EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000000552 (Gene tree)
Gene ID: 105017831
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 24717 bases
Position: chrLG18:19029194-19053910
Accession: 105017831
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000015285	XRN_N	PF03159.18	8e-101	1	1
ENSELUP00000015301	XRN_N	PF03159.18	8.1e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000024336	-	3961	XM_010882748	ENSELUP00000015285	967 (aa)	XP_010881050	UPI000578013B
ENSELUT00000039286	-	4006	XM_010882747	ENSELUP00000015301	982 (aa)	XP_010881049	UPI000577D894

Gene Model

Click here to download ENSELUG00000000552's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03008	Ribosome biogenesis in eukaryotes	KEGG
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000552's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000552	xrn2	100	70.799	ENSG00000088930	XRN2	100	70.389	Homo_sapiens
ENSELUG00000000552	xrn2	95	83.031	ENSAPOG00000009818	xrn2	100	81.846	Acanthochromis_polyacanthus
ENSELUG00000000552	xrn2	100	70.902	ENSAMEG00000012581	XRN2	100	70.492	Ailuropoda_melanoleuca
ENSELUG00000000552	xrn2	88	78.846	ENSACIG00000015047	xrn2	95	84.030	Amphilophus_citrinellus
ENSELUG00000000552	xrn2	95	83.031	ENSAOCG00000023632	xrn2	100	81.440	Amphiprion_ocellaris
ENSELUG00000000552	xrn2	95	83.351	ENSAPEG00000014871	xrn2	100	81.744	Amphiprion_percula
ENSELUG00000000552	xrn2	94	84.142	ENSATEG00000001273	xrn2	97	83.689	Anabas_testudineus
ENSELUG00000000552	xrn2	96	71.245	ENSAPLG00000013869	XRN2	100	68.116	Anas_platyrhynchos
ENSELUG00000000552	xrn2	100	70.948	ENSACAG00000005565	XRN2	100	69.939	Anolis_carolinensis
ENSELUG00000000552	xrn2	100	70.389	ENSANAG00000020126	XRN2	100	69.980	Aotus_nancymaae
ENSELUG00000000552	xrn2	90	81.725	ENSACLG00000010522	xrn2	98	81.725	Astatotilapia_calliptera
ENSELUG00000000552	xrn2	100	81.508	ENSAMXG00000018301	xrn2	100	80.603	Astyanax_mexicanus
ENSELUG00000000552	xrn2	100	70.492	ENSBTAG00000011304	XRN2	100	70.082	Bos_taurus
ENSELUG00000000552	xrn2	85	54.196	WBGene00006964	xrn-2	96	51.187	Caenorhabditis_elegans
ENSELUG00000000552	xrn2	100	70.697	ENSCJAG00000005611	XRN2	100	70.287	Callithrix_jacchus
ENSELUG00000000552	xrn2	100	70.902	ENSCAFG00000005185	XRN2	100	70.492	Canis_familiaris
ENSELUG00000000552	xrn2	100	70.902	ENSCAFG00020027479	XRN2	100	70.492	Canis_lupus_dingo
ENSELUG00000000552	xrn2	100	70.389	ENSCHIG00000006921	XRN2	100	69.980	Capra_hircus
ENSELUG00000000552	xrn2	100	70.256	ENSTSYG00000008315	XRN2	100	69.846	Carlito_syrichta
ENSELUG00000000552	xrn2	97	60.587	ENSCAPG00000010773	XRN2	99	59.539	Cavia_aperea
ENSELUG00000000552	xrn2	100	71.004	ENSCPOG00000009407	XRN2	100	70.594	Cavia_porcellus
ENSELUG00000000552	xrn2	100	70.697	ENSCATG00000040350	XRN2	100	70.287	Cercocebus_atys
ENSELUG00000000552	xrn2	100	71.209	ENSCLAG00000013419	XRN2	100	70.799	Chinchilla_lanigera
ENSELUG00000000552	xrn2	100	70.697	ENSCSAG00000011094	XRN2	100	70.287	Chlorocebus_sabaeus
ENSELUG00000000552	xrn2	67	89.247	ENSCHOG00000013404	XRN2	63	89.247	Choloepus_hoffmanni
ENSELUG00000000552	xrn2	100	71.589	ENSCPBG00000023533	XRN2	100	70.211	Chrysemys_picta_bellii
ENSELUG00000000552	xrn2	84	61.183	ENSCING00000022336	-	100	61.893	Ciona_intestinalis
ENSELUG00000000552	xrn2	90	59.247	ENSCSAVG00000011217	-	94	72.530	Ciona_savignyi
ENSELUG00000000552	xrn2	100	70.697	ENSCANG00000040240	XRN2	100	70.287	Colobus_angolensis_palliatus
ENSELUG00000000552	xrn2	98	71.249	ENSCGRG00001010676	Xrn2	98	72.264	Cricetulus_griseus_chok1gshd
ENSELUG00000000552	xrn2	97	69.895	ENSCGRG00000006378	Xrn2	99	69.474	Cricetulus_griseus_crigri
ENSELUG00000000552	xrn2	52	81.151	ENSCSEG00000005628	xrn2	100	81.151	Cynoglossus_semilaevis
ENSELUG00000000552	xrn2	88	82.306	ENSCVAG00000018999	xrn2	98	88.528	Cyprinodon_variegatus
ENSELUG00000000552	xrn2	100	78.557	ENSDARG00000101900	xrn2	96	87.380	Danio_rerio
ENSELUG00000000552	xrn2	100	71.238	ENSDNOG00000001895	XRN2	100	70.829	Dasypus_novemcinctus
ENSELUG00000000552	xrn2	100	69.672	ENSDORG00000005434	Xrn2	100	68.846	Dipodomys_ordii
ENSELUG00000000552	xrn2	85	55.907	FBgn0031868	Rat1	90	56.109	Drosophila_melanogaster
ENSELUG00000000552	xrn2	94	81.509	ENSETEG00000001740	XRN2	93	81.509	Echinops_telfairi
ENSELUG00000000552	xrn2	83	70.146	ENSEBUG00000016136	xrn2	100	70.146	Eptatretus_burgeri
ENSELUG00000000552	xrn2	100	71.341	ENSEASG00005002484	XRN2	100	70.931	Equus_asinus_asinus
ENSELUG00000000552	xrn2	94	84.615	ENSECAG00000018988	XRN2	96	84.615	Equus_caballus
ENSELUG00000000552	xrn2	65	88.000	ENSEEUG00000009265	XRN2	67	88.000	Erinaceus_europaeus
ENSELUG00000000552	xrn2	100	70.902	ENSFCAG00000007970	XRN2	100	70.492	Felis_catus
ENSELUG00000000552	xrn2	94	73.064	ENSFALG00000004508	XRN2	100	70.195	Ficedula_albicollis
ENSELUG00000000552	xrn2	100	71.004	ENSFDAG00000016311	XRN2	100	70.594	Fukomys_damarensis
ENSELUG00000000552	xrn2	53	80.651	ENSFHEG00000013039	xrn2	98	80.651	Fundulus_heteroclitus
ENSELUG00000000552	xrn2	84	85.557	ENSGMOG00000013436	xrn2	100	85.557	Gadus_morhua
ENSELUG00000000552	xrn2	100	70.902	ENSGALG00000008372	XRN2	100	68.283	Gallus_gallus
ENSELUG00000000552	xrn2	88	83.812	ENSGAFG00000014284	xrn2	99	83.812	Gambusia_affinis
ENSELUG00000000552	xrn2	85	84.179	ENSGACG00000011870	xrn2	96	89.251	Gasterosteus_aculeatus
ENSELUG00000000552	xrn2	100	71.385	ENSGAGG00000004884	XRN2	100	70.010	Gopherus_agassizii
ENSELUG00000000552	xrn2	100	70.697	ENSGGOG00000013738	XRN2	100	70.287	Gorilla_gorilla
ENSELUG00000000552	xrn2	53	84.291	ENSHBUG00000005077	xrn2	94	84.291	Haplochromis_burtoni
ENSELUG00000000552	xrn2	100	69.877	ENSHGLG00000014831	XRN2	100	69.467	Heterocephalus_glaber_female
ENSELUG00000000552	xrn2	100	69.877	ENSHGLG00100013130	XRN2	100	69.467	Heterocephalus_glaber_male
ENSELUG00000000552	xrn2	99	78.894	ENSHCOG00000011994	xrn2	99	78.916	Hippocampus_comes
ENSELUG00000000552	xrn2	100	78.979	ENSIPUG00000006639	xrn2	100	78.278	Ictalurus_punctatus
ENSELUG00000000552	xrn2	100	71.107	ENSSTOG00000000589	XRN2	100	70.697	Ictidomys_tridecemlineatus
ENSELUG00000000552	xrn2	100	70.799	ENSJJAG00000022128	Xrn2	100	70.317	Jaculus_jaculus
ENSELUG00000000552	xrn2	52	91.089	ENSLBEG00000010041	xrn2	100	91.089	Labrus_bergylta
ENSELUG00000000552	xrn2	93	72.816	ENSLACG00000008307	XRN2	98	77.435	Latimeria_chalumnae
ENSELUG00000000552	xrn2	99	74.873	ENSLOCG00000016874	xrn2	93	82.228	Lepisosteus_oculatus
ENSELUG00000000552	xrn2	100	71.209	ENSLAFG00000014624	XRN2	100	70.799	Loxodonta_africana
ENSELUG00000000552	xrn2	100	70.697	ENSMFAG00000038122	XRN2	100	70.287	Macaca_fascicularis
ENSELUG00000000552	xrn2	100	70.697	ENSMMUG00000011405	XRN2	100	70.287	Macaca_mulatta
ENSELUG00000000552	xrn2	100	70.594	ENSMNEG00000040626	XRN2	100	70.184	Macaca_nemestrina
ENSELUG00000000552	xrn2	100	70.594	ENSMLEG00000041897	XRN2	100	70.184	Mandrillus_leucophaeus
ENSELUG00000000552	xrn2	94	84.101	ENSMAMG00000008633	xrn2	96	83.423	Mastacembelus_armatus
ENSELUG00000000552	xrn2	90	83.541	ENSMZEG00005022362	xrn2	98	83.541	Maylandia_zebra
ENSELUG00000000552	xrn2	99	70.102	ENSMGAG00000003196	XRN2	90	74.684	Meleagris_gallopavo
ENSELUG00000000552	xrn2	100	71.458	ENSMAUG00000021842	Xrn2	100	71.047	Mesocricetus_auratus
ENSELUG00000000552	xrn2	100	70.522	ENSMICG00000008126	XRN2	100	70.287	Microcebus_murinus
ENSELUG00000000552	xrn2	100	70.697	ENSMOCG00000012588	Xrn2	100	70.287	Microtus_ochrogaster
ENSELUG00000000552	xrn2	88	83.599	ENSMMOG00000017576	xrn2	96	84.160	Mola_mola
ENSELUG00000000552	xrn2	100	72.029	ENSMODG00000006163	XRN2	100	71.370	Monodelphis_domestica
ENSELUG00000000552	xrn2	99	80.455	ENSMALG00000011355	xrn2	95	89.060	Monopterus_albus
ENSELUG00000000552	xrn2	100	70.389	MGP_CAROLIEiJ_G0024400	Xrn2	100	69.632	Mus_caroli
ENSELUG00000000552	xrn2	100	70.389	ENSMUSG00000027433	Xrn2	100	69.632	Mus_musculus
ENSELUG00000000552	xrn2	100	70.389	MGP_PahariEiJ_G0025843	Xrn2	100	69.632	Mus_pahari
ENSELUG00000000552	xrn2	100	70.389	MGP_SPRETEiJ_G0025318	Xrn2	94	75.652	Mus_spretus
ENSELUG00000000552	xrn2	100	69.587	ENSMPUG00000001198	XRN2	93	69.184	Mustela_putorius_furo
ENSELUG00000000552	xrn2	100	70.769	ENSMLUG00000001536	XRN2	100	70.359	Myotis_lucifugus
ENSELUG00000000552	xrn2	100	71.443	ENSNGAG00000018138	Xrn2	100	70.060	Nannospalax_galili
ENSELUG00000000552	xrn2	90	83.655	ENSNBRG00000008062	xrn2	98	83.655	Neolamprologus_brichardi
ENSELUG00000000552	xrn2	100	70.697	ENSNLEG00000009991	XRN2	100	70.287	Nomascus_leucogenys
ENSELUG00000000552	xrn2	51	84.444	ENSMEUG00000008622	-	53	84.444	Notamacropus_eugenii
ENSELUG00000000552	xrn2	76	73.158	ENSOPRG00000001397	-	63	73.158	Ochotona_princeps
ENSELUG00000000552	xrn2	100	71.004	ENSODEG00000010745	-	100	70.594	Octodon_degus
ENSELUG00000000552	xrn2	98	64.286	ENSODEG00000000860	-	96	66.009	Octodon_degus
ENSELUG00000000552	xrn2	100	79.819	ENSONIG00000018720	xrn2	100	78.819	Oreochromis_niloticus
ENSELUG00000000552	xrn2	100	71.648	ENSOANG00000015673	XRN2	100	69.021	Ornithorhynchus_anatinus
ENSELUG00000000552	xrn2	100	70.902	ENSOCUG00000013468	XRN2	100	70.492	Oryctolagus_cuniculus
ENSELUG00000000552	xrn2	98	80.228	ENSORLG00000017213	xrn2	97	83.927	Oryzias_latipes
ENSELUG00000000552	xrn2	98	80.021	ENSORLG00020001824	xrn2	100	79.573	Oryzias_latipes_hni
ENSELUG00000000552	xrn2	98	79.814	ENSORLG00015019747	xrn2	100	79.370	Oryzias_latipes_hsok
ENSELUG00000000552	xrn2	95	80.876	ENSOMEG00000019820	xrn2	100	78.521	Oryzias_melastigma
ENSELUG00000000552	xrn2	100	71.034	ENSOGAG00000001068	XRN2	100	70.624	Otolemur_garnettii
ENSELUG00000000552	xrn2	97	69.895	ENSOARG00000004443	XRN2	99	69.474	Ovis_aries
ENSELUG00000000552	xrn2	100	70.697	ENSPPAG00000033549	XRN2	100	70.287	Pan_paniscus
ENSELUG00000000552	xrn2	100	70.902	ENSPPRG00000008732	XRN2	100	70.492	Panthera_pardus
ENSELUG00000000552	xrn2	97	70.526	ENSPTIG00000015683	XRN2	97	70.105	Panthera_tigris_altaica
ENSELUG00000000552	xrn2	100	70.697	ENSPTRG00000013308	XRN2	100	70.287	Pan_troglodytes
ENSELUG00000000552	xrn2	100	70.697	ENSPANG00000018088	XRN2	100	70.287	Papio_anubis
ENSELUG00000000552	xrn2	100	79.049	ENSPKIG00000016889	xrn2	100	78.169	Paramormyrops_kingsleyae
ENSELUG00000000552	xrn2	79	77.591	ENSPSIG00000014666	XRN2	100	77.591	Pelodiscus_sinensis
ENSELUG00000000552	xrn2	100	70.184	ENSPEMG00000000111	Xrn2	100	69.703	Peromyscus_maniculatus_bairdii
ENSELUG00000000552	xrn2	100	78.090	ENSPFOG00000004182	xrn2	99	78.557	Poecilia_formosa
ENSELUG00000000552	xrn2	88	83.812	ENSPLAG00000007351	xrn2	97	83.812	Poecilia_latipinna
ENSELUG00000000552	xrn2	95	77.152	ENSPMEG00000011798	xrn2	99	77.634	Poecilia_mexicana
ENSELUG00000000552	xrn2	90	83.447	ENSPREG00000012452	xrn2	99	82.828	Poecilia_reticulata
ENSELUG00000000552	xrn2	100	70.389	ENSPPYG00000010755	XRN2	100	69.980	Pongo_abelii
ENSELUG00000000552	xrn2	100	67.382	ENSPCAG00000011191	XRN2	100	66.973	Procavia_capensis
ENSELUG00000000552	xrn2	100	65.061	ENSPCOG00000016468	XRN2	100	64.857	Propithecus_coquereli
ENSELUG00000000552	xrn2	93	66.365	ENSPVAG00000004596	XRN2	93	66.365	Pteropus_vampyrus
ENSELUG00000000552	xrn2	90	81.725	ENSPNYG00000001765	xrn2	98	81.725	Pundamilia_nyererei
ENSELUG00000000552	xrn2	100	80.561	ENSPNAG00000010956	xrn2	99	79.459	Pygocentrus_nattereri
ENSELUG00000000552	xrn2	100	71.209	ENSRNOG00000011785	Xrn2	100	70.348	Rattus_norvegicus
ENSELUG00000000552	xrn2	84	76.792	ENSRBIG00000036193	XRN2	100	76.792	Rhinopithecus_bieti
ENSELUG00000000552	xrn2	100	70.697	ENSRROG00000044400	XRN2	90	70.287	Rhinopithecus_roxellana
ENSELUG00000000552	xrn2	65	52.577	YOR048C	RAT1	61	53.641	Saccharomyces_cerevisiae
ENSELUG00000000552	xrn2	100	70.697	ENSSBOG00000021014	XRN2	100	70.287	Saimiri_boliviensis_boliviensis
ENSELUG00000000552	xrn2	99	80.162	ENSSFOG00015001091	xrn2	99	79.656	Scleropages_formosus
ENSELUG00000000552	xrn2	90	84.736	ENSSMAG00000007834	xrn2	100	80.948	Scophthalmus_maximus
ENSELUG00000000552	xrn2	95	81.565	ENSSDUG00000012802	xrn2	99	84.904	Seriola_dumerili
ENSELUG00000000552	xrn2	91	86.860	ENSSLDG00000021273	xrn2	99	86.981	Seriola_lalandi_dorsalis
ENSELUG00000000552	xrn2	71	88.000	ENSSARG00000005859	-	70	88.000	Sorex_araneus
ENSELUG00000000552	xrn2	97	69.948	ENSSPUG00000005485	XRN2	94	71.183	Sphenodon_punctatus
ENSELUG00000000552	xrn2	100	80.527	ENSSPAG00000016027	xrn2	99	81.117	Stegastes_partitus
ENSELUG00000000552	xrn2	100	69.467	ENSSSCG00000007109	XRN2	100	69.057	Sus_scrofa
ENSELUG00000000552	xrn2	98	69.833	ENSTGUG00000007535	XRN2	100	68.077	Taeniopygia_guttata
ENSELUG00000000552	xrn2	100	78.879	ENSTRUG00000015489	xrn2	100	79.079	Takifugu_rubripes
ENSELUG00000000552	xrn2	100	76.434	ENSTNIG00000010712	xrn2	100	75.798	Tetraodon_nigroviridis
ENSELUG00000000552	xrn2	100	70.184	ENSTBEG00000004119	XRN2	100	69.775	Tupaia_belangeri
ENSELUG00000000552	xrn2	93	78.815	ENSTTRG00000009087	XRN2	93	78.815	Tursiops_truncatus
ENSELUG00000000552	xrn2	100	70.902	ENSUAMG00000024634	XRN2	97	85.888	Ursus_americanus
ENSELUG00000000552	xrn2	97	70.421	ENSUMAG00000004012	XRN2	95	70.000	Ursus_maritimus
ENSELUG00000000552	xrn2	83	83.495	ENSVPAG00000010694	XRN2	85	83.495	Vicugna_pacos
ENSELUG00000000552	xrn2	100	70.902	ENSVVUG00000012178	XRN2	100	70.492	Vulpes_vulpes
ENSELUG00000000552	xrn2	99	70.855	ENSXETG00000023501	xrn2	99	70.298	Xenopus_tropicalis
ENSELUG00000000552	xrn2	100	77.688	ENSXMAG00000000242	xrn2	92	85.888	Xiphophorus_maculatus