EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000001417 (Gene tree)
Gene ID: 105022009
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC105022009
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 13130 bases
Position: chrLG21:18318042-18331171
Accession: 105022009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000011642	La	PF05383.17	1.1e-10	1	1
ENSELUP00000011682	La	PF05383.17	2.8e-10	1	1
ENSELUP00000011663	La	PF05383.17	2.8e-10	1	1
ENSELUP00000011597	La	PF05383.17	3.1e-10	1	1
ENSELUP00000011581	La	PF05383.17	3.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000000215	-	6547	XM_010890101	ENSELUP00000011581	1900 (aa)	XP_010888403	UPI0006618DB1
ENSELUT00000000191	-	9240	-	ENSELUP00000011597	1544 (aa)	-	-
ENSELUT00000000087	-	5565	-	ENSELUP00000011663	1393 (aa)	-	-
ENSELUT00000000132	-	3243	-	ENSELUP00000011642	619 (aa)	-	-
ENSELUT00000000049	-	5619	-	ENSELUP00000011682	1411 (aa)	-	-
ENSELUT00000000249	-	720	-	ENSELUP00000033614	239 (aa)	-	-

Gene Model

Click here to download ENSELUG00000001417's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000001417's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000001417	-	94	42.158	ENSELUG00000008626	LARP4B	89	41.727
ENSELUG00000001417	-	72	37.278	ENSELUG00000018650	larp4ab	65	36.832

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000001417	-	94	39.412	ENSG00000107929	LARP4B	89	39.883	Homo_sapiens
ENSELUG00000001417	-	94	42.675	ENSAPOG00000020531	LARP4B	87	41.890	Acanthochromis_polyacanthus
ENSELUG00000001417	-	94	41.088	ENSAMEG00000001810	LARP4B	90	41.504	Ailuropoda_melanoleuca
ENSELUG00000001417	-	88	40.765	ENSAOCG00000007887	-	74	70.833	Amphiprion_ocellaris
ENSELUG00000001417	-	94	42.411	ENSAPEG00000002512	LARP4B	87	41.776	Amphiprion_percula
ENSELUG00000001417	-	77	45.887	ENSATEG00000012614	LARP4B	88	41.485	Anabas_testudineus
ENSELUG00000001417	-	94	40.896	ENSAPLG00000003813	LARP4B	87	41.045	Anas_platyrhynchos
ENSELUG00000001417	-	94	41.493	ENSACAG00000002858	LARP4B	89	41.507	Anolis_carolinensis
ENSELUG00000001417	-	94	39.111	ENSANAG00000007531	-	89	39.439	Aotus_nancymaae
ENSELUG00000001417	-	94	44.141	ENSACLG00000026356	LARP4B	86	44.141	Astatotilapia_calliptera
ENSELUG00000001417	-	94	42.643	ENSAMXG00000003335	larp4b	91	42.643	Astyanax_mexicanus
ENSELUG00000001417	-	94	40.944	ENSBTAG00000013899	LARP4B	89	40.944	Bos_taurus
ENSELUG00000001417	-	94	38.667	ENSCJAG00000018434	LARP4B	89	38.996	Callithrix_jacchus
ENSELUG00000001417	-	94	40.964	ENSCAFG00020004209	LARP4B	87	48.130	Canis_lupus_dingo
ENSELUG00000001417	-	94	41.705	ENSCHIG00000013543	LARP4B	89	41.705	Capra_hircus
ENSELUG00000001417	-	74	42.495	ENSTSYG00000002568	LARP4B	84	43.301	Carlito_syrichta
ENSELUG00000001417	-	81	40.977	ENSCAPG00000009725	LARP4B	75	41.199	Cavia_aperea
ENSELUG00000001417	-	94	39.911	ENSCPOG00000009375	LARP4B	89	40.237	Cavia_porcellus
ENSELUG00000001417	-	94	38.963	ENSCCAG00000024869	LARP4B	89	39.291	Cebus_capucinus
ENSELUG00000001417	-	94	39.265	ENSCATG00000019750	LARP4B	89	39.736	Cercocebus_atys
ENSELUG00000001417	-	94	39.879	ENSCLAG00000011570	LARP4B	89	40.271	Chinchilla_lanigera
ENSELUG00000001417	-	94	41.348	ENSCPBG00000017063	LARP4B	89	41.501	Chrysemys_picta_bellii
ENSELUG00000001417	-	94	37.353	ENSCANG00000038021	LARP4B	89	37.830	Colobus_angolensis_palliatus
ENSELUG00000001417	-	94	40.148	ENSCGRG00001022930	Larp4b	86	49.005	Cricetulus_griseus_chok1gshd
ENSELUG00000001417	-	94	40.148	ENSCGRG00000006022	Larp4b	86	49.005	Cricetulus_griseus_crigri
ENSELUG00000001417	-	94	42.584	ENSCSEG00000007342	LARP4B	88	42.424	Cynoglossus_semilaevis
ENSELUG00000001417	-	77	47.937	ENSCVAG00000008910	LARP4B	87	42.835	Cyprinodon_variegatus
ENSELUG00000001417	-	94	43.288	ENSDARG00000062146	larp4b	90	43.288	Danio_rerio
ENSELUG00000001417	-	90	40.191	ENSDNOG00000045543	-	80	49.875	Dasypus_novemcinctus
ENSELUG00000001417	-	94	37.962	ENSDORG00000009328	Larp4b	86	45.274	Dipodomys_ordii
ENSELUG00000001417	-	79	41.716	ENSETEG00000011249	LARP4B	77	41.716	Echinops_telfairi
ENSELUG00000001417	-	94	40.819	ENSEASG00005019068	-	89	40.819	Equus_asinus_asinus
ENSELUG00000001417	-	94	40.696	ENSECAG00000024040	LARP4B	89	40.696	Equus_caballus
ENSELUG00000001417	-	94	41.220	ENSEEUG00000008391	LARP4B	88	41.246	Erinaceus_europaeus
ENSELUG00000001417	-	94	40.512	ENSFCAG00000000721	-	90	40.181	Felis_catus
ENSELUG00000001417	-	94	42.073	ENSFALG00000006961	LARP4B	89	42.226	Ficedula_albicollis
ENSELUG00000001417	-	94	39.583	ENSFDAG00000006158	LARP4B	86	39.971	Fukomys_damarensis
ENSELUG00000001417	-	94	39.969	ENSFHEG00000013037	LARP4B	65	76.471	Fundulus_heteroclitus
ENSELUG00000001417	-	55	47.863	ENSFHEG00000011539	-	91	45.024	Fundulus_heteroclitus
ENSELUG00000001417	-	53	53.412	ENSGMOG00000010818	-	55	53.488	Gadus_morhua
ENSELUG00000001417	-	94	40.729	ENSGALG00000006672	LARP4B	89	40.881	Gallus_gallus
ENSELUG00000001417	-	94	42.899	ENSGACG00000017535	LARP4B	90	42.836	Gasterosteus_aculeatus
ENSELUG00000001417	-	74	44.752	ENSGAGG00000008598	LARP4B	74	44.950	Gopherus_agassizii
ENSELUG00000001417	-	94	39.412	ENSGGOG00000003572	LARP4B	89	39.883	Gorilla_gorilla
ENSELUG00000001417	-	95	42.618	ENSHBUG00000007535	LARP4B	88	41.715	Haplochromis_burtoni
ENSELUG00000001417	-	94	39.763	ENSHGLG00000012936	LARP4B	86	48.756	Heterocephalus_glaber_female
ENSELUG00000001417	-	94	39.881	ENSHGLG00100016220	-	89	40.059	Heterocephalus_glaber_male
ENSELUG00000001417	-	77	42.262	ENSHGLG00100017261	-	84	42.262	Heterocephalus_glaber_male
ENSELUG00000001417	-	94	41.452	ENSHCOG00000011581	LARP4B	76	41.440	Hippocampus_comes
ENSELUG00000001417	-	99	43.510	ENSIPUG00000009705	larp4b	91	44.580	Ictalurus_punctatus
ENSELUG00000001417	-	94	41.176	ENSSTOG00000000587	LARP4B	86	49.373	Ictidomys_tridecemlineatus
ENSELUG00000001417	-	94	40.359	ENSJJAG00000020847	Larp4b	89	40.835	Jaculus_jaculus
ENSELUG00000001417	-	94	42.835	ENSKMAG00000021674	LARP4B	87	43.345	Kryptolebias_marmoratus
ENSELUG00000001417	-	77	46.995	ENSLBEG00000025293	-	74	46.886	Labrus_bergylta
ENSELUG00000001417	-	74	44.576	ENSLACG00000009492	LARP4B	74	44.316	Latimeria_chalumnae
ENSELUG00000001417	-	94	42.256	ENSLOCG00000012290	larp4b	89	42.643	Lepisosteus_oculatus
ENSELUG00000001417	-	94	40.902	ENSLAFG00000015334	LARP4B	89	41.053	Loxodonta_africana
ENSELUG00000001417	-	94	39.265	ENSMFAG00000001766	LARP4B	89	37.830	Macaca_fascicularis
ENSELUG00000001417	-	94	39.265	ENSMMUG00000005279	LARP4B	89	39.736	Macaca_mulatta
ENSELUG00000001417	-	94	39.412	ENSMNEG00000014019	LARP4B	89	38.123	Macaca_nemestrina
ENSELUG00000001417	-	94	39.376	ENSMLEG00000035198	LARP4B	89	39.852	Mandrillus_leucophaeus
ENSELUG00000001417	-	95	41.066	ENSMAMG00000013742	LARP4B	88	41.414	Mastacembelus_armatus
ENSELUG00000001417	-	77	48.425	ENSMZEG00005006498	-	84	48.323	Maylandia_zebra
ENSELUG00000001417	-	75	43.843	ENSMZEG00005014594	-	74	43.657	Maylandia_zebra
ENSELUG00000001417	-	94	40.030	ENSMGAG00000005472	LARP4B	89	40.327	Meleagris_gallopavo
ENSELUG00000001417	-	94	41.088	ENSMAUG00000021657	Larp4b	89	41.566	Mesocricetus_auratus
ENSELUG00000001417	-	94	40.816	ENSMICG00000001301	LARP4B	88	41.471	Microcebus_murinus
ENSELUG00000001417	-	77	43.542	ENSMOCG00000021452	Larp4b	81	44.118	Microtus_ochrogaster
ENSELUG00000001417	-	75	41.717	ENSMMOG00000011253	-	73	42.916	Mola_mola
ENSELUG00000001417	-	94	40.123	ENSMODG00000005957	LARP4B	87	40.979	Monodelphis_domestica
ENSELUG00000001417	-	98	38.957	ENSMALG00000012432	LARP4B	95	39.110	Monopterus_albus
ENSELUG00000001417	-	94	40.267	MGP_CAROLIEiJ_G0018216	Larp4b	86	49.250	Mus_caroli
ENSELUG00000001417	-	94	40.148	ENSMUSG00000033499	Larp4b	86	49.005	Mus_musculus
ENSELUG00000001417	-	94	41.604	MGP_PahariEiJ_G0019266	Larp4b	86	50.000	Mus_pahari
ENSELUG00000001417	-	94	40.148	MGP_SPRETEiJ_G0019074	Larp4b	86	49.005	Mus_spretus
ENSELUG00000001417	-	94	41.441	ENSMPUG00000016220	LARP4B	87	41.742	Mustela_putorius_furo
ENSELUG00000001417	-	87	42.479	ENSMLUG00000005880	LARP4B	88	42.479	Myotis_lucifugus
ENSELUG00000001417	-	94	39.367	ENSNGAG00000001750	Larp4b	89	39.850	Nannospalax_galili
ENSELUG00000001417	-	75	38.569	ENSNBRG00000020018	LARP4B	72	39.754	Neolamprologus_brichardi
ENSELUG00000001417	-	94	39.412	ENSNLEG00000013442	LARP4B	89	39.883	Nomascus_leucogenys
ENSELUG00000001417	-	94	37.936	ENSOPRG00000003300	LARP4B	89	37.464	Ochotona_princeps
ENSELUG00000001417	-	94	37.349	ENSODEG00000001109	LARP4B	86	43.317	Octodon_degus
ENSELUG00000001417	-	94	42.628	ENSONIG00000017705	LARP4B	88	43.045	Oreochromis_niloticus
ENSELUG00000001417	-	94	40.480	ENSOANG00000006100	LARP4B	89	40.462	Ornithorhynchus_anatinus
ENSELUG00000001417	-	94	38.737	ENSOCUG00000004950	LARP4B	87	39.199	Oryctolagus_cuniculus
ENSELUG00000001417	-	94	42.006	ENSORLG00000006080	LARP4B	88	42.044	Oryzias_latipes
ENSELUG00000001417	-	94	42.618	ENSORLG00020020940	LARP4B	88	41.898	Oryzias_latipes_hni
ENSELUG00000001417	-	94	42.618	ENSORLG00015020608	LARP4B	88	41.752	Oryzias_latipes_hsok
ENSELUG00000001417	-	94	41.053	ENSOMEG00000019619	LARP4B	88	41.399	Oryzias_melastigma
ENSELUG00000001417	-	88	40.000	ENSOGAG00000011540	LARP4B	88	40.510	Otolemur_garnettii
ENSELUG00000001417	-	94	41.452	ENSOARG00000015320	LARP4B	88	41.452	Ovis_aries
ENSELUG00000001417	-	94	39.673	ENSPPAG00000039232	LARP4B	89	40.148	Pan_paniscus
ENSELUG00000001417	-	94	40.606	ENSPPRG00000009489	LARP4B	90	40.758	Panthera_pardus
ENSELUG00000001417	-	94	40.455	ENSPTIG00000008543	LARP4B	90	40.606	Panthera_tigris_altaica
ENSELUG00000001417	-	94	39.673	ENSPTRG00000002235	LARP4B	89	40.148	Pan_troglodytes
ENSELUG00000001417	-	94	39.265	ENSPANG00000023546	LARP4B	89	37.977	Papio_anubis
ENSELUG00000001417	-	95	41.263	ENSPKIG00000012368	LARP4B	90	42.097	Paramormyrops_kingsleyae
ENSELUG00000001417	-	75	49.292	ENSPSIG00000005600	LARP4B	97	49.292	Pelodiscus_sinensis
ENSELUG00000001417	-	94	41.548	ENSPMGG00000008261	LARP4B	83	40.916	Periophthalmus_magnuspinnatus
ENSELUG00000001417	-	94	40.847	ENSPEMG00000014052	Larp4b	89	41.327	Peromyscus_maniculatus_bairdii
ENSELUG00000001417	-	77	46.140	ENSPFOG00000000029	LARP4B	88	41.449	Poecilia_formosa
ENSELUG00000001417	-	94	43.891	ENSPLAG00000002871	LARP4B	87	44.212	Poecilia_latipinna
ENSELUG00000001417	-	77	48.431	ENSPMEG00000016361	LARP4B	88	41.679	Poecilia_mexicana
ENSELUG00000001417	-	94	39.559	ENSPPYG00000002035	LARP4B	86	39.706	Pongo_abelii
ENSELUG00000001417	-	94	41.131	ENSPCOG00000014688	LARP4B	89	41.590	Propithecus_coquereli
ENSELUG00000001417	-	74	39.600	ENSPVAG00000009784	LARP4B	71	39.521	Pteropus_vampyrus
ENSELUG00000001417	-	95	42.424	ENSPNYG00000024252	LARP4B	88	41.618	Pundamilia_nyererei
ENSELUG00000001417	-	94	45.205	ENSPNAG00000028956	larp4b	91	45.205	Pygocentrus_nattereri
ENSELUG00000001417	-	94	41.061	ENSRNOG00000015888	Larp4b	89	41.541	Rattus_norvegicus
ENSELUG00000001417	-	94	39.265	ENSRBIG00000033294	LARP4B	89	39.736	Rhinopithecus_bieti
ENSELUG00000001417	-	94	39.556	ENSRROG00000033879	LARP4B	89	40.030	Rhinopithecus_roxellana
ENSELUG00000001417	-	94	35.294	ENSSBOG00000021109	LARP4B	88	35.630	Saimiri_boliviensis_boliviensis
ENSELUG00000001417	-	94	41.327	ENSSHAG00000013392	LARP4B	88	40.902	Sarcophilus_harrisii
ENSELUG00000001417	-	97	39.042	ENSSFOG00015003256	LARP4B	84	40.000	Scleropages_formosus
ENSELUG00000001417	-	94	41.975	ENSSMAG00000005982	-	75	61.635	Scophthalmus_maximus
ENSELUG00000001417	-	94	42.420	ENSSDUG00000006704	LARP4B	88	41.134	Seriola_dumerili
ENSELUG00000001417	-	75	44.618	ENSSLDG00000020660	LARP4B	75	44.618	Seriola_lalandi_dorsalis
ENSELUG00000001417	-	94	40.610	ENSSPUG00000013734	-	88	40.836	Sphenodon_punctatus
ENSELUG00000001417	-	94	42.308	ENSSPUG00000002102	-	88	42.492	Sphenodon_punctatus
ENSELUG00000001417	-	75	46.169	ENSSPAG00000014628	LARP4B	72	46.154	Stegastes_partitus
ENSELUG00000001417	-	94	40.545	ENSSSCG00000011162	LARP4B	89	44.507	Sus_scrofa
ENSELUG00000001417	-	94	41.679	ENSTGUG00000000811	-	89	41.832	Taeniopygia_guttata
ENSELUG00000001417	-	94	40.889	ENSTNIG00000007991	LARP4B	95	40.148	Tetraodon_nigroviridis
ENSELUG00000001417	-	94	41.133	ENSTNIG00000004571	-	86	41.133	Tetraodon_nigroviridis
ENSELUG00000001417	-	58	48.111	ENSTTRG00000011151	LARP4B	54	48.111	Tursiops_truncatus
ENSELUG00000001417	-	77	44.177	ENSUAMG00000016461	LARP4B	79	44.547	Ursus_americanus
ENSELUG00000001417	-	94	40.780	ENSUMAG00000016127	LARP4B	90	41.079	Ursus_maritimus
ENSELUG00000001417	-	94	40.483	ENSVVUG00000008641	LARP4B	87	48.628	Vulpes_vulpes
ENSELUG00000001417	-	94	40.944	ENSXETG00000016882	larp4b	89	41.248	Xenopus_tropicalis
ENSELUG00000001417	-	96	41.014	ENSXCOG00000019952	LARP4B	63	76.068	Xiphophorus_couchianus
ENSELUG00000001417	-	96	41.854	ENSXMAG00000021533	LARP4B	90	41.797	Xiphophorus_maculatus