EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000000815 (Gene tree)
Gene ID: 105022750
Gene Symbol: SNRPC (1 of many)
Alias: U1-C|Yhc1
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7954 bases
Position: chrLG12:13884448-13892401
Accession: 105022750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000019822	zf-U1	PF06220.12	1.6e-22	1	1
ENSELUP00000019834	zf-U1	PF06220.12	3e-20	1	1
ENSELUP00000039082	zf-U1	PF06220.12	6.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000030080	SNRPC (1 of many)-201	2479	-	ENSELUP00000039082	163 (aa)	-	-
ENSELUT00000041190	SNRPC (1 of many)-202	2485	-	ENSELUP00000019834	165 (aa)	-	-
ENSELUT00000041192	SNRPC (1 of many)-203	2794	XM_010891434	ENSELUP00000019822	157 (aa)	XP_010889736	UPI0005761175

Gene Model

Click here to download ENSELUG00000000815's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000000815's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000000815	SNRPC	100	80.503	ENSELUG00000020489	snrpc	100	77.848

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000000815	SNRPC	50	94.872	ENSG00000124562	SNRPC	100	78.616	Homo_sapiens
ENSELUG00000000815	SNRPC	50	91.026	ENSAMEG00000000963	SNRPC	89	77.019	Ailuropoda_melanoleuca
ENSELUG00000000815	SNRPC	99	71.519	ENSANAG00000020588	-	93	71.069	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	79.375	ENSANAG00000019157	-	100	76.875	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	77.987	ENSANAG00000007843	-	100	77.987	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	69.182	ENSANAG00000019726	-	92	72.956	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	66.038	ENSANAG00000021026	-	100	61.635	Aotus_nancymaae
ENSELUG00000000815	SNRPC	50	94.872	ENSANAG00000019696	-	100	78.616	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	61.635	ENSANAG00000021444	-	59	70.968	Aotus_nancymaae
ENSELUG00000000815	SNRPC	100	84.277	ENSAMXG00000032641	snrpc	91	81.212	Astyanax_mexicanus
ENSELUG00000000815	SNRPC	50	94.872	ENSBTAG00000024549	SNRPC	100	78.616	Bos_taurus
ENSELUG00000000815	SNRPC	50	92.308	ENSCJAG00000041822	-	100	76.875	Callithrix_jacchus
ENSELUG00000000815	SNRPC	100	77.987	ENSCJAG00000043055	-	100	77.987	Callithrix_jacchus
ENSELUG00000000815	SNRPC	50	94.872	ENSCJAG00000015321	-	100	78.616	Callithrix_jacchus
ENSELUG00000000815	SNRPC	100	66.875	ENSCAFG00000025525	-	100	48.619	Canis_familiaris
ENSELUG00000000815	SNRPC	50	94.872	ENSCAFG00000001231	-	74	87.234	Canis_familiaris
ENSELUG00000000815	SNRPC	100	75.472	ENSCAFG00000031775	-	100	75.472	Canis_familiaris
ENSELUG00000000815	SNRPC	99	70.064	ENSCAFG00020009944	-	90	70.064	Canis_lupus_dingo
ENSELUG00000000815	SNRPC	50	94.872	ENSCAFG00020005945	-	100	78.616	Canis_lupus_dingo
ENSELUG00000000815	SNRPC	100	75.472	ENSCAFG00020017383	-	100	75.472	Canis_lupus_dingo
ENSELUG00000000815	SNRPC	50	93.590	ENSCHIG00000012087	-	100	77.987	Capra_hircus
ENSELUG00000000815	SNRPC	100	62.963	ENSCHIG00000005039	-	100	59.877	Capra_hircus
ENSELUG00000000815	SNRPC	100	64.151	ENSTSYG00000025721	-	100	63.354	Carlito_syrichta
ENSELUG00000000815	SNRPC	50	94.872	ENSTSYG00000011216	-	100	78.616	Carlito_syrichta
ENSELUG00000000815	SNRPC	50	91.026	ENSTSYG00000029745	-	75	76.510	Carlito_syrichta
ENSELUG00000000815	SNRPC	50	94.872	ENSCPOG00000008563	SNRPC	100	78.616	Cavia_porcellus
ENSELUG00000000815	SNRPC	100	75.472	ENSCCAG00000036059	-	89	75.472	Cebus_capucinus
ENSELUG00000000815	SNRPC	100	60.625	ENSCCAG00000028293	-	100	59.119	Cebus_capucinus
ENSELUG00000000815	SNRPC	98	66.879	ENSCCAG00000022751	-	96	71.338	Cebus_capucinus
ENSELUG00000000815	SNRPC	96	57.143	ENSCCAG00000022209	-	98	57.143	Cebus_capucinus
ENSELUG00000000815	SNRPC	50	94.872	ENSCATG00000035787	SNRPC	100	78.616	Cercocebus_atys
ENSELUG00000000815	SNRPC	50	94.872	ENSCLAG00000016920	SNRPC	100	78.616	Chinchilla_lanigera
ENSELUG00000000815	SNRPC	99	68.944	ENSCLAG00000010242	-	97	64.557	Chinchilla_lanigera
ENSELUG00000000815	SNRPC	50	94.872	ENSCSAG00000009821	SNRPC	53	87.234	Chlorocebus_sabaeus
ENSELUG00000000815	SNRPC	61	66.316	ENSCHOG00000011439	SNRPC	90	66.460	Choloepus_hoffmanni
ENSELUG00000000815	SNRPC	50	94.872	ENSCPBG00000027142	SNRPC	100	77.987	Chrysemys_picta_bellii
ENSELUG00000000815	SNRPC	50	94.872	ENSCANG00000028035	SNRPC	100	78.616	Colobus_angolensis_palliatus
ENSELUG00000000815	SNRPC	50	70.513	ENSCGRG00001021483	-	100	65.000	Cricetulus_griseus_chok1gshd
ENSELUG00000000815	SNRPC	100	83.019	ENSDARG00000009871	snrpc	100	83.019	Danio_rerio
ENSELUG00000000815	SNRPC	52	95.062	ENSDNOG00000042403	-	75	87.234	Dasypus_novemcinctus
ENSELUG00000000815	SNRPC	52	91.358	ENSDORG00000005955	Snrpc	66	66.463	Dipodomys_ordii
ENSELUG00000000815	SNRPC	50	92.308	ENSDORG00000029823	-	74	76.471	Dipodomys_ordii
ENSELUG00000000815	SNRPC	52	90.123	ENSETEG00000008756	-	77	88.750	Echinops_telfairi
ENSELUG00000000815	SNRPC	50	88.462	ENSETEG00000011265	-	60	79.787	Echinops_telfairi
ENSELUG00000000815	SNRPC	50	92.308	ENSETEG00000008268	-	100	75.641	Echinops_telfairi
ENSELUG00000000815	SNRPC	90	57.639	ENSEBUG00000011445	snrpc	57	57.732	Eptatretus_burgeri
ENSELUG00000000815	SNRPC	50	94.872	ENSEASG00005021007	SNRPC	100	78.616	Equus_asinus_asinus
ENSELUG00000000815	SNRPC	50	94.872	ENSECAG00000026848	SNRPC	100	78.616	Equus_caballus
ENSELUG00000000815	SNRPC	60	63.830	ENSEEUG00000014633	SNRPC	90	64.557	Erinaceus_europaeus
ENSELUG00000000815	SNRPC	50	94.872	ENSFCAG00000044077	-	100	78.616	Felis_catus
ENSELUG00000000815	SNRPC	50	93.590	ENSFCAG00000031775	-	88	74.522	Felis_catus
ENSELUG00000000815	SNRPC	50	94.872	ENSFDAG00000018111	SNRPC	100	78.616	Fukomys_damarensis
ENSELUG00000000815	SNRPC	50	94.872	ENSGAGG00000003063	SNRPC	100	77.987	Gopherus_agassizii
ENSELUG00000000815	SNRPC	50	94.872	ENSGGOG00000012499	SNRPC	100	78.616	Gorilla_gorilla
ENSELUG00000000815	SNRPC	100	70.440	ENSHGLG00000017741	-	100	70.440	Heterocephalus_glaber_female
ENSELUG00000000815	SNRPC	50	94.872	ENSHGLG00000013981	SNRPC	100	78.616	Heterocephalus_glaber_female
ENSELUG00000000815	SNRPC	82	66.406	ENSHGLG00000005871	-	98	58.974	Heterocephalus_glaber_female
ENSELUG00000000815	SNRPC	50	94.872	ENSHGLG00100009478	SNRPC	100	78.616	Heterocephalus_glaber_male
ENSELUG00000000815	SNRPC	100	75.472	ENSHGLG00100017764	-	100	75.472	Heterocephalus_glaber_male
ENSELUG00000000815	SNRPC	100	70.440	ENSHGLG00100010786	-	100	70.440	Heterocephalus_glaber_male
ENSELUG00000000815	SNRPC	100	82.390	ENSIPUG00000024851	snrpc	100	82.390	Ictalurus_punctatus
ENSELUG00000000815	SNRPC	50	94.872	ENSSTOG00000013786	SNRPC	100	78.616	Ictidomys_tridecemlineatus
ENSELUG00000000815	SNRPC	50	96.154	ENSLACG00000013753	SNRPC	89	81.250	Latimeria_chalumnae
ENSELUG00000000815	SNRPC	50	94.872	ENSLAFG00000013534	SNRPC	100	78.616	Loxodonta_africana
ENSELUG00000000815	SNRPC	50	94.872	ENSMFAG00000030525	-	100	77.987	Macaca_fascicularis
ENSELUG00000000815	SNRPC	50	94.872	ENSMFAG00000031764	-	100	78.616	Macaca_fascicularis
ENSELUG00000000815	SNRPC	100	77.358	ENSMMUG00000039415	-	100	77.358	Macaca_mulatta
ENSELUG00000000815	SNRPC	50	94.872	ENSMMUG00000000869	-	100	73.585	Macaca_mulatta
ENSELUG00000000815	SNRPC	100	70.440	ENSMMUG00000045425	-	100	70.440	Macaca_mulatta
ENSELUG00000000815	SNRPC	50	94.872	ENSMNEG00000032731	SNRPC	100	78.616	Macaca_nemestrina
ENSELUG00000000815	SNRPC	50	94.872	ENSMLEG00000033916	-	100	78.616	Mandrillus_leucophaeus
ENSELUG00000000815	SNRPC	97	60.256	ENSMLEG00000039724	-	81	52.597	Mandrillus_leucophaeus
ENSELUG00000000815	SNRPC	97	72.258	ENSMLEG00000040224	-	90	71.338	Mandrillus_leucophaeus
ENSELUG00000000815	SNRPC	100	78.616	ENSMICG00000032183	-	100	78.616	Microcebus_murinus
ENSELUG00000000815	SNRPC	100	65.409	ENSMICG00000036552	-	87	66.026	Microcebus_murinus
ENSELUG00000000815	SNRPC	50	94.872	ENSMICG00000009130	-	100	65.409	Microcebus_murinus
ENSELUG00000000815	SNRPC	50	94.872	ENSMICG00000007339	-	100	79.245	Microcebus_murinus
ENSELUG00000000815	SNRPC	50	88.462	ENSMODG00000025263	-	100	60.625	Monodelphis_domestica
ENSELUG00000000815	SNRPC	50	96.154	ENSMODG00000013904	-	100	79.245	Monodelphis_domestica
ENSELUG00000000815	SNRPC	100	68.750	ENSMALG00000001197	snrpc	100	73.750	Monopterus_albus
ENSELUG00000000815	SNRPC	50	91.026	ENSMPUG00000003210	SNRPC	99	77.848	Mustela_putorius_furo
ENSELUG00000000815	SNRPC	50	91.026	ENSMLUG00000002488	SNRPC	99	77.848	Myotis_lucifugus
ENSELUG00000000815	SNRPC	50	94.872	ENSNLEG00000034810	SNRPC	100	78.616	Nomascus_leucogenys
ENSELUG00000000815	SNRPC	50	94.872	ENSODEG00000017080	-	100	78.616	Octodon_degus
ENSELUG00000000815	SNRPC	50	93.590	ENSODEG00000020201	-	100	77.987	Octodon_degus
ENSELUG00000000815	SNRPC	50	94.872	ENSODEG00000020370	-	100	78.616	Octodon_degus
ENSELUG00000000815	SNRPC	50	93.590	ENSODEG00000019633	-	100	77.358	Octodon_degus
ENSELUG00000000815	SNRPC	50	94.872	ENSODEG00000018985	-	100	78.616	Octodon_degus
ENSELUG00000000815	SNRPC	78	75.610	ENSODEG00000006008	-	68	81.915	Octodon_degus
ENSELUG00000000815	SNRPC	68	71.171	ENSOANG00000003405	SNRPC	100	72.973	Ornithorhynchus_anatinus
ENSELUG00000000815	SNRPC	61	86.316	ENSOCUG00000023292	-	100	77.358	Oryctolagus_cuniculus
ENSELUG00000000815	SNRPC	50	94.872	ENSOCUG00000026430	-	99	77.358	Oryctolagus_cuniculus
ENSELUG00000000815	SNRPC	50	94.872	ENSOCUG00000026668	-	100	78.616	Oryctolagus_cuniculus
ENSELUG00000000815	SNRPC	61	85.263	ENSOGAG00000026269	-	100	76.730	Otolemur_garnettii
ENSELUG00000000815	SNRPC	50	94.872	ENSOARG00000010823	SNRPC	100	78.616	Ovis_aries
ENSELUG00000000815	SNRPC	50	94.872	ENSPPAG00000043871	SNRPC	100	78.616	Pan_paniscus
ENSELUG00000000815	SNRPC	50	94.872	ENSPPRG00000008647	-	100	78.616	Panthera_pardus
ENSELUG00000000815	SNRPC	52	47.674	ENSPPRG00000016017	-	62	45.714	Panthera_pardus
ENSELUG00000000815	SNRPC	100	54.717	ENSPPRG00000010967	-	89	49.686	Panthera_pardus
ENSELUG00000000815	SNRPC	100	45.625	ENSPTIG00000011880	-	88	40.881	Panthera_tigris_altaica
ENSELUG00000000815	SNRPC	55	77.273	ENSPTIG00000013329	-	61	72.340	Panthera_tigris_altaica
ENSELUG00000000815	SNRPC	50	94.872	ENSPTIG00000021867	-	100	78.616	Panthera_tigris_altaica
ENSELUG00000000815	SNRPC	50	94.872	ENSPTRG00000018070	SNRPC	100	78.616	Pan_troglodytes
ENSELUG00000000815	SNRPC	50	94.872	ENSPANG00000022802	-	100	78.616	Papio_anubis
ENSELUG00000000815	SNRPC	100	69.182	ENSPANG00000018228	-	94	69.182	Papio_anubis
ENSELUG00000000815	SNRPC	60	95.745	ENSPKIG00000003136	snrpc	100	85.161	Paramormyrops_kingsleyae
ENSELUG00000000815	SNRPC	100	76.730	ENSPKIG00000001671	SNRPC	100	76.730	Paramormyrops_kingsleyae
ENSELUG00000000815	SNRPC	59	67.391	ENSPMGG00000022162	snrpc	100	75.159	Periophthalmus_magnuspinnatus
ENSELUG00000000815	SNRPC	100	73.620	ENSPEMG00000002763	-	100	70.000	Peromyscus_maniculatus_bairdii
ENSELUG00000000815	SNRPC	99	64.744	ENSPMAG00000000602	snrpc	59	76.344	Petromyzon_marinus
ENSELUG00000000815	SNRPC	59	64.894	ENSPREG00000013017	snrpc	79	60.256	Poecilia_reticulata
ENSELUG00000000815	SNRPC	52	95.062	ENSPPYG00000029902	-	81	91.358	Pongo_abelii
ENSELUG00000000815	SNRPC	50	91.026	ENSPCAG00000016885	SNRPC	90	77.848	Procavia_capensis
ENSELUG00000000815	SNRPC	50	94.872	ENSPCOG00000004904	SNRPC	100	78.616	Propithecus_coquereli
ENSELUG00000000815	SNRPC	50	89.744	ENSPVAG00000015597	SNRPC	87	77.070	Pteropus_vampyrus
ENSELUG00000000815	SNRPC	85	67.669	ENSPNYG00000004900	snrpc	59	65.957	Pundamilia_nyererei
ENSELUG00000000815	SNRPC	100	83.019	ENSPNAG00000012799	snrpc	100	80.503	Pygocentrus_nattereri
ENSELUG00000000815	SNRPC	50	94.872	ENSRBIG00000037567	-	100	78.616	Rhinopithecus_bieti
ENSELUG00000000815	SNRPC	50	94.872	ENSRBIG00000014819	-	100	78.616	Rhinopithecus_bieti
ENSELUG00000000815	SNRPC	50	94.872	ENSRBIG00000022998	-	100	77.987	Rhinopithecus_bieti
ENSELUG00000000815	SNRPC	50	94.872	ENSRROG00000041300	SNRPC	100	78.616	Rhinopithecus_roxellana
ENSELUG00000000815	SNRPC	98	69.375	ENSSBOG00000023189	-	91	66.667	Saimiri_boliviensis_boliviensis
ENSELUG00000000815	SNRPC	50	94.872	ENSSBOG00000031528	-	100	78.616	Saimiri_boliviensis_boliviensis
ENSELUG00000000815	SNRPC	98	64.744	ENSSBOG00000032882	-	93	64.103	Saimiri_boliviensis_boliviensis
ENSELUG00000000815	SNRPC	94	64.189	ENSSBOG00000032361	-	64	69.149	Saimiri_boliviensis_boliviensis
ENSELUG00000000815	SNRPC	50	88.462	ENSSHAG00000002972	-	100	60.625	Sarcophilus_harrisii
ENSELUG00000000815	SNRPC	59	95.652	ENSSFOG00015022422	snrpc	96	85.235	Scleropages_formosus
ENSELUG00000000815	SNRPC	60	89.362	ENSSFOG00015019150	snrpc	100	77.358	Scleropages_formosus
ENSELUG00000000815	SNRPC	100	64.151	ENSSARG00000008970	SNRPC	91	62.963	Sorex_araneus
ENSELUG00000000815	SNRPC	50	94.872	ENSSSCG00000001531	SNRPC	100	78.616	Sus_scrofa
ENSELUG00000000815	SNRPC	100	73.292	ENSTNIG00000018307	snrpc	100	76.543	Tetraodon_nigroviridis
ENSELUG00000000815	SNRPC	62	81.633	ENSTBEG00000013022	-	95	74.324	Tupaia_belangeri
ENSELUG00000000815	SNRPC	50	57.692	ENSTBEG00000016759	-	79	56.338	Tupaia_belangeri
ENSELUG00000000815	SNRPC	61	80.000	ENSTBEG00000015356	-	94	65.101	Tupaia_belangeri
ENSELUG00000000815	SNRPC	50	91.026	ENSTTRG00000007827	SNRPC	87	77.848	Tursiops_truncatus
ENSELUG00000000815	SNRPC	50	94.872	ENSUAMG00000014125	SNRPC	64	87.234	Ursus_americanus
ENSELUG00000000815	SNRPC	50	94.872	ENSUMAG00000010869	SNRPC	53	87.234	Ursus_maritimus
ENSELUG00000000815	SNRPC	89	61.268	ENSVPAG00000003106	SNRPC	79	61.268	Vicugna_pacos
ENSELUG00000000815	SNRPC	50	92.308	ENSVVUG00000021947	-	100	77.358	Vulpes_vulpes
ENSELUG00000000815	SNRPC	97	70.886	ENSVVUG00000010467	-	87	73.718	Vulpes_vulpes
ENSELUG00000000815	SNRPC	100	65.000	ENSXETG00000024721	snrpc	100	76.730	Xenopus_tropicalis