EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000001361 (Gene tree)
Gene ID: 105013285
Gene Symbol: msi2b
Alias: zgc:174035|zgc:63812
Full Name: RNA-binding protein Musashi homolog 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 239871 bases
Position: chrLG01:25686732-25926602
Accession: 105013285
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000016457	RRM_1	PF00076.22	1.7e-32	1	2
ENSELUP00000016457	RRM_1	PF00076.22	1.7e-32	2	2
ENSELUP00000036858	RRM_1	PF00076.22	1.7e-32	1	2
ENSELUP00000036858	RRM_1	PF00076.22	1.7e-32	2	2
ENSELUP00000016414	RRM_1	PF00076.22	2.5e-28	1	2
ENSELUP00000016414	RRM_1	PF00076.22	2.5e-28	2	2
ENSELUP00000016428	RRM_1	PF00076.22	6.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000025749	-	1008	-	ENSELUP00000016414	335 (aa)	-	-
ENSELUT00000039767	-	1346	-	ENSELUP00000016428	169 (aa)	-	-
ENSELUT00000025789	-	6054	XM_010874835	ENSELUP00000036858	396 (aa)	XP_010873137	UPI0005775D02
ENSELUT00000025795	-	6131	XM_010874750	ENSELUP00000016457	395 (aa)	XP_010873052	UPI000577154D

Gene Model

Click here to download ENSELUG00000001361's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000001361's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000001361	msi2b	73	41.772	ENSELUG00000010286	dazap1	53	42.935
ENSELUG00000001361	msi2b	97	93.717	ENSELUG00000011747	msi2a	97	93.834
ENSELUG00000001361	msi2b	94	69.394	ENSELUG00000023280	-	100	69.394
ENSELUG00000001361	msi2b	79	50.000	ENSELUG00000015443	hnrnpaba	59	46.890
ENSELUG00000001361	msi2b	67	40.909	ENSELUG00000014407	-	96	40.127
ENSELUG00000001361	msi2b	72	49.587	ENSELUG00000003230	hnrnpd	82	39.683
ENSELUG00000001361	msi2b	80	50.360	ENSELUG00000020765	hnrnpabb	65	50.360
ENSELUG00000001361	msi2b	94	65.282	ENSELUG00000023219	MSI1	92	65.672
ENSELUG00000001361	msi2b	67	43.966	ENSELUG00000023080	hnrnpa3	68	39.241
ENSELUG00000001361	msi2b	67	46.552	ENSELUG00000007372	-	50	41.860
ENSELUG00000001361	msi2b	70	52.941	ENSELUG00000003241	hnrnpdl	84	39.777
ENSELUG00000001361	msi2b	78	34.559	ENSELUG00000013252	tardbpl	55	34.337
ENSELUG00000001361	msi2b	68	46.154	ENSELUG00000020089	-	87	37.113
ENSELUG00000001361	msi2b	72	37.975	ENSELUG00000014398	-	80	35.470

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000001361	msi2b	93	92.332	ENSG00000153944	MSI2	100	92.332	Homo_sapiens
ENSELUG00000001361	msi2b	100	88.657	ENSAPOG00000001658	msi2a	100	95.902	Acanthochromis_polyacanthus
ENSELUG00000001361	msi2b	93	92.332	ENSAMEG00000002697	MSI2	99	92.332	Ailuropoda_melanoleuca
ENSELUG00000001361	msi2b	100	87.218	ENSACIG00000009475	msi2a	100	87.218	Amphilophus_citrinellus
ENSELUG00000001361	msi2b	80	85.294	ENSAOCG00000014822	msi2a	69	87.500	Amphiprion_ocellaris
ENSELUG00000001361	msi2b	100	88.657	ENSAPEG00000007706	msi2a	100	88.657	Amphiprion_percula
ENSELUG00000001361	msi2b	100	88.657	ENSATEG00000010498	msi2a	100	95.902	Anabas_testudineus
ENSELUG00000001361	msi2b	93	89.298	ENSATEG00000003301	-	100	89.298	Anabas_testudineus
ENSELUG00000001361	msi2b	89	95.109	ENSACAG00000005452	MSI2	88	82.500	Anolis_carolinensis
ENSELUG00000001361	msi2b	100	83.714	ENSANAG00000037827	MSI2	91	95.067	Aotus_nancymaae
ENSELUG00000001361	msi2b	100	88.060	ENSACLG00000007752	msi2a	100	95.492	Astatotilapia_calliptera
ENSELUG00000001361	msi2b	100	93.165	ENSAMXG00000010474	msi2b	100	95.385	Astyanax_mexicanus
ENSELUG00000001361	msi2b	100	92.424	ENSAMXG00000032796	msi2a	100	92.677	Astyanax_mexicanus
ENSELUG00000001361	msi2b	93	87.859	ENSBTAG00000004406	MSI2	97	87.859	Bos_taurus
ENSELUG00000001361	msi2b	73	68.908	WBGene00003423	msi-1	77	59.514	Caenorhabditis_elegans
ENSELUG00000001361	msi2b	100	83.714	ENSCJAG00000013998	MSI2	91	95.067	Callithrix_jacchus
ENSELUG00000001361	msi2b	93	92.308	ENSCAFG00020025620	MSI2	81	92.332	Canis_lupus_dingo
ENSELUG00000001361	msi2b	96	84.226	ENSCHIG00000016580	MSI2	100	82.571	Capra_hircus
ENSELUG00000001361	msi2b	93	83.498	ENSCPOG00000034042	MSI2	99	83.498	Cavia_porcellus
ENSELUG00000001361	msi2b	100	83.714	ENSCCAG00000033927	MSI2	91	95.067	Cebus_capucinus
ENSELUG00000001361	msi2b	96	84.320	ENSCATG00000040879	MSI2	91	95.067	Cercocebus_atys
ENSELUG00000001361	msi2b	100	87.429	ENSCLAG00000014325	MSI2	100	87.429	Chinchilla_lanigera
ENSELUG00000001361	msi2b	100	83.714	ENSCSAG00000005633	MSI2	100	83.714	Chlorocebus_sabaeus
ENSELUG00000001361	msi2b	69	88.235	ENSCHOG00000008660	MSI2	83	88.235	Choloepus_hoffmanni
ENSELUG00000001361	msi2b	89	95.082	ENSCPBG00000009942	MSI2	89	96.133	Chrysemys_picta_bellii
ENSELUG00000001361	msi2b	76	62.222	ENSCING00000018579	-	97	46.281	Ciona_intestinalis
ENSELUG00000001361	msi2b	78	62.143	ENSCSAVG00000010397	-	67	69.378	Ciona_savignyi
ENSELUG00000001361	msi2b	93	92.332	ENSCANG00000036414	MSI2	100	92.332	Colobus_angolensis_palliatus
ENSELUG00000001361	msi2b	100	83.191	ENSCGRG00001013330	Msi2	100	83.191	Cricetulus_griseus_chok1gshd
ENSELUG00000001361	msi2b	93	92.038	ENSCGRG00000003141	Msi2	100	92.038	Cricetulus_griseus_crigri
ENSELUG00000001361	msi2b	99	81.752	ENSCSEG00000003266	-	100	77.168	Cynoglossus_semilaevis
ENSELUG00000001361	msi2b	69	84.615	ENSCSEG00000013557	msi2a	79	84.615	Cynoglossus_semilaevis
ENSELUG00000001361	msi2b	81	92.701	ENSCSEG00000013549	msi2a	100	75.000	Cynoglossus_semilaevis
ENSELUG00000001361	msi2b	100	91.899	ENSCVAG00000017075	msi2a	100	95.902	Cyprinodon_variegatus
ENSELUG00000001361	msi2b	100	88.193	ENSDARG00000032614	msi2b	100	99.010	Danio_rerio
ENSELUG00000001361	msi2b	100	88.861	ENSDARG00000033901	msi2a	100	88.861	Danio_rerio
ENSELUG00000001361	msi2b	93	88.026	ENSDNOG00000014501	MSI2	100	88.026	Dasypus_novemcinctus
ENSELUG00000001361	msi2b	67	97.345	ENSDORG00000028440	-	100	97.345	Dipodomys_ordii
ENSELUG00000001361	msi2b	82	75.688	ENSDORG00000005394	Msi2	84	90.769	Dipodomys_ordii
ENSELUG00000001361	msi2b	89	63.750	FBgn0260943	Rbp6	88	66.667	Drosophila_melanogaster
ENSELUG00000001361	msi2b	67	100.000	ENSETEG00000012450	-	64	73.026	Echinops_telfairi
ENSELUG00000001361	msi2b	93	66.139	ENSEBUG00000006732	msi2a	87	66.139	Eptatretus_burgeri
ENSELUG00000001361	msi2b	93	83.654	ENSEASG00005002965	MSI2	97	83.284	Equus_asinus_asinus
ENSELUG00000001361	msi2b	100	85.196	ENSECAG00000011435	MSI2	100	85.196	Equus_caballus
ENSELUG00000001361	msi2b	87	73.358	ENSEEUG00000007810	MSI2	100	73.358	Erinaceus_europaeus
ENSELUG00000001361	msi2b	80	78.676	ENSFCAG00000033787	-	85	73.457	Felis_catus
ENSELUG00000001361	msi2b	100	83.714	ENSFCAG00000041686	MSI2	91	95.067	Felis_catus
ENSELUG00000001361	msi2b	93	92.332	ENSFDAG00000016118	MSI2	100	92.332	Fukomys_damarensis
ENSELUG00000001361	msi2b	100	88.060	ENSFHEG00000000084	msi2a	96	95.425	Fundulus_heteroclitus
ENSELUG00000001361	msi2b	62	94.286	ENSGMOG00000007596	-	100	94.286	Gadus_morhua
ENSELUG00000001361	msi2b	100	87.714	ENSGALG00000005567	MSI2	100	87.714	Gallus_gallus
ENSELUG00000001361	msi2b	98	82.424	ENSGAFG00000006974	msi2a	90	96.053	Gambusia_affinis
ENSELUG00000001361	msi2b	93	90.228	ENSGAGG00000016542	MSI2	100	90.228	Gopherus_agassizii
ENSELUG00000001361	msi2b	93	92.332	ENSGGOG00000013182	MSI2	100	92.332	Gorilla_gorilla
ENSELUG00000001361	msi2b	100	88.060	ENSHBUG00000020800	msi2a	100	95.492	Haplochromis_burtoni
ENSELUG00000001361	msi2b	100	78.571	ENSHGLG00000012444	MSI2	100	78.571	Heterocephalus_glaber_female
ENSELUG00000001361	msi2b	67	96.491	ENSHGLG00100004028	-	87	97.368	Heterocephalus_glaber_male
ENSELUG00000001361	msi2b	79	90.000	ENSHGLG00100003744	MSI2	100	90.000	Heterocephalus_glaber_male
ENSELUG00000001361	msi2b	100	85.749	ENSHCOG00000000266	msi2a	100	86.957	Hippocampus_comes
ENSELUG00000001361	msi2b	97	72.482	ENSHCOG00000017241	-	98	71.675	Hippocampus_comes
ENSELUG00000001361	msi2b	100	86.269	ENSIPUG00000021097	msi2a	100	96.311	Ictalurus_punctatus
ENSELUG00000001361	msi2b	100	92.658	ENSIPUG00000003732	msi2b	100	92.658	Ictalurus_punctatus
ENSELUG00000001361	msi2b	93	83.498	ENSSTOG00000007884	MSI2	99	83.498	Ictidomys_tridecemlineatus
ENSELUG00000001361	msi2b	79	79.524	ENSJJAG00000006292	-	100	79.524	Jaculus_jaculus
ENSELUG00000001361	msi2b	67	97.345	ENSJJAG00000009467	-	100	97.345	Jaculus_jaculus
ENSELUG00000001361	msi2b	100	91.139	ENSKMAG00000009494	msi2a	100	91.139	Kryptolebias_marmoratus
ENSELUG00000001361	msi2b	94	78.674	ENSLBEG00000026223	-	100	78.674	Labrus_bergylta
ENSELUG00000001361	msi2b	100	88.657	ENSLBEG00000007061	msi2a	100	88.657	Labrus_bergylta
ENSELUG00000001361	msi2b	54	93.478	ENSLACG00000016798	MSI2	98	93.478	Latimeria_chalumnae
ENSELUG00000001361	msi2b	100	94.430	ENSLOCG00000004675	msi2b	100	94.430	Lepisosteus_oculatus
ENSELUG00000001361	msi2b	93	92.332	ENSMFAG00000003775	MSI2	100	92.332	Macaca_fascicularis
ENSELUG00000001361	msi2b	93	92.332	ENSMMUG00000002069	MSI2	100	92.332	Macaca_mulatta
ENSELUG00000001361	msi2b	100	83.714	ENSMNEG00000045275	MSI2	91	95.067	Macaca_nemestrina
ENSELUG00000001361	msi2b	93	92.332	ENSMLEG00000033888	MSI2	100	92.332	Mandrillus_leucophaeus
ENSELUG00000001361	msi2b	100	88.095	ENSMAMG00000010503	msi2a	100	95.902	Mastacembelus_armatus
ENSELUG00000001361	msi2b	100	86.866	ENSMAMG00000002488	-	99	95.395	Mastacembelus_armatus
ENSELUG00000001361	msi2b	100	88.060	ENSMZEG00005007676	msi2a	100	95.492	Maylandia_zebra
ENSELUG00000001361	msi2b	100	86.895	ENSMAUG00000003862	Msi2	100	86.895	Mesocricetus_auratus
ENSELUG00000001361	msi2b	100	83.714	ENSMICG00000013598	-	91	95.067	Microcebus_murinus
ENSELUG00000001361	msi2b	100	67.429	ENSMICG00000032913	-	93	88.333	Microcebus_murinus
ENSELUG00000001361	msi2b	100	87.143	ENSMOCG00000005820	Msi2	100	87.143	Microtus_ochrogaster
ENSELUG00000001361	msi2b	96	80.580	ENSMMOG00000008348	msi2a	90	95.652	Mola_mola
ENSELUG00000001361	msi2b	79	89.524	ENSMODG00000014790	MSI2	100	89.524	Monodelphis_domestica
ENSELUG00000001361	msi2b	100	95.455	ENSMALG00000000071	msi2a	100	95.902	Monopterus_albus
ENSELUG00000001361	msi2b	100	87.143	MGP_CAROLIEiJ_G0016948	Msi2	100	97.345	Mus_caroli
ENSELUG00000001361	msi2b	100	87.143	ENSMUSG00000069769	Msi2	100	97.345	Mus_musculus
ENSELUG00000001361	msi2b	100	87.143	MGP_PahariEiJ_G0018079	Msi2	100	97.345	Mus_pahari
ENSELUG00000001361	msi2b	100	87.143	MGP_SPRETEiJ_G0017795	Msi2	100	97.345	Mus_spretus
ENSELUG00000001361	msi2b	93	88.179	ENSMPUG00000015377	MSI2	97	88.179	Mustela_putorius_furo
ENSELUG00000001361	msi2b	99	84.848	ENSMLUG00000007865	MSI2	95	84.848	Myotis_lucifugus
ENSELUG00000001361	msi2b	100	87.143	ENSNGAG00000017807	Msi2	100	87.143	Nannospalax_galili
ENSELUG00000001361	msi2b	100	91.646	ENSNBRG00000014596	msi2a	100	91.646	Neolamprologus_brichardi
ENSELUG00000001361	msi2b	93	92.332	ENSNLEG00000008059	MSI2	99	92.332	Nomascus_leucogenys
ENSELUG00000001361	msi2b	75	79.661	ENSOPRG00000000872	-	64	84.868	Ochotona_princeps
ENSELUG00000001361	msi2b	100	87.429	ENSODEG00000011974	MSI2	100	87.429	Octodon_degus
ENSELUG00000001361	msi2b	80	96.324	ENSONIG00000001972	msi2a	84	96.053	Oreochromis_niloticus
ENSELUG00000001361	msi2b	95	74.940	ENSOANG00000005667	MSI2	96	78.889	Ornithorhynchus_anatinus
ENSELUG00000001361	msi2b	93	88.179	ENSOCUG00000010440	MSI2	97	88.179	Oryctolagus_cuniculus
ENSELUG00000001361	msi2b	100	91.899	ENSORLG00000009671	msi2a	100	95.902	Oryzias_latipes
ENSELUG00000001361	msi2b	100	86.269	ENSORLG00020021556	msi2a	100	95.902	Oryzias_latipes_hni
ENSELUG00000001361	msi2b	100	91.899	ENSORLG00015004592	msi2a	100	95.902	Oryzias_latipes_hsok
ENSELUG00000001361	msi2b	100	91.899	ENSOMEG00000000146	msi2a	100	95.902	Oryzias_melastigma
ENSELUG00000001361	msi2b	93	84.026	ENSOGAG00000005621	MSI2	99	84.026	Otolemur_garnettii
ENSELUG00000001361	msi2b	93	92.332	ENSPPAG00000037697	MSI2	100	92.332	Pan_paniscus
ENSELUG00000001361	msi2b	93	88.179	ENSPPRG00000001848	MSI2	91	95.067	Panthera_pardus
ENSELUG00000001361	msi2b	93	92.332	ENSPTIG00000021678	MSI2	96	92.332	Panthera_tigris_altaica
ENSELUG00000001361	msi2b	86	64.138	ENSPTIG00000021873	-	91	74.274	Panthera_tigris_altaica
ENSELUG00000001361	msi2b	93	92.332	ENSPTRG00000009437	MSI2	100	92.332	Pan_troglodytes
ENSELUG00000001361	msi2b	100	83.714	ENSPANG00000022319	MSI2	91	95.067	Papio_anubis
ENSELUG00000001361	msi2b	54	96.739	ENSPKIG00000017107	-	81	96.739	Paramormyrops_kingsleyae
ENSELUG00000001361	msi2b	100	81.612	ENSPKIG00000007038	-	96	94.262	Paramormyrops_kingsleyae
ENSELUG00000001361	msi2b	100	86.199	ENSPSIG00000008618	MSI2	100	86.199	Pelodiscus_sinensis
ENSELUG00000001361	msi2b	100	88.657	ENSPMGG00000005888	msi2a	100	88.657	Periophthalmus_magnuspinnatus
ENSELUG00000001361	msi2b	67	97.345	ENSPEMG00000021793	-	100	97.345	Peromyscus_maniculatus_bairdii
ENSELUG00000001361	msi2b	100	86.034	ENSPCIG00000006063	MSI2	100	86.034	Phascolarctos_cinereus
ENSELUG00000001361	msi2b	63	94.340	ENSPFOG00000019337	MSI2	92	94.340	Poecilia_formosa
ENSELUG00000001361	msi2b	80	96.324	ENSPLAG00000000436	msi2a	76	93.007	Poecilia_latipinna
ENSELUG00000001361	msi2b	80	85.294	ENSPMEG00000013247	msi2a	80	91.473	Poecilia_mexicana
ENSELUG00000001361	msi2b	100	86.232	ENSPREG00000000881	msi2a	100	87.681	Poecilia_reticulata
ENSELUG00000001361	msi2b	93	83.784	ENSPPYG00000008244	-	100	83.784	Pongo_abelii
ENSELUG00000001361	msi2b	61	86.765	ENSPCAG00000010552	MSI2	100	60.232	Procavia_capensis
ENSELUG00000001361	msi2b	76	88.281	ENSPCOG00000019195	-	93	96.947	Propithecus_coquereli
ENSELUG00000001361	msi2b	93	81.150	ENSPVAG00000017053	MSI2	100	86.463	Pteropus_vampyrus
ENSELUG00000001361	msi2b	100	88.060	ENSPNYG00000018393	msi2a	100	95.492	Pundamilia_nyererei
ENSELUG00000001361	msi2b	100	92.929	ENSPNAG00000000844	msi2b	100	95.385	Pygocentrus_nattereri
ENSELUG00000001361	msi2b	100	92.929	ENSPNAG00000014957	msi2a	100	92.929	Pygocentrus_nattereri
ENSELUG00000001361	msi2b	93	87.625	ENSRNOG00000025338	Msi2	100	87.625	Rattus_norvegicus
ENSELUG00000001361	msi2b	54	73.913	ENSRBIG00000032064	-	84	88.312	Rhinopithecus_bieti
ENSELUG00000001361	msi2b	67	97.368	ENSRROG00000034421	-	92	97.368	Rhinopithecus_roxellana
ENSELUG00000001361	msi2b	93	92.332	ENSSBOG00000026425	MSI2	100	92.332	Saimiri_boliviensis_boliviensis
ENSELUG00000001361	msi2b	93	92.332	ENSSHAG00000008672	MSI2	100	92.332	Sarcophilus_harrisii
ENSELUG00000001361	msi2b	100	72.048	ENSSFOG00015012168	msi2b	100	72.048	Scleropages_formosus
ENSELUG00000001361	msi2b	94	84.395	ENSSFOG00015021687	-	97	93.694	Scleropages_formosus
ENSELUG00000001361	msi2b	100	88.358	ENSSMAG00000018484	msi2a	100	95.902	Scophthalmus_maximus
ENSELUG00000001361	msi2b	100	88.657	ENSSDUG00000014507	msi2a	100	95.902	Seriola_dumerili
ENSELUG00000001361	msi2b	100	84.438	ENSSDUG00000021968	-	99	94.737	Seriola_dumerili
ENSELUG00000001361	msi2b	54	80.435	ENSSLDG00000021332	-	68	80.435	Seriola_lalandi_dorsalis
ENSELUG00000001361	msi2b	100	88.657	ENSSLDG00000017172	msi2a	100	95.902	Seriola_lalandi_dorsalis
ENSELUG00000001361	msi2b	89	88.667	ENSSPUG00000000913	-	96	92.073	Sphenodon_punctatus
ENSELUG00000001361	msi2b	100	86.473	ENSSPAG00000017793	msi2a	100	95.902	Stegastes_partitus
ENSELUG00000001361	msi2b	93	92.332	ENSSSCG00000038505	MSI2	100	94.262	Sus_scrofa
ENSELUG00000001361	msi2b	79	90.952	ENSTGUG00000008452	MSI2	100	90.952	Taeniopygia_guttata
ENSELUG00000001361	msi2b	100	82.073	ENSTRUG00000021248	msi2a	96	86.139	Takifugu_rubripes
ENSELUG00000001361	msi2b	80	77.941	ENSTBEG00000001241	MSI2	73	78.189	Tupaia_belangeri
ENSELUG00000001361	msi2b	93	76.336	ENSTTRG00000002189	MSI2	91	96.053	Tursiops_truncatus
ENSELUG00000001361	msi2b	93	88.179	ENSUAMG00000000700	MSI2	96	95.946	Ursus_americanus
ENSELUG00000001361	msi2b	90	80.070	ENSUMAG00000000505	MSI2	100	95.337	Ursus_maritimus
ENSELUG00000001361	msi2b	68	96.040	ENSVPAG00000006837	-	62	82.967	Vicugna_pacos
ENSELUG00000001361	msi2b	100	87.429	ENSVVUG00000011783	MSI2	97	94.712	Vulpes_vulpes
ENSELUG00000001361	msi2b	100	89.620	ENSXCOG00000006113	msi2a	100	89.620	Xiphophorus_couchianus
ENSELUG00000001361	msi2b	100	85.990	ENSXMAG00000000608	msi2a	100	95.902	Xiphophorus_maculatus