7	55	80.435	ENSFHEG00000022183	dapk1	95	77.297	Fundulus_heteroclitus
ENSELUG00000000497	lsm7	89	83.857	ENSGALG00000037733	-	98	83.857	Gallus_gallus
ENSELUG00000000497	lsm7	60	75.325	ENSGAFG00000020656	dapk2b	85	75.325	Gambusia_affinis
ENSELUG00000000497	lsm7	88	61.991	ENSGACG00000010201	dapk2b	98	61.851	Gasterosteus_aculeatus
ENSELUG00000000497	lsm7	87	66.059	ENSGACG00000017307	dapk2a	96	66.059	Gasterosteus_aculeatus
ENSELUG00000000497	lsm7	89	63.063	ENSGGOG00000016537	-	83	74.026	Gorilla_gorilla
ENSELUG00000000497	lsm7	60	72.403	ENSHGLG00000013578	DAPK2	84	72.403	Heterocephalus_glaber_female
ENSELUG00000000497	lsm7	60	72.403	ENSHGLG00100013869	DAPK2	83	72.403	Heterocephalus_glaber_male
ENSELUG00000000497	lsm7	65	66.055	ENSHCOG00000015155	-	88	66.055	Hippocampus_comes
ENSELUG00000000497	lsm7	89	90.359	ENSHCOG00000000788	-	99	90.359	Hippocampus_comes
ENSELUG00000000497	lsm7	60	72.727	ENSHCOG00000013506	dapk2b	85	72.727	Hippocampus_comes
ENSELUG00000000497	lsm7	60	74.267	ENSIPUG00000021663	dapk2	83	74.267	Ictalurus_punctatus
ENSELUG00000000497	lsm7	88	87.330	ENSIPUG00000014879	DAPK3	97	87.330	Ictalurus_punctatus
ENSELUG00000000497	lsm7	60	74.026	ENSSTOG00000016080	DAPK2	83	74.026	Ictidomys_tridecemlineatus
ENSELUG00000000497	lsm7	60	70.779	ENSJJAG00000017017	Dapk2	83	70.779	Jaculus_jaculus
ENSELUG00000000497	lsm7	83	61.391	ENSKMAG00000018440	dapk2b	77	76.157	Kryptolebias_marmoratus
ENSELUG00000000497	lsm7	60	72.403	ENSLBEG00000017027	dapk2b	85	72.403	Labrus_bergylta
ENSELUG00000000497	lsm7	55	80.797	ENSLOCG00000014848	dapk2b	76	80.797	Lepisosteus_oculatus
ENSELUG00000000497	lsm7	60	72.727	ENSLAFG00000000338	DAPK2	85	72.727	Loxodonta_africana
ENSELUG00000000497	lsm7	89	63.739	ENSMFAG00000028166	DAPK2	82	74.587	Macaca_fascicularis
ENSELUG00000000497	lsm7	59	74.587	ENSMMUG00000018177	DAPK2	82	74.587	Macaca_mulatta
ENSELUG00000000497	lsm7	89	64.640	ENSMNEG00000037814	DAPK2	82	75.908	Macaca_nemestrina
ENSELUG00000000497	lsm7	89	63.739	ENSMLEG00000033599	DAPK2	82	74.587	Mandrillus_leucophaeus
ENSELUG00000000497	lsm7	60	74.351	ENSMAMG00000007325	dapk2b	85	74.351	Mastacembelus_armatus
ENSELUG00000000497	lsm7	89	92.152	ENSMAMG00000002171	-	98	92.152	Mastacembelus_armatus
ENSELUG00000000497	lsm7	89	92.152	ENSMZEG00005024465	-	98	92.152	Maylandia_zebra
ENSELUG00000000497	lsm7	51	81.102	ENSMGAG00000003962	DAPK2	100	81.102	Meleagris_gallopavo
ENSELUG00000000497	lsm7	59	74.257	ENSMAUG00000018956	Dapk2	82	74.257	Mesocricetus_auratus
ENSELUG00000000497	lsm7	55	84.058	ENSMICG00000017284	DAPK1	98	79.459	Microcebus_murinus
ENSELUG00000000497	lsm7	89	62.584	ENSMICG00000011065	DAPK2	74	79.636	Microcebus_murinus
ENSELUG00000000497	lsm7	59	74.257	ENSMOCG00000014779	Dapk2	82	74.257	Microtus_ochrogaster
ENSELUG00000000497	lsm7	60	75.000	ENSMMOG00000003023	dapk2b	76	75.000	Mola_mola
ENSELUG00000000497	lsm7	89	62.472	ENSMODG00000010926	DAPK2	90	62.472	Monodelphis_domestica
ENSELUG00000000497	lsm7	89	91.480	ENSMALG00000018692	-	98	91.480	Monopterus_albus
ENSELUG00000000497	lsm7	60	74.026	ENSMALG00000008825	dapk2b	85	74.026	Monopterus_albus
ENSELUG00000000497	lsm7	59	74.587	MGP_CAROLIEiJ_G0032377	Dapk2	82	74.587	Mus_caroli
ENSELUG00000000497	lsm7	59	74.587	ENSMUSG00000032380	Dapk2	82	74.587	Mus_musculus
ENSELUG00000000497	lsm7	59	74.587	MGP_PahariEiJ_G0015242	Dapk2	82	74.587	Mus_pahari
ENSELUG00000000497	lsm7	59	74.587	MGP_SPRETEiJ_G0033516	Dapk2	82	74.587	Mus_spretus
ENSELUG00000000497	lsm7	60	74.351	ENSMPUG00000000608	DAPK2	78	74.351	Mustela_putorius_furo
ENSELUG00000000497	lsm7	89	91.928	ENSNBRG00000011614	-	98	91.928	Neolamprologus_brichardi
ENSELUG00000000497	lsm7	90	62.306	ENSNLEG00000012381	-	83	74.026	Nomascus_leucogenys
ENSELUG00000000497	lsm7	89	92.152	ENSONIG00000018617	-	98	92.152	Oreochromis_niloticus
ENSELUG00000000497	lsm7	60	74.026	ENSOCUG00000000435	DAPK2	84	74.026	Oryctolagus_cuniculus
ENSELUG00000000497	lsm7	89	90.402	ENSORLG00000017965	-	96	90.402	Oryzias_latipes
ENSELUG00000000497	lsm7	60	73.377	ENSORLG00000007399	dapk2b	85	73.377	Oryzias_latipes
ENSELUG00000000497	lsm7	86	60.000	ENSORLG00020006496	dapk2b	85	73.377	Oryzias_latipes_hni
ENSELUG00000000497	lsm7	89	90.625	ENSORLG00020004064	-	96	90.625	Oryzias_latipes_hni
ENSELUG00000000497	lsm7	60	73.701	ENSORLG00015020580	dapk2b	85	73.701	Oryzias_latipes_hsok
ENSELUG00000000497	lsm7	54	75.824	ENSORLG00015010313	DAPK2	81	75.824	Oryzias_latipes_hsok
ENSELUG00000000497	lsm7	89	90.625	ENSORLG00015003938	-	96	90.625	Oryzias_latipes_hsok
ENSELUG00000000497	lsm7	89	63.739	ENSOGAG00000027766	DAPK2	92	63.739	Otolemur_garnettii
ENSELUG00000000497	lsm7	60	74.026	ENSPPAG00000036415	DAPK2	83	74.026	Pan_paniscus
ENSELUG00000000497	lsm7	89	64.189	ENSPPRG00000007000	DAPK2	82	74.917	Panthera_pardus
ENSELUG00000000497	lsm7	89	64.189	ENSPTIG00000020724	DAPK2	82	74.917	Panthera_tigris_altaica
ENSELUG00000000497	lsm7	89	63.288	ENSPTRG00000007152	DAPK2	83	74.026	Pan_troglodytes
ENSELUG00000000497	lsm7	89	63.739	ENSPANG00000016876	DAPK2	82	74.587	Papio_anubis
ENSELUG00000000497	lsm7	56	77.385	ENSPKIG00000000674	DAPK2	78	77.113	Paramormyrops_kingsleyae
ENSELUG00000000497	lsm7	90	85.301	ENSPKIG00000005889	-	99	85.301	Paramormyrops_kingsleyae
ENSELUG00000000497	lsm7	57	76.224	ENSPSIG00000015800	DAPK2	68	76.224	Pelodiscus_sinensis
ENSELUG00000000497	lsm7	60	70.588	ENSPMGG00000004055	dapk2b	89	70.588	Periophthalmus_magnuspinnatus
ENSELUG00000000497	lsm7	71	79.944	ENSPEMG00000020977	-	97	79.944	Peromyscus_maniculatus_bairdii
ENSELUG00000000497	lsm7	59	74.257	ENSPEMG00000020347	Dapk2	82	74.257	Peromyscus_maniculatus_bairdii
ENSELUG00000000497	lsm7	51	71.429	ENSPMAG00000001147	-	90	71.429	Petromyzon_marinus
ENSELUG00000000497	lsm7	60	73.052	ENSPCIG00000029457	DAPK2	91	73.529	Phascolarctos_cinereus
ENSELUG00000000497	lsm7	89	91.051	ENSPFOG00000004990	-	98	91.051	Poecilia_formosa
ENSELUG00000000497	lsm7	60	74.675	ENSPFOG00000005336	dapk2b	85	74.675	Poecilia_formosa
ENSELUG00000000497	lsm7	60	75.000	ENSPLAG00000007283	dapk2b	85	75.000	Poecilia_latipinna
ENSELUG00000000497	lsm7	89	91.051	ENSPLAG00000015727	-	98	91.051	Poecilia_latipinna
ENSELUG00000000497	lsm7	89	91.051	ENSPMEG00000014103	-	98	91.051	Poecilia_mexicana
ENSELUG00000000497	lsm7	63	71.341	ENSPMEG00000014459	dapk2b	80	71.341	Poecilia_mexicana
ENSELUG00000000497	lsm7	60	75.000	ENSPREG00000009361	dapk2b	79	75.000	Poecilia_reticulata
ENSELUG00000000497	lsm7	89	90.828	ENSPREG00000013588	-	98	90.828	Poecilia_reticulata
ENSELUG00000000497	lsm7	60	73.377	ENSPPYG00000006543	DAPK2	86	73.377	Pongo_abelii
ENSELUG00000000497	lsm7	90	62.528	ENSPCOG00000015063	DAPK2	92	62.528	Propithecus_coquereli
ENSELUG00000000497	lsm7	52	81.226	ENSPVAG00000016867	DAPK2	71	81.226	Pteropus_vampyrus
ENSELUG00000000497	lsm7	59	72.876	ENSPNAG00000013223	dapk2b	90	72.185	Pygocentrus_nattereri
ENSELUG00000000497	lsm7	89	85.426	ENSPNAG00000010482	-	98	85.426	Pygocentrus_nattereri
ENSELUG00000000497	lsm7	59	74.587	ENSRNOG00000017332	Dapk2	83	74.587	Rattus_norvegicus
ENSELUG00000000497	lsm7	89	63.964	ENSRBIG00000029819	DAPK2	82	74.587	Rhinopithecus_bieti
ENSELUG00000000497	lsm7	89	63.739	ENSRROG00000029585	DAPK2	82	74.587	Rhinopithecus_roxellana
ENSELUG00000000497	lsm7	55	85.145	ENSSBOG00000027113	DAPK1	92	82.635	Saimiri_boliviensis_boliviensis
ENSELUG00000000497	lsm7	89	63.964	ENSSBOG00000018728	DAPK2	83	74.026	Saimiri_boliviensis_boliviensis
ENSELUG00000000497	lsm7	60	72.727	ENSSHAG00000018240	DAPK2	84	72.727	Sarcophilus_harrisii
ENSELUG00000000497	lsm7	55	79.710	ENSSMAG00000015584	dapk2b	84	74.183	Scophthalmus_maximus
ENSELUG00000000497	lsm7	78	66.837	ENSSDUG00000008929	dapk2b	88	73.941	Seriola_dumerili
ENSELUG00000000497	lsm7	85	62.441	ENSSLDG00000024401	dapk2b	72	81.102	Seriola_lalandi_dorsalis
ENSELUG00000000497	lsm7	62	74.132	ENSSPUG00000014936	DAPK2	73	74.132	Sphenodon_punctatus
ENSELUG00000000497	lsm7	60	74.351	ENSSPAG00000017851	dapk2b	85	74.351	Stegastes_partitus
ENSELUG00000000497	lsm7	60	73.463	ENSTGUG00000003221	DAPK2	86	73.463	Taeniopygia_guttata
ENSELUG00000000497	lsm7	60	73.377	ENSTRUG00000012994	dapk2b	85	73.377	Takifugu_rubripes
ENSELUG00000000497	lsm7	60	74.026	ENSTNIG00000008407	dapk2b	84	74.026	Tetraodon_nigroviridis
ENSELUG00000000497	lsm7	60	74.026	ENSTTRG00000011301	DAPK2	83	74.026	Tursiops_truncatus
ENSELUG00000000497	lsm7	60	74.026	ENSUMAG00000012690	DAPK2	80	74.026	Ursus_maritimus
ENSELUG00000000497	lsm7	76	83.679	ENSUMAG00000007459	-	82	83.679	Ursus_maritimus
ENSELUG00000000497	lsm7	60	74.110	ENSVVUG00000013611	DAPK2	85	74.394	Vulpes_vulpes
ENSELUG00000000497	lsm7	89	62.697	ENSXETG00000009747	dapk2	98	62.697	Xenopus_tropicalis
ENSELUG00000000497	lsm7	86	90.210	ENSXCOG00000018726	-	98	90.210	Xiphophorus_couchianus
ENSELUG00000000497	lsm7	56	74.913	ENSXCOG00000020035	dapk2b	83	74.913	Xiphophorus_couchianus
ENSELUG00000000497	lsm7	60	74.675	ENSXMAG00000003350	dapk2b	85	74.675	Xiphophorus_maculatus