EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000000502 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 4354 bases
Position: chrLG11:34607519-34611872
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000013349	TruB_N	PF01509.18	5.5e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000038476	-	861	-	ENSELUP00000013349	286 (aa)	-	-

Gene Model

Click here to download ENSELUG00000000502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000000502	trub1	72	31.429	ENSELUG00000002376	trub2	65	31.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000502	trub1	86	69.388	ENSG00000165832	TRUB1	70	69.388	Homo_sapiens
ENSELUG00000000502	trub1	85	83.197	ENSAPOG00000020565	trub1	96	80.000	Acanthochromis_polyacanthus
ENSELUG00000000502	trub1	86	69.231	ENSAMEG00000014931	TRUB1	70	69.231	Ailuropoda_melanoleuca
ENSELUG00000000502	trub1	97	70.251	ENSACIG00000003060	trub1	93	70.251	Amphilophus_citrinellus
ENSELUG00000000502	trub1	85	82.787	ENSAOCG00000017188	trub1	98	78.810	Amphiprion_ocellaris
ENSELUG00000000502	trub1	91	80.077	ENSAPEG00000015209	trub1	98	78.439	Amphiprion_percula
ENSELUG00000000502	trub1	85	81.148	ENSATEG00000023291	trub1	87	81.148	Anabas_testudineus
ENSELUG00000000502	trub1	85	69.262	ENSAPLG00000006808	TRUB1	87	69.262	Anas_platyrhynchos
ENSELUG00000000502	trub1	86	65.306	ENSACAG00000009282	TRUB1	88	65.306	Anolis_carolinensis
ENSELUG00000000502	trub1	86	69.796	ENSANAG00000022870	TRUB1	70	69.796	Aotus_nancymaae
ENSELUG00000000502	trub1	89	79.528	ENSACLG00000000823	trub1	91	79.528	Astatotilapia_calliptera
ENSELUG00000000502	trub1	91	82.239	ENSAMXG00000015845	trub1	87	82.239	Astyanax_mexicanus
ENSELUG00000000502	trub1	86	70.204	ENSBTAG00000012955	TRUB1	70	70.204	Bos_taurus
ENSELUG00000000502	trub1	86	69.796	ENSCJAG00000047815	TRUB1	70	69.796	Callithrix_jacchus
ENSELUG00000000502	trub1	86	70.204	ENSCAFG00000011688	TRUB1	70	70.204	Canis_familiaris
ENSELUG00000000502	trub1	86	70.204	ENSCAFG00020013237	TRUB1	70	70.204	Canis_lupus_dingo
ENSELUG00000000502	trub1	86	70.612	ENSCHIG00000020884	TRUB1	73	70.612	Capra_hircus
ENSELUG00000000502	trub1	86	69.388	ENSTSYG00000000446	TRUB1	70	69.388	Carlito_syrichta
ENSELUG00000000502	trub1	74	61.611	ENSCAPG00000017088	TRUB1	82	61.611	Cavia_aperea
ENSELUG00000000502	trub1	65	68.280	ENSCPOG00000030129	-	72	68.280	Cavia_porcellus
ENSELUG00000000502	trub1	64	68.852	ENSCPOG00000040236	-	75	68.852	Cavia_porcellus
ENSELUG00000000502	trub1	86	69.796	ENSCCAG00000028842	TRUB1	70	69.796	Cebus_capucinus
ENSELUG00000000502	trub1	86	69.796	ENSCATG00000033431	TRUB1	70	69.796	Cercocebus_atys
ENSELUG00000000502	trub1	64	67.760	ENSCLAG00000008664	TRUB1	75	67.760	Chinchilla_lanigera
ENSELUG00000000502	trub1	86	69.796	ENSCSAG00000004891	TRUB1	70	69.796	Chlorocebus_sabaeus
ENSELUG00000000502	trub1	85	62.140	ENSCHOG00000011931	TRUB1	70	62.140	Choloepus_hoffmanni
ENSELUG00000000502	trub1	86	71.429	ENSCPBG00000003051	TRUB1	84	71.429	Chrysemys_picta_bellii
ENSELUG00000000502	trub1	86	69.796	ENSCANG00000029445	TRUB1	70	69.796	Colobus_angolensis_palliatus
ENSELUG00000000502	trub1	83	60.924	ENSCGRG00001010322	-	66	60.000	Cricetulus_griseus_chok1gshd
ENSELUG00000000502	trub1	74	69.340	ENSCGRG00001016772	-	71	69.159	Cricetulus_griseus_chok1gshd
ENSELUG00000000502	trub1	83	68.908	ENSCGRG00000010806	Trub1	75	68.163	Cricetulus_griseus_crigri
ENSELUG00000000502	trub1	88	74.704	ENSCSEG00000011261	trub1	82	74.704	Cynoglossus_semilaevis
ENSELUG00000000502	trub1	92	74.436	ENSCVAG00000008791	trub1	82	74.436	Cyprinodon_variegatus
ENSELUG00000000502	trub1	92	76.426	ENSDARG00000053805	trub1	90	76.426	Danio_rerio
ENSELUG00000000502	trub1	86	67.755	ENSDNOG00000001069	TRUB1	70	67.755	Dasypus_novemcinctus
ENSELUG00000000502	trub1	83	69.328	ENSDORG00000010431	Trub1	71	68.571	Dipodomys_ordii
ENSELUG00000000502	trub1	63	67.883	ENSETEG00000009183	TRUB1	50	67.883	Echinops_telfairi
ENSELUG00000000502	trub1	86	68.980	ENSEASG00005014739	TRUB1	70	68.980	Equus_asinus_asinus
ENSELUG00000000502	trub1	86	68.980	ENSECAG00000007177	TRUB1	70	68.980	Equus_caballus
ENSELUG00000000502	trub1	86	61.224	ENSEEUG00000013993	TRUB1	68	61.224	Erinaceus_europaeus
ENSELUG00000000502	trub1	86	70.204	ENSFCAG00000031927	TRUB1	70	70.204	Felis_catus
ENSELUG00000000502	trub1	75	68.837	ENSFALG00000002232	TRUB1	83	68.837	Ficedula_albicollis
ENSELUG00000000502	trub1	64	69.399	ENSFDAG00000008140	TRUB1	75	69.399	Fukomys_damarensis
ENSELUG00000000502	trub1	91	75.479	ENSFHEG00000004016	trub1	90	75.479	Fundulus_heteroclitus
ENSELUG00000000502	trub1	91	64.773	ENSGALG00000009091	TRUB1	93	64.773	Gallus_gallus
ENSELUG00000000502	trub1	84	79.752	ENSGAFG00000009193	trub1	85	79.752	Gambusia_affinis
ENSELUG00000000502	trub1	68	80.928	ENSGACG00000015387	trub1	95	80.928	Gasterosteus_aculeatus
ENSELUG00000000502	trub1	86	72.245	ENSGAGG00000009758	TRUB1	70	72.245	Gopherus_agassizii
ENSELUG00000000502	trub1	86	69.796	ENSGGOG00000004583	TRUB1	70	69.796	Gorilla_gorilla
ENSELUG00000000502	trub1	89	78.824	ENSHBUG00000016787	trub1	92	78.824	Haplochromis_burtoni
ENSELUG00000000502	trub1	86	66.939	ENSHGLG00000015314	TRUB1	70	66.939	Heterocephalus_glaber_female
ENSELUG00000000502	trub1	64	68.852	ENSHGLG00100009183	TRUB1	77	68.852	Heterocephalus_glaber_male
ENSELUG00000000502	trub1	95	76.190	ENSHCOG00000017877	trub1	99	76.190	Hippocampus_comes
ENSELUG00000000502	trub1	86	83.806	ENSIPUG00000017559	trub1	87	83.806	Ictalurus_punctatus
ENSELUG00000000502	trub1	86	69.388	ENSSTOG00000003641	TRUB1	73	69.388	Ictidomys_tridecemlineatus
ENSELUG00000000502	trub1	86	69.796	ENSJJAG00000011800	Trub1	72	69.796	Jaculus_jaculus
ENSELUG00000000502	trub1	89	77.647	ENSKMAG00000006232	trub1	91	77.647	Kryptolebias_marmoratus
ENSELUG00000000502	trub1	95	78.309	ENSLBEG00000026722	trub1	94	78.309	Labrus_bergylta
ENSELUG00000000502	trub1	93	67.528	ENSLACG00000014885	TRUB1	91	67.528	Latimeria_chalumnae
ENSELUG00000000502	trub1	97	70.758	ENSLOCG00000012979	trub1	94	70.758	Lepisosteus_oculatus
ENSELUG00000000502	trub1	86	69.388	ENSLAFG00000015452	TRUB1	73	67.704	Loxodonta_africana
ENSELUG00000000502	trub1	86	69.796	ENSMFAG00000031767	TRUB1	70	69.796	Macaca_fascicularis
ENSELUG00000000502	trub1	86	69.796	ENSMMUG00000001902	TRUB1	70	69.796	Macaca_mulatta
ENSELUG00000000502	trub1	86	64.082	ENSMNEG00000044646	TRUB1	69	64.082	Macaca_nemestrina
ENSELUG00000000502	trub1	86	69.796	ENSMLEG00000042655	TRUB1	70	69.796	Mandrillus_leucophaeus
ENSELUG00000000502	trub1	89	79.528	ENSMZEG00005024095	trub1	91	79.528	Maylandia_zebra
ENSELUG00000000502	trub1	95	63.636	ENSMGAG00000011135	TRUB1	94	63.636	Meleagris_gallopavo
ENSELUG00000000502	trub1	83	67.227	ENSMAUG00000011101	Trub1	72	66.531	Mesocricetus_auratus
ENSELUG00000000502	trub1	86	69.388	ENSMICG00000016324	TRUB1	70	69.388	Microcebus_murinus
ENSELUG00000000502	trub1	84	69.874	ENSMOCG00000017759	Trub1	74	69.106	Microtus_ochrogaster
ENSELUG00000000502	trub1	85	71.311	ENSMODG00000009676	TRUB1	68	71.020	Monodelphis_domestica
ENSELUG00000000502	trub1	84	69.710	MGP_CAROLIEiJ_G0023100	Trub1	82	66.337	Mus_caroli
ENSELUG00000000502	trub1	84	68.880	ENSMUSG00000025086	Trub1	82	65.347	Mus_musculus
ENSELUG00000000502	trub1	86	68.163	MGP_PahariEiJ_G0014588	Trub1	72	68.163	Mus_pahari
ENSELUG00000000502	trub1	84	68.880	MGP_SPRETEiJ_G0024021	Trub1	82	65.347	Mus_spretus
ENSELUG00000000502	trub1	86	70.204	ENSMPUG00000003556	TRUB1	70	70.204	Mustela_putorius_furo
ENSELUG00000000502	trub1	86	69.388	ENSMLUG00000017686	TRUB1	72	69.388	Myotis_lucifugus
ENSELUG00000000502	trub1	86	68.571	ENSNGAG00000018682	Trub1	70	68.571	Nannospalax_galili
ENSELUG00000000502	trub1	90	79.767	ENSNBRG00000023393	trub1	92	79.767	Neolamprologus_brichardi
ENSELUG00000000502	trub1	86	69.796	ENSNLEG00000016345	TRUB1	70	69.796	Nomascus_leucogenys
ENSELUG00000000502	trub1	70	74.129	ENSMEUG00000006603	TRUB1	75	73.762	Notamacropus_eugenii
ENSELUG00000000502	trub1	86	68.571	ENSOPRG00000009371	TRUB1	71	68.571	Ochotona_princeps
ENSELUG00000000502	trub1	86	67.347	ENSODEG00000010854	TRUB1	70	67.347	Octodon_degus
ENSELUG00000000502	trub1	93	77.154	ENSONIG00000007249	trub1	97	77.154	Oreochromis_niloticus
ENSELUG00000000502	trub1	87	68.952	ENSOANG00000001556	TRUB1	82	68.952	Ornithorhynchus_anatinus
ENSELUG00000000502	trub1	86	67.347	ENSOCUG00000009456	TRUB1	71	67.347	Oryctolagus_cuniculus
ENSELUG00000000502	trub1	87	77.600	ENSORLG00000029719	trub1	90	77.689	Oryzias_latipes
ENSELUG00000000502	trub1	87	77.600	ENSORLG00020016767	trub1	89	77.689	Oryzias_latipes_hni
ENSELUG00000000502	trub1	87	77.600	ENSORLG00015014728	trub1	90	77.689	Oryzias_latipes_hsok
ENSELUG00000000502	trub1	91	76.154	ENSOMEG00000014556	trub1	91	76.154	Oryzias_melastigma
ENSELUG00000000502	trub1	86	69.796	ENSOGAG00000015895	TRUB1	70	69.796	Otolemur_garnettii
ENSELUG00000000502	trub1	86	69.048	ENSOARG00000015591	TRUB1	72	69.048	Ovis_aries
ENSELUG00000000502	trub1	86	69.796	ENSPPAG00000043645	TRUB1	70	69.796	Pan_paniscus
ENSELUG00000000502	trub1	86	69.388	ENSPPRG00000007096	TRUB1	70	69.388	Panthera_pardus
ENSELUG00000000502	trub1	86	69.796	ENSPTIG00000006378	TRUB1	70	69.796	Panthera_tigris_altaica
ENSELUG00000000502	trub1	86	69.796	ENSPTRG00000002964	TRUB1	70	69.796	Pan_troglodytes
ENSELUG00000000502	trub1	86	69.796	ENSPANG00000020712	TRUB1	70	69.796	Papio_anubis
ENSELUG00000000502	trub1	60	76.744	ENSPKIG00000003852	trub1	74	76.744	Paramormyrops_kingsleyae
ENSELUG00000000502	trub1	87	69.600	ENSPSIG00000012877	TRUB1	86	69.600	Pelodiscus_sinensis
ENSELUG00000000502	trub1	88	77.075	ENSPMGG00000000075	trub1	92	75.875	Periophthalmus_magnuspinnatus
ENSELUG00000000502	trub1	86	69.388	ENSPEMG00000011156	Trub1	72	69.388	Peromyscus_maniculatus_bairdii
ENSELUG00000000502	trub1	85	71.311	ENSPCIG00000009729	TRUB1	67	71.020	Phascolarctos_cinereus
ENSELUG00000000502	trub1	88	80.080	ENSPFOG00000009950	trub1	92	80.080	Poecilia_formosa
ENSELUG00000000502	trub1	91	77.778	ENSPLAG00000013855	trub1	92	77.778	Poecilia_latipinna
ENSELUG00000000502	trub1	91	77.778	ENSPMEG00000009064	trub1	94	77.778	Poecilia_mexicana
ENSELUG00000000502	trub1	91	77.395	ENSPREG00000003343	trub1	94	77.395	Poecilia_reticulata
ENSELUG00000000502	trub1	86	69.388	ENSPPYG00000002676	TRUB1	70	69.388	Pongo_abelii
ENSELUG00000000502	trub1	90	61.089	ENSPCAG00000008427	TRUB1	73	61.089	Procavia_capensis
ENSELUG00000000502	trub1	86	63.673	ENSPCOG00000024360	TRUB1	68	63.673	Propithecus_coquereli
ENSELUG00000000502	trub1	71	72.772	ENSPVAG00000007575	TRUB1	77	72.772	Pteropus_vampyrus
ENSELUG00000000502	trub1	89	79.216	ENSPNYG00000018614	trub1	92	79.216	Pundamilia_nyererei
ENSELUG00000000502	trub1	91	70.656	ENSPNAG00000006881	trub1	84	70.656	Pygocentrus_nattereri
ENSELUG00000000502	trub1	91	64.151	ENSRNOG00000017321	Trub1	78	64.151	Rattus_norvegicus
ENSELUG00000000502	trub1	86	60.324	ENSRBIG00000033423	TRUB1	68	60.324	Rhinopithecus_bieti
ENSELUG00000000502	trub1	86	69.796	ENSRROG00000033902	TRUB1	70	69.796	Rhinopithecus_roxellana
ENSELUG00000000502	trub1	86	69.796	ENSSBOG00000024237	TRUB1	70	69.796	Saimiri_boliviensis_boliviensis
ENSELUG00000000502	trub1	74	71.628	ENSSHAG00000009346	TRUB1	72	71.628	Sarcophilus_harrisii
ENSELUG00000000502	trub1	93	74.812	ENSSFOG00015022124	trub1	90	74.812	Scleropages_formosus
ENSELUG00000000502	trub1	96	78.545	ENSSMAG00000001020	trub1	96	78.545	Scophthalmus_maximus
ENSELUG00000000502	trub1	85	81.481	ENSSDUG00000016414	trub1	94	79.008	Seriola_dumerili
ENSELUG00000000502	trub1	85	81.481	ENSSLDG00000015486	trub1	94	79.008	Seriola_lalandi_dorsalis
ENSELUG00000000502	trub1	86	71.255	ENSSPUG00000001642	TRUB1	85	71.255	Sphenodon_punctatus
ENSELUG00000000502	trub1	93	79.699	ENSSPAG00000001217	trub1	96	79.699	Stegastes_partitus
ENSELUG00000000502	trub1	86	69.388	ENSSSCG00000010653	TRUB1	71	69.388	Sus_scrofa
ENSELUG00000000502	trub1	85	70.492	ENSTGUG00000010971	TRUB1	87	70.492	Taeniopygia_guttata
ENSELUG00000000502	trub1	74	59.716	ENSTBEG00000002880	TRUB1	83	59.716	Tupaia_belangeri
ENSELUG00000000502	trub1	71	72.277	ENSTTRG00000005767	TRUB1	77	72.277	Tursiops_truncatus
ENSELUG00000000502	trub1	86	70.204	ENSUAMG00000024876	TRUB1	70	70.204	Ursus_americanus
ENSELUG00000000502	trub1	86	70.204	ENSUMAG00000002411	TRUB1	72	71.585	Ursus_maritimus
ENSELUG00000000502	trub1	86	70.204	ENSVPAG00000005507	TRUB1	70	70.204	Vicugna_pacos
ENSELUG00000000502	trub1	86	70.204	ENSVVUG00000010085	TRUB1	59	70.204	Vulpes_vulpes
ENSELUG00000000502	trub1	86	71.837	ENSXETG00000023828	trub1	88	71.837	Xenopus_tropicalis
ENSELUG00000000502	trub1	94	73.978	ENSXCOG00000017847	trub1	95	73.978	Xiphophorus_couchianus
ENSELUG00000000502	trub1	91	77.395	ENSXMAG00000014701	trub1	94	77.395	Xiphophorus_maculatus